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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073688 ID=TCONS_00073688|Name=TCONS_00073688|organism=Clytia hemisphaerica|type=transcript|length=1949bpRun BLAST on NCBI transcript from alignment at scaffold_97:1020246..1078069+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073688 ID=TCONS_00073688|Name=TCONS_00073688|organism=Clytia hemisphaerica|type=transcript|length=57824bp|location=Sequence derived from alignment at scaffold_97:1020246..1078069+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00073688 vs. Swiss-Prot (Human)
Match: S18B1 (MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.006e-46 Identity = 86/270 (31.85%), Postives = 135/270 (50.00%), Query Frame = 3
Query: 120 PQESVGQSAIQDETKPPKMFKSKREVVILIALSLMVFAATCCESILAPFFSPEAKSKXXXXXXXXXXFAIYPFSIFLLSPFVGKYLPIIGCRFCLLAGAFIMGGAQLLFGFVSTIESGSLFIVYCFAIRTVTAIGASMTSTAGLSILTISFKEHLAIIFSINELFIGVGYTSGPAIGGILYRVGGFHLPFTITGSILLAMIIPVFFLLPPEESFHNTSKNGNVRAKEDEEIGSLIQTLKVPGIFVISICIVSCGTILAFFDPTLTPYLLK 929
P+ G + P + S+ +V +LI+ + + + C SIL PFF EA+ KGA T IG IF + L S G YL IG +F +AG F+ GG +LFG + + G +FI CF +R + A+ + TA SIL +F ++A + E F G+G GP +GG LY+ G+ +PF + G ++L M+ ++LP ES D S + + +P + +I+ I S + F DPTL+ ++L+
Sbjct: 10 PRAPGGDDPAGSAGETPG-WLSREQVFVLISAASVNLGSMMCYSILGPFFPKEAEKKGASNTIIGMIFGCFALFELLASLVFGNYLVHIGAKFMFVAGMFVSGGVTILFGVLDRVPDGPVFIAMCFLVRVMDAVSFAAAMTASSSILAKAFPNNVATVLGSLETFSGLGLILGPPVGGFLYQSFGYEVPFIVLGCVVLLMVPLNMYILPNYES--------------DPGEHSFWKLIALPKVGLIAFVINSLSSCFGFLDPTLSLFVLE 264 HSP 2 Score: 84.3445 bits (207), Expect = 1.006e-46 Identity = 55/194 (28.35%), Postives = 96/194 (49.48%), Query Frame = 2
Query: 902 PNVDTILIKDRCITSEQIGLVFFMTSFLYVVGTPIVGAICDKKISGRH-LMIIGHFTTALSYFLLGPSPLFQNFLKGSVLLVEISMCFIGFCAAFFCVPLLSDMQKSGKKSGLPQTIATDTLISGIFNGCFGIGCSIGPLLGSTLVDLWGFEWTATIMALIITVEGLV--LFFFTIWEKKYYSKMQGYTKIAEE 1474
P + +++ + + +GLVF + Y + +P+ G + DK+ R L++ G+ TA Y LLGP P+ +K + L+ + + G A +P ++ ++G + ++T L+SG+F+ + IG +GP LG L + GFEW A I L + GL LF+ + ++ SK Q EE
Sbjct: 256 PTLSLFVLEKFNLPAGYVGLVFLGMALSYAISSPLFGLLSDKRPPLRKWLLVFGNLITAGCYMLLGPVPILH--IKSQLWLLVLILVVSGLSAGMSIIPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGLAMGLFYLLEYSRRKRSKSQNILSTEEE 447 The following BLAST results are available for this feature:
BLAST of TCONS_00073688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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