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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073778 ID=TCONS_00073778|Name=TCONS_00073778|organism=Clytia hemisphaerica|type=transcript|length=1173bp
CGTAGATGGTATCAAACAAGATCAATACCCAGGAATCTTCACATTCGAAA
GTGATGGTTCTATTCGACATGATTCAGATAAAATGCCGTTTTTCAGTCGA
AAGAAAAAGATTGCTGGAATATCTTTTCCGACAGCTGAATCAACTGAGAT
CTGTTGTCGATCTATTGACGATCTTCGACGTTTAAAAGAACGTCTTCTTA
ATAATCGATTCATGTTCAAAGGGAAAATGTACGTAGTTAATGGACAATTT
TCCGGCATCCAATGTCGAGTACATGAAAGTGGTGTGTTCTCCGTTGATCC
TCGACATCCAGATATTGCAGAACAGTTAATAAGTGCTTTTGACAAAGCCG
AAGAGTTTGCATTAAGTGGTTCAAAGTATGAAGTACAGATCAATTTTGAT
TTCTCAGTAGTGCAATGGTTTGAAAGATTCGCTTTGGAGAATTTAACAGA
CCAGATTATACAGCCTGGGAGCCGAGCATTTGCAACTTTTTCCATAACAA
ATGCGACGCATAAAGTTCAATGGTGTGGGGAATGTAGTCAGCCAAGAATC
TTAACAATGGGGTGTATATGCGTGCTACCATTTTGGGTACCATGTTGTTG
CGTTGAGAAAACGTACCGACAATGTGTTTATAAAAAACATATGCAGGTTA
TTGGCTGTACAGTTGCTACACTATAATCCATCGAATTTACAGCTCAACGA
GGGGAAAGGAAGACTCTATTCAATGAGAAATTAATTATTCACTATCCAAA
CCCAGCCAGCACAtaacgttattttaacgtttgtctaacgttcacaacgt
ccatataatgaATTGCAGAGAGGTTTAAACCTGAAGAAGGcacagaggga
tggacctcctcaacagggggtatatgtttttttttctggaaaacccCATC
GTGGCGcctataagaaactctttttgCTAGAGGTTGATCAGAAGcttatg
gcttcactttttctttacTTGAGATTAGAAAGTTTGAAGATTCTCCAGTC
ATTAATGTTGGCAattggaatttcttttttaaaaatatttcatatcataa
attatgatatttttataattttctgtgtttttatacaatatataaatata
ataatCGTAGTCATGTATCACGAAAAATGGTGAATTTATATAATCATAAC
CTATGATattttttgtgaattta Run BLAST on NCBI protein sequence of TCONS_00073778-protein >TCONS_00073778-protein ID=TCONS_00073778-protein|Name=TCONS_00073778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
VDGIKQDQYPGIFTFESDGSIRHDSDKMPFFSRKKKIAGISFPTAESTEI
CCRSIDDLRRLKERLLNNRFMFKGKMYVVNGQFSGIQCRVHESGVFSVDP
RHPDIAEQLISAFDKAEEFALSGSKYEVQINFDFSVVQWFERFALENLTD
QIIQPGSRAFATFSITNATHKVQWCGECSQPRILTMGCICVLPFWVPCCC
VEKTYRQCVYKKHMQVIGCTVATL Run BLAST on NCBI transcript from alignment at scaffold_97:951558..952730 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073778 ID=TCONS_00073778|Name=TCONS_00073778|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at scaffold_97:951558..952730 (Clytia hemisphaerica)
taaattcacaaaaaatATCATAGGTTATGATTATATAAATTCACCATTTT
TCGTGATACATGACTACGattattatatttatatattgtataaaaacaca
gaaaattataaaaatatcataatttatgatatgaaatatttttaaaaaag
aaattccaatTGCCAACATTAATGACTGGAGAATCTTCAAACTTTCTAAT
CTCAAgtaaagaaaaagtgaagccataagCTTCTGATCAACCTCTAGcaa
aaagagtttcttataggCGCCACGATGgggttttccagaaaaaaaaacat
ataccccctgttgaggaggtccatccctctgtgCCTTCTTCAGGTTTAAA
CCTCTCTGCAATtcattatatggacgttgtgaacgttagacaaacgttaa
aataacgttaTGTGCTGGCTGGGTTTGGATAGTGAATAATTAATTTCTCA
TTGAATAGAGTCTTCCTTTCCCCTCGTTGAGCTGTAAATTCGATGGATTA
TAGTGTAGCAACTGTACAGCCAATAACCTGCATATGTTTTTTATAAACAC
ATTGTCGGTACGTTTTCTCAACGCAACAACATGGTACCCAAAATGGTAGC
ACGCATATACACCCCATTGTTAAGATTCTTGGCTGACTACATTCCCCACA
CCATTGAACTTTATGCGTCGCATTTGTTATGGAAAAAGTTGCAAATGCTC
GGCTCCCAGGCTGTATAATCTGGTCTGTTAAATTCTCCAAAGCGAATCTT
TCAAACCATTGCACTACTGAGAAATCAAAATTGATCTGTACTTCATACTT
TGAACCACTTAATGCAAACTCTTCGGCTTTGTCAAAAGCACTTATTAACT
GTTCTGCAATATCTGGATGTCGAGGATCAACGGAGAACACACCACTTTCA
TGTACTCGACATTGGATGCCGGAAAATTGTCCATTAACTACGTACATTTT
CCCTTTGAACATGAATCGATTATTAAGAAGACGTTCTTTTAAACGTCGAA
GATCGTCAATAGATCGACAACAGATCTCAGTTGATTCAGCTGTCGGAAAA
GATATTCCAGCAATCTTTTTCTTTCGACTGAAAAACGGCATTTTATCTGA
ATCATGTCGAATAGAACCATCACTTTCGAATGTGAAGATTCCTGGGTATT
GATCTTGTTTGATACCATCTACG Coding sequence (CDS) from alignment at scaffold_97:951558..952730 >TCONS_00073778 ID=TCONS_00073778|Name=TCONS_00073778|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_97:951558..952730 (Clytia hemisphaerica)
TTATAGTGTAGCAACTGTACAGCCAATAACCTGCATATGTTTTTTATAAA
CACATTGTCGGTACGTTTTCTCAACGCAACAACATGGTACCCAAAATGGT
AGCACGCATATACACCCCATTGTTAAGATTCTTGGCTGACTACATTCCCC
ACACCATTGAACTTTATGCGTCGCATTTGTTATGGAAAAAGTTGCAAATG
CTCGGCTCCCAGGCTGTATAATCTGGTCTGTTAAATTCTCCAAAGCGAAT
CTTTCAAACCATTGCACTACTGAGAAATCAAAATTGATCTGTACTTCATA
CTTTGAACCACTTAATGCAAACTCTTCGGCTTTGTCAAAAGCACTTATTA
ACTGTTCTGCAATATCTGGATGTCGAGGATCAACGGAGAACACACCACTT
TCATGTACTCGACATTGGATGCCGGAAAATTGTCCATTAACTACGTACAT
TTTCCCTTTGAACATGAATCGATTATTAAGAAGACGTTCTTTTAAACGTC
GAAGATCGTCAATAGATCGACAACAGATCTCAGTTGATTCAGCTGTCGGA
AAAGATATTCCAGCAATCTTTTTCTTTCGACTGAAAAACGGCATTTTATC
TGAATCATGTCGAATAGAACCATCACTTTCGAATGTGAAGATTCCTGGGT
ATTGATCTTGTTTGATACCATCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073778-exon-scaffold_97-1491911889:951558..952730 | TCONS_00073778-exon-scaffold_97-1491911889:951558..952730 | Clytia hemisphaerica | exon |
| TCONS_00073778-exon-scaffold_97-1510915933:951558..952730 | TCONS_00073778-exon-scaffold_97-1510915933:951558..952730 | Clytia hemisphaerica | exon |
| TCONS_00073778-exon-scaffold_97-1575043694:951558..952730 | TCONS_00073778-exon-scaffold_97-1575043694:951558..952730 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:951558..952730 . |
Blast
The following BLAST results are available for this feature:
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