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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073539 ID=TCONS_00073539|Name=TCONS_00073539|organism=Clytia hemisphaerica|type=transcript|length=1307bp
ATTTATGTTTCATACTTTGTATCAAATCTGGTCATCTTACAGGTCAAGAA
ACTTGAAGATAAGAGGTTAAAATGGGTTGTTGCTGTTCAACAGTTTCAAG
TCTGGATAACCAGTTTGAATCAGTTGAAACTGTTGGTAACAGTCGTGCAC
GATGGATGACTAACCTAGATGCCAGCTTTACTACTAAACCAATAACTAAG
CTAGCAATACCTGGTAGTCATGATTGTGGTGCTTACTTTCTTGATGCAAG
TGGACCTGTCTGCCCTGATGAGACAGGGATTATTCAAGCCGCTGATTGCA
GTACATGTACCAAACAAATTATCGTAAGATGGTCACGAACACAAGGAGCT
ACCATCATCCAACAACTCAATGCAGGTGTTCGTTATCTGGACATGCGTAT
TGGATATCGAGCTGACgttgatgattttttctttgTACATGCTCTATACG
ggttcaaaataagcaaaatgtTTGAGGAGattcaaacatttttaaacGAT
AACCCAAAGGAAGTTATTATTCTTGATTTTCAGCAATTTCATACTTTCAC
AGCTGAAACTCATCAAAAGTTTATAGCAATGATTGAAACCTATTTCCCGA
ATATGTTATATCCATGCAACGGAGCAACTGAGGTGAATATGTCATTGAAT
GATTTCTGGCAAAATCAGAAACAGATATTCGCCAGATATGCTGCTGGTAG
TGTCACTGATCAGAATCCACAATTTTGGTCAAACAAGTTTATCAATACAC
CTTGGTATAATACAGCAGATATTGATGTGCTTTTAACTCGCCTGGATGAA
TTTTTTGATCTTTATGTGAGTGGATCTTTGAATATACATCAAGCTTTGTT
GTCACCTCAAACCTGCACCATTGTTTGCAAATCATGTTCGAGTTTGGAAA
AGGATTTAGCAATTCCCGGAAATTCACATATTAGACAAtggataaaatat
aaaaaacaggaaaacaaagaagtcaatgtttttatttgtgaCTTTATGGT
CCAATCAGCTATCATCCCTGAAGTATTGAAGTTCAACGAATGAATAAAGA
ACACTGGGTGcgttttttatcaataaaaaatcaaccaatgagaagccaTA
ATCAAAATTGACTGACATGTTACATAATAGATCACTTGAAACTGCAATAA
GAATTGTAGTAAACCTTCACCAtccatccatcataaatctctttgtttga
cTTTGATGGATTTGATTAAGGAAACCTTCCAGTGTAAACGCGCCCCAAAC
GCGTCCACTGCTTTGCATTTCCTTTTATACTGTTCCGATGTTTAATTGTG
AGTTtat Run BLAST on NCBI protein sequence of TCONS_00073539-protein >TCONS_00073539-protein ID=TCONS_00073539-protein|Name=TCONS_00073539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MGCCCSTVSSLDNQFESVETVGNSRARWMTNLDASFTTKPITKLAIPGSH
DCGAYFLDASGPVCPDETGIIQAADCSTCTKQIIVRWSRTQGATIIQQLN
AGVRYLDMRIGYRADVDDFFFVHALYGFKISKMFEEIQTFLNDNPKEVII
LDFQQFHTFTAETHQKFIAMIETYFPNMLYPCNGATEVNMSLNDFWQNQK
QIFARYAAGSVTDQNPQFWSNKFINTPWYNTADIDVLLTRLDEFFDLYVS
GSLNIHQALLSPQTCTIVCKSCSSLEKDLAIPGNSHIRQWIKYKKQENKE
VNVFICDFMVQSAIIPEVLKFNE Run BLAST on NCBI transcript from alignment at scaffold_94:153414..156082- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073539 ID=TCONS_00073539|Name=TCONS_00073539|organism=Clytia hemisphaerica|type=transcript|length=2669bp|location=Sequence derived from alignment at scaffold_94:153414..156082- (Clytia hemisphaerica)
ATTTATGTTTCATACTTTGTATCAAATCTGGTCATCTTACAGGTCAAGAA
ACTTGAAGATAAGAGGTTAAAATGGGTTGTTGCTGTTCAACAGTTTCAAG
TCTGGATAACCAGTTTGAATCAGTTGAAACTGTTGGTAACAGTCGTGCAC
GATGGATGACTAACCTAGATGCCAGCTTTACTACTAAACCAATAACTAAG
CTAGCAATACCTGGTAGTCATGATTGTGGTGCTTACTTTCTTGATGCAAG
TGGACCTGTCTGCCCTGGTAAGTAATGTCCTATTATAGACTGTGCCACAG
ACCCGCTGGGACCCCAGTTCACTAGAAAATTTGGCAAAAATTTCGTCCTT
GGTGGAAATATACCCCGGAATTTCAGCCCCATTGGGAAATTCACGTTCGA
AATTCAGTGTTCAAACACTGTGCAATCCCCCACTGGGAACGATAGAATTT
CTTTCCTCATTGAGATTTCAATAGGAATTTTTATCCCCACTGAGAAAAAA
AGTTCCACCGGGGCTGAGAGAAATGGGTGTATAGACAGACAGAAGAGCTC
TGTTTTATCAAAGGGATGTCTATTAATATACGATAACCGTAGTATAAATT
GTAGAACATTTGCAATCCCCGGCCAGGTCATACCAAAAACTTCATACTTA
GTACAAAATGGTACTTGAAGGCCCTTCTGTTTGACGACGCCCAGCAATTA
AGGGAATGATCAAGGATAACTCAAGTGAAGCAATACAGGGAAAAAGAGTA
GCCCCCCACCTGCTGGTTGATAGCTATCGAAAAAGAAGCCTTTGGCTTAC
TTAATTTTACTCACCCCTATGATGAAAGAATAATTCGTGCACAGTTTTTT
GACGGGTGTTTCTCATTGACTTTGGAGAAAATGGTCTCTATAGCAATAAG
TCATATACTAATACATCTGCCAATGCAGTATATTCTTGAAAGCGATATAG
GCCATTTCACAGGCGAAAAGAATATCATAAGTTATCAGACACATGGCTTT
GATAAAGATTTTGATAACGGTGTAAGAGTTTCGCTCTCTTACAAACGGGG
CACAATAAGTCCTGATAGCCCATGATTTATTCCGACAGAGAATGTTGGAT
CCGTGAAATTCATGACGTAATGATCTATACAGAAAATACCCGAAATAGAC
CGGTTGTTGTCACTAATTTTAAATTTAAACATACACATTTTTTTATAAGC
ACCCGAGTTGCTAATGGTCCAGTTCTGAGACAATTAAACAATAAGCCTTA
GCAACCTAGCCCTGAAACTGAGCATGCACCGGGAAAGCAATCAAAAGTAG
CTAAAAAGGAGGCATTTTCAGAATACCAAATTTGAGGTATTTTGGACCTA
AAATGAGATAAGAGGTCAAAGTTTTTGAAGTTGCCGGGTGTTTTTGGCGC
AGCACCCATAAGCAACCTGCTGACTGAATTTCAGAAATTCCTTAGCATCT
CCAGTCCTGAGACGAAAAGTCGGGGTTGCTTATGTATAGAAAATGCGTAA
AAATAGGGACGAATGCCTGGGCTATTTCATATGCTTTCGTATAAAACATT
ACGTCATGAAAACCATAACGTCGAAAAATTGCACGATGCTATGTACACTC
TGAATAATAATTTAATTTTCAATTTGCAGATGAGACAGGGATTATTCAAG
CCGCTGATTGCAGTACATGTACCAAACAAATTATCGTAAGATGGTCACGA
ACACAAGGAGCTACCATCATCCAACAACTCAATGCAGGTGTTCGTTATCT
GGACATGCGTATTGGATATCGAGCTGACGTTGATGATTTTTTCTTTGTAC
ATGCTCTATACGGGTTCAAAATAAGCAAAATGTTTGAGGAGATTCAAACA
TTTTTAAACGATAACCCAAAGGAAGTTATTATTCTTGATTTTCAGCAATT
TCATACTTTCACAGCTGAAACTCATCAAAAGTTTATAGCAATGATTGAAA
CCTATTTCCCGAATATGTTATATCCATGCAACGGAGCAACTGAGGTGAAT
ATGTCATTGAATGATTTCTGGCAAAATCAGAAACAGATATTCGCCAGATA
TGCTGCTGGTAGTGTCACTGATCAGAATCCACAATTTTGGTCAAACAAGT
TTATCAATACACCTTGGTATAATACAGCAGATATTGATGTGCTTTTAACT
CGCCTGGATGAATTTTTTGATCTTTATGTGAGTGGATCTTTGAATATACA
TCAAGCTTTGTTGTCACCTCAAACCTGCACCATTGTTTGCAAATCATGTT
CGAGTTTGGAAAAGGATTTAGCAATTCCCGGAAATTCACATATTAGACAA
TGGATAAAATATAAAAAACAGGAAAACAAAGAAGTCAATGTTTTTATTTG
TGACTTTATGGTCCAATCAGCTATCATCCCTGAAGTATTGAAGTTCAACG
AATGAATAAAGAACACTGGGTGCGTTTTTTATCAATAAAAAATCAACCAA
TGAGAAGCCATAATCAAAATTGACTGACATGTTACATAATAGATCACTTG
AAACTGCAATAAGAATTGTAGTAAACCTTCACCATCCATCCATCATAAAT
CTCTTTGTTTGACTTTGATGGATTTGATTAAGGAAACCTTCCAGTGTAAA
CGCGCCCCAAACGCGTCCACTGCTTTGCATTTCCTTTTATACTGTTCCGA
TGTTTAATTGTGAGTTTAT Coding sequence (CDS) from alignment at scaffold_94:153414..156082- >TCONS_00073539 ID=TCONS_00073539|Name=TCONS_00073539|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_94:153414..156082- (Clytia hemisphaerica)
ATGAGACAGGGATTATTCAAGCCGCTGATTGCAGTACATGTACCAAACAA
ATTATCGTAAGATGGTCACGAACACAAGGAGCTACCATCATCCAACAACT
CAATGCAGGTGTTCGTTATCTGGACATGCGTATTGGATATCGAGCTGACG
TTGATGATTTTTTCTTTGTACATGCTCTATACGGGTTCAAAATAAGCAAA
ATGTTTGAGGAGATTCAAACATTTTTAAACGATAACCCAAAGGAAGTTAT
TATTCTTGATTTTCAGCAATTTCATACTTTCACAGCTGAAACTCATCAAA
AGTTTATAGCAATGATTGAAACCTATTTCCCGAATATGTTATATCCATGC
AACGGAGCAACTGAGGTGAATATGTCATTGAATGATTTCTGGCAAAATCA
GAAACAGATATTCGCCAGATATGCTGCTGGTAGTGTCACTGATCAGAATC
CACAATTTTGGTCAAACAAGTTTATCAATACACCTTGGTATAATACAGCA
GATATTGATGTGCTTTTAACTCGCCTGGATGAATTTTTTGATCTTTATGT
GAGTGGATCTTTGAATATACATCAAGCTTTGTTGTCACCTCAAACCTGCA
CCATTGTTTGCAAATCATGTTCGAGTTTGGAAAAGGATTTAGCAATTCCC
GGAAATTCACATATTAGACAATGGATAAAATATAAAAAACAGGAAAACAA
AGAAGTCAATGTTTTTATTTGTGACTTTATGGTCCAATCAGCTATCATCC
CTGAAGTATTGAAGTTCAACGAATGAATGGGTTGTTGCTGTTCAACAGTT
TCAAGTCTGGATAACCAGTTTGAATCAGTTGAAACTGTTGGTAACAGTCG
TGCACGATGGATGACTAACCTAGATGCCAGCTTTACTACTAAACCAATAA
CTAAGCTAGCAATACCTGGTAGTCATGATTGTGGTGCTTACTTTCTTGAT
GCAAGTGGACCTGTCTGCCCTGATGAGACAGGGATTATTCAAGCCGCTGA
TTGCAGTACATGTACCAAACAAATTATCGTAAGATGGTCACGAACACAAG
GAGCTACCATCATCCAACAACTCAATGCAGGTGTTCGTTATCTGGACATG
CGTATTGGATATCGAGCTGACGTTGATGATTTTTTCTTTGTACATGCTCT
ATACGGGTTCAAAATAAGCAAAATGTTTGAGGAGATTCAAACATTTTTAA
ACGATAACCCAAAGGAAGTTATTATTCTTGATTTTCAGCAATTTCATACT
TTCACAGCTGAAACTCATCAAAAGTTTATAGCAATGATTGAAACCTATTT
CCCGAATATGTTATATCCATGCAACGGAGCAACTGAGGTGAATATGTCAT
TGAATGATTTCTGGCAAAATCAGAAACAGATATTCGCCAGATATGCTGCT
GGTAGTGTCACTGATCAGAATCCACAATTTTGGTCAAACAAGTTTATCAA
TACACCTTGGTATAATACAGCAGATATTGATGTGCTTTTAACTCGCCTGG
ATGAATTTTTTGATCTTTATGTGAGTGGATCTTTGAATATACATCAAGCT
TTGTTGTCACCTCAAACCTGCACCATTGTTTGCAAATCATGTTCGAGTTT
GGAAAAGGATTTAGCAATTCCCGGAAATTCACATATTAGACAATGGATAA
AATATAAAAAACAGGAAAACAAAGAAGTCAATGTTTTTATTTGTGACTTT
ATGGTCCAATCAGCTATCATCCCTGAAGTATTGAAGTTCAACGAATGAAT
GGGTTGTTGCTGTTCAACAGTTTCAAGTCTGGATAACCAGTTTGAATCAG
TTGAAACTGTTGGTAACAGTCGTGCACGATGGATGACTAACCTAGATGCC
AGCTTTACTACTAAACCAATAACTAAGCTAGCAATACCTGGTAGTCATGA
TTGTGGTGCTTACTTTCTTGATGCAAGTGGACCTGTCTGCCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073539-exon-scaffold_94-1575043694:155816..156082 | TCONS_00073539-exon-scaffold_94-1575043694:155816..156082 | Clytia hemisphaerica | exon |
| TCONS_00073539-exon-scaffold_94-1575043694:153414..154453 | TCONS_00073539-exon-scaffold_94-1575043694:153414..154453 | Clytia hemisphaerica | exon |
| TCONS_00073539-exon-scaffold_94-1510915933:155816..156082 | TCONS_00073539-exon-scaffold_94-1510915933:155816..156082 | Clytia hemisphaerica | exon |
| TCONS_00073539-exon-scaffold_94-1510915933:153414..154453 | TCONS_00073539-exon-scaffold_94-1510915933:153414..154453 | Clytia hemisphaerica | exon |
| TCONS_00073539-exon-scaffold_94-1491911889:155816..156082 | TCONS_00073539-exon-scaffold_94-1491911889:155816..156082 | Clytia hemisphaerica | exon |
| TCONS_00073539-exon-scaffold_94-1491911889:153414..154453 | TCONS_00073539-exon-scaffold_94-1491911889:153414..154453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:153414..156082 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017946 | PLC-like_Pdiesterase_TIM-brl |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008081 | phosphoric diester hydrolase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
| molecular_function |
GO:0008081 |
phosphoric diester hydrolase activity |
Blast
BLAST of TCONS_00073539 vs. Swiss-Prot (Human)
Match: PLCX3 (PI-PLC X domain-containing protein 3 OS=Homo sapiens GN=PLCXD3 PE=2 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 3.245e-48 Identity = 96/302 (31.79%), Postives = 152/302 (50.33%), Query Frame = 3
Query: 147 ARWMTNLDASFTTKPITKLAIPGSHDCGAYFLDASGPVCPDETGIIQ--AADCSTCTKQIIVRWSRTQGATIIQQLNAGVRYLDMRIGYRA-DVD-DFFFVHALYGFKISKMFEEIQTFLNDNPKEVIILDFQQFHTFTAETHQKFIAMIETYFPNMLYPCNGATEVNMSLNDFWQNQKQIFARYAAGSVTDQNPQFWSNKFINTPWYNTADIDVLLTRLD-EFFDLYVSGSLNIHQALLSPQTCTIVCKSCSSLEKDLAIPGNSHIRQWIKYKKQENKEVNVFICDFMVQSAIIPEVLKFN 1037
A WM L S + P+T LAIPGSHD ++++D + PV P++ +Q + T K+++ +W TQ QL AG+RY D+RI + D D + +F H L+ K+++ EEI FL D+ KEV+ LDF F+ H+K + M++ + N + P A EV SL W+ Q+ Y + V + P W + + PW NT D + L+ L + GS I Q +L+P+ T+V S L + + + QW++ +K +N+ DF+ I V+K N
Sbjct: 13 ADWMATLPESMHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMNFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEKLVQMLKDIYGNKMCPAIFAQEV--SLKYLWEKDYQVLVFYHS-PVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLN 311
The following BLAST results are available for this feature:
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