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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073421 ID=TCONS_00073421|Name=TCONS_00073421|organism=Clytia hemisphaerica|type=transcript|length=1560bp
cttatttgaaaAGAAAGGCTTGAATGTGTCCCAGAAGCCTTTAGGAGATT
GTTTTGGATCACTTTTACTGAAGAGAGATTTCTTGGCTTTCCTATTCATA
TTGACGACAAAATTTCTCTGACGCTTATAACGAGCAACATCTTCAGGATT
TTTGGTATCATTTGCTatgttttttagttttgatcGGAGCATAATGGCTT
TCCTGAGTTCTTTGGTTACATGCTGCTTATTATTAGCGCGGATTAACCTT
GTCTTTTTGATGGTGCATGCTCNGATTTTTGGTATTATTTGCTatgtttt
ttagttttgatcGGAGCATAATGGCTTTCCTGAGTTCTTTGGTTACATGC
TGCTTATTATTAGCGCGGATTAACCTTGTCTTTTTGATGGTGCATGctca
tttacaaaaattttctcaaataagcTATAATCTACAATATTTCTATCTTT
AAGTTGACAATTTAGTTCGTTTAAAAATATAAcagaattgaaatttttat
aatCCCTAAACTTCCTTCGTACAGGGGGTAATTTTACATAAAGTAGATTT
CATCATAGTATGGATAAGAAGGTGATAGTCACTTGAGCCCGTTTCTAAGG
CACCTGTAAATCAAAAGGAATGCTTCCTGTTTGTTAAAATTAAGTCAATG
CAGGTGCCATTATCTgacttaaaacaggttttttgttTGATCAGATTGTA
GACATCATTAGCattcatgaaattttttagTAATTCGTTATCAGGTTCCA
AGTTAAAATCACCTACCACCATAAAATTATTATAAGATCTACTATAAAAA
TCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTT
TGTAACCTGGAAGAATAAGACGGCTGGTTGTAAAAGCGTCATCAAGCTTA
GTTTCAGAGATAGCTAAAACATCtatattattttccaaaaaagtatcAAG
GCCTTTCAACTTATGGCGTACtgaatttatatttatatatccTATTGTGA
GATTTAAAgggtatttcaatttttgatttcggAGATTTGTAATGGGCGAA
CAATCAGTATCTTTGAGAATGACAAATTCATTTGGTGTACTATCCAATCA
CATCTTTCCAAGAAaagatttaagatttaaaatttaatgCCAATCTTTTC
AATCCCTTTGGATTCATGTGAAGTTTTCTTTTTGCTAAACATGAGTTATC
TACATTACCATGCTCAACCAATCCAATGTTTCTATCACTACAAAACTTCC
GCagctcttcatttttcaactttactttactAAAACTTCCTTGAAAGTCA
TTTCGCAAACACAGctcagaaaaataaatttgggtTTCAGNCAATCCAAT
GTTTCTATCACTGCAAAACTTCCGCagctcttcatttttcaactttactt
tactAAAACTTCCTTGAAAGTCATTTCGCAAACACAGctcagaaaaataa
atttgggtTTCAGGACTTATTTCTTTAACAGTTTTGAAGAGAAGATCGAG
ATTTTCGGTTGAATTAGCGATTGATTTAGTAAGGTCGTTTGTCCCCACGT
GAATGATCAA Run BLAST on NCBI protein sequence of TCONS_00073421-protein >TCONS_00073421-protein ID=TCONS_00073421-protein|Name=TCONS_00073421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
LIIHVGTNDLTKSIANSTENLDLLFKTVKEISPETQIYFSELCLRNDFQG
SFSKVKLKNEELRKFCSDRNIGLXETQIYFSELCLRNDFQGSFSKVKLKN
EELRKFCSDRNIGLVEHGNVDNSCLAKRKLHMNPKGLKRLALNFKS Run BLAST on NCBI transcript from alignment at scaffold_91:73626..75185 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073421 ID=TCONS_00073421|Name=TCONS_00073421|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at scaffold_91:73626..75185 (Clytia hemisphaerica)
TTGATCATTCACGTGGGGACAAACGACCTTACTAAATCAATCGCTAATTC
AACCGAAAATCTCGATCTTCTCTTCAAAACTGTTAAAGAAATAAGTCCTG
AAacccaaatttatttttctgagCTGTGTTTGCGAAATGACTTTCAAGGA
AGTTTTagtaaagtaaagttgaaaaatgaagagctGCGGAAGTTTTGCAG
TGATAGAAACATTGGATTGNCTGAAacccaaatttatttttctgagCTGT
GTTTGCGAAATGACTTTCAAGGAAGTTTTagtaaagtaaagttgaaaaat
gaagagctGCGGAAGTTTTGTAGTGATAGAAACATTGGATTGGTTGAGCA
TGGTAATGTAGATAACTCATGTTTAGCAAAAAGAAAACTTCACATGAATC
CAAAGGGATTGAAAAGATTGGcattaaattttaaatcttaaatcttTTCT
TGGAAAGATGTGATTGGATAGTACACCAAATGAATTTGTCATTCTCAAAG
ATACTGATTGTTCGCCCATTACAAATCTccgaaatcaaaaattgaaatac
ccTTTAAATCTCACAATAggatatataaatataaattcaGTACGCCATAA
GTTGAAAGGCCTTgatacttttttggaaaataatataGATGTTTTAGCTA
TCTCTGAAACTAAGCTTGATGACGCTTTTACAACCAGCCGTCTTATTCTT
CCAGGTTACAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTAGATTTTTATAGTAGATCTTATAATAATTTTATGGTGGTAGGT
GATTTTAACTTGGAACCTGATAACGAATTActaaaaaatttcatgaatGC
TAATGATGTCTACAATCTGATCAaacaaaaaacctgttttaagtcAGATA
ATGGCACCTGCATTGACTTAATTTTAACAAACAGGAAGCATTCCTTTTGA
TTTACAGGTGCCTTAGAAACGGGCTCAAGTGACTATCACCTTCTTATCCA
TACTATGATGAAATCTACTTTATGTAAAATTACCCCCTGTACGAAGGAAG
TTTAGGGattataaaaatttcaattctgTTATATTTTTAAACGAACTAAA
TTGTCAACTTAAAGATAGAAATATTGTAGATTATAgcttatttgagaaaa
tttttgtaaatgagCATGCACCATCAAAAAGACAAGGTTAATCCGCGCTA
ATAATAAGCAGCATGTAACCAAAGAACTCAGGAAAGCCATTATGCTCCga
tcaaaactaaaaaacatAGCAAATAATACCAAAAATCNGAGCATGCACCA
TCAAAAAGACAAGGTTAATCCGCGCTAATAATAAGCAGCATGTAACCAAA
GAACTCAGGAAAGCCATTATGCTCCgatcaaaactaaaaaacatAGCAAA
TGATACCAAAAATCCTGAAGATGTTGCTCGTTATAAGCGTCAGAGAAATT
TTGTCGTCAATATGAATAGGAAAGCCAAGAAATCTCTCTTCAGTAAAAGT
GATCCAAAACAATCTCCTAAAGGCTTCTGGGACACATTCAAGCCTTTCTt
ttcaaataag Coding sequence (CDS) from alignment at scaffold_91:73626..75185 >TCONS_00073421 ID=TCONS_00073421|Name=TCONS_00073421|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_91:73626..75185 (Clytia hemisphaerica)
TTGATCATTCACGTGGGGACAAACGACCTTACTAAATCAATCGCTAATTC
AACCGAAAATCTCGATCTTCTCTTCAAAACTGTTAAAGAAATAAGTCCTG
AAacccaaatttatttttctgagCTGTGTTTGCGAAATGACTTTCAAGGA
AGTTTTagtaaagtaaagttgaaaaatgaagagctGCGGAAGTTTTGCAG
TGATAGAAACATTGGATTGNCTGAAacccaaatttatttttctgagCTGT
GTTTGCGAAATGACTTTCAAGGAAGTTTTagtaaagtaaagttgaaaaat
gaagagctGCGGAAGTTTTGTAGTGATAGAAACATTGGATTGGTTGAGCA
TGGTAATGTAGATAACTCATGTTTAGCAAAAAGAAAACTTCACATGAATC
CAAAGGGATTGAAAAGATTGGcattaaattttaaatcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073421-exon-scaffold_91-1491911889:73626..75185 | TCONS_00073421-exon-scaffold_91-1491911889:73626..75185 | Clytia hemisphaerica | exon |
| TCONS_00073421-exon-scaffold_91-1510915933:73626..75185 | TCONS_00073421-exon-scaffold_91-1510915933:73626..75185 | Clytia hemisphaerica | exon |
| TCONS_00073421-exon-scaffold_91-1575043694:73626..75185 | TCONS_00073421-exon-scaffold_91-1575043694:73626..75185 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_91 | supercontig | scaffold_91:73626..75185 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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