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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073232 ID=TCONS_00073232|Name=TCONS_00073232|organism=Clytia hemisphaerica|type=transcript|length=1834bp
attatttctatctttaaaaaagggtgtcagaattagatgagggatgtcga
tattagaccaacttacggtattttTCAACGACATTAACCGTATTTTTTCC
AGCtattatttagaaattttcctgataaactgctacttttaactttcgaa
agctcactttgataaaaaaaatacaGACAGTGCCAAATTTATGGTCCAAA
ATTctttatcaaaatataaaaaatgggTGTTAACCatctattcaaaattt
tattgttttcagaTAGATATAAAAACTCATGTAGACAAACTTGTGACGGT
GGGTTGGCATTCTGGAATCGTAATCAATCCATTTCTAGTCGTGGAATTTG
TTTTTAGTGTCGAGCTGGTAGTCGCTTCAGTCGTTGAAGACCCAGGACCG
ACGCGTCTAGTCCTTCGAGGTCCACCTTGAAGTACTCGATCTCCACGTCG
GCGATTTCGAAAATTAAGTATAATCTTAATTGAggtgttaaagtttttca
atcGTACCATGTAGATGAATGGATTGACACATGAATTGAACGAAATGAGT
ATGGATTGGAGATCCCGTAAAACGTGTCTAGAGACGCAAtccaatatttt
ccaaaaatataacaTAAAAGTCATCGCAACACCAGGGAGATATAACAATA
TGAAAAAGACAATCACTAGAAGATACGTACGTGTTAATCGTTTCTCTTGC
ACTAAACGACGGCGTTGAAAATCCGATGATGCGGATGACGGTAATTGTGC
CGTCATCACTCTCGACTGCCGTCGAAAAAGTTTGTTCATTTGTATAATGA
TAATCACCAAGACAACAAAGCTGGTCAAAATGGCGACACATGCAAATACG
AAATAATACTCGACTGCGCCAACTTTGAAATAGATAAACGGAAACGCGAT
AGAGATAGTCCAAATAATAGCAGTAATGAAAATACATCTTTTCCAGCTAA
AATATAATCGGTATTTGATCGCCCTGGATATAGCAATATATCTATCAATA
GTCAATGTTATTAAACTGATCAAACTGGCCATTCCAGATATAAAATAAGA
CATTCGTAAAATATTATTGACAATCGGTTCCAACATGACTTTATATTCCA
AGTAATGTGTATATACACATAAAGGCATGCTGATACTTCCCATAATAAAA
TCAGCAACAGCAAgattgattaaaaaataattgaacgGATTCCGAAGTTT
TTTCAACGGATCTGCGATAACGGCGACGATAATAAGGCCGTTTCCGATAG
TTGCCACAACCGCGATGACGAAACAACAAATTCCGGTTGTAATCGAAAGT
ACCGGTGGGGCCCATGAGTCGGCACCGCAAGTTGGGTTTCCGACATTTCT
CGACATTTTATCCAAACTTGTtctttttttgtatgaaaatatCTGGTTGG
AATTTTCTGTATTGAACCTCAAGTGGTATGGTTTATTCAGTCATTCCCAA
GTTTTGGTATTGGTTTAGCTTAATGTTTTTTATAGCAATGATTCCAATGA
TTTAATCGATGTCTTCTTTTTCTGGGTGAATAAGGAAAGAAAAGAATTGT
GATTACATTTACGTGTAGACTAGTGCAAAGATCACGCCCACTCGATGACA
AGACGTCAAAATAACTTTCAGAAATAACGTCcatataaaattaaatttga
taaacaattttcaggatgtgtatctgacagggtcgacttttggttatttt
gaacaatttttagggtggaaattagaaaatctttgaatttttcgtctact
tttagcCACTTTTCAgtgtgaaaattggaaaattgaaaaatcgtcAAAAC
AATGTACTGATGTTGAGTTTGATGCAAATAACTG Run BLAST on NCBI protein sequence of TCONS_00073232-protein >TCONS_00073232-protein ID=TCONS_00073232-protein|Name=TCONS_00073232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MSRNVGNPTCGADSWAPPVLSITTGICCFVIAVVATIGNGLIIVAVIADP
LKKLRNPFNYFLINLAVADFIMGSISMPLCVYTHYLEYKVMLEPIVNNIL
RMSYFISGMASLISLITLTIDRYIAISRAIKYRLYFSWKRCIFITAIIWT
ISIAFPFIYFKVGAVEYYFVFACVAILTSFVVLVIIIIQMNKLFRRQSRV
MTAQLPSSASSDFQRRRLVQEKRLTRTYLLVIVFFILLYLPGVAMTFMLY
FWKILDCVSRHVLRDLQSILISFNSCVNPFIYMVRLKNFNTSIKIILNFR
NRRRGDRVLQGGPRRTRRVGPGSSTTEATTSSTLKTNSTTRNGLITIPEC
QPTVTSLST Run BLAST on NCBI transcript from alignment at scaffold_88:11389..13222 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073232 ID=TCONS_00073232|Name=TCONS_00073232|organism=Clytia hemisphaerica|type=transcript|length=1834bp|location=Sequence derived from alignment at scaffold_88:11389..13222 (Clytia hemisphaerica)
CAGTTATTTGCATCAAACTCAACATCAGTACATTGTTTTgacgatttttc
aattttccaattttcacacTGAAAAGTGgctaaaagtagacgaaaaattc
aaagattttctaatttccaccctaaaaattgttcaaaataaccaaaagtc
gaccctgtcagatacacatcctgaaaattgtttatcaaatttaattttat
atgGACGTTATTTCTGAAAGTTATTTTGACGTCTTGTCATCGAGTGGGCG
TGATCTTTGCACTAGTCTACACGTAAATGTAATCACAATTCTTTTCTTTC
CTTATTCACCCAGAAAAAGAAGACATCGATTAAATCATTGGAATCATTGC
TATAAAAAACATTAAGCTAAACCAATACCAAAACTTGGGAATGACTGAAT
AAACCATACCACTTGAGGTTCAATACAGAAAATTCCAACCAGatattttc
atacaaaaaaagaACAAGTTTGGATAAAATGTCGAGAAATGTCGGAAACC
CAACTTGCGGTGCCGACTCATGGGCCCCACCGGTACTTTCGATTACAACC
GGAATTTGTTGTTTCGTCATCGCGGTTGTGGCAACTATCGGAAACGGCCT
TATTATCGTCGCCGTTATCGCAGATCCGTTGAAAAAACTTCGGAATCcgt
tcaattattttttaatcaatcTTGCTGTTGCTGATTTTATTATGGGAAGT
ATCAGCATGCCTTTATGTGTATATACACATTACTTGGAATATAAAGTCAT
GTTGGAACCGATTGTCAATAATATTTTACGAATGTCTTATTTTATATCTG
GAATGGCCAGTTTGATCAGTTTAATAACATTGACTATTGATAGATATATT
GCTATATCCAGGGCGATCAAATACCGATTATATTTTAGCTGGAAAAGATG
TATTTTCATTACTGCTATTATTTGGACTATCTCTATCGCGTTTCCGTTTA
TCTATTTCAAAGTTGGCGCAGTCGAGTATTATTTCGTATTTGCATGTGTC
GCCATTTTGACCAGCTTTGTTGTCTTGGTGATTATCATTATACAAATGAA
CAAACTTTTTCGACGGCAGTCGAGAGTGATGACGGCACAATTACCGTCAT
CCGCATCATCGGATTTTCAACGCCGTCGTTTAGTGCAAGAGAAACGATTA
ACACGTACGTATCTTCTAGTGATTGTCTTTTTCATATTGTTATATCTCCC
TGGTGTTGCGATGACTTTTAtgttatatttttggaaaatattggaTTGCG
TCTCTAGACACGTTTTACGGGATCTCCAATCCATACTCATTTCGTTCAAT
TCATGTGTCAATCCATTCATCTACATGGTACgattgaaaaactttaacac
cTCAATTAAGATTATACTTAATTTTCGAAATCGCCGACGTGGAGATCGAG
TACTTCAAGGTGGACCTCGAAGGACTAGACGCGTCGGTCCTGGGTCTTCA
ACGACTGAAGCGACTACCAGCTCGACACTAAAAACAAATTCCACGACTAG
AAATGGATTGATTACGATTCCAGAATGCCAACCCACCGTCACAAGTTTGT
CTACATGAGTTTTTATATCTAtctgaaaacaataaaattttgaatagatG
GTTAACAcccattttttatattttgataaagAATTTTGGACCATAAATTT
GGCACTGTCtgtattttttttatcaaagtgagctttcgaaagttaaaagt
agcagtttatcaggaaaatttctaaataataGCTGGAAAAAATACGGTTA
ATGTCGTTGAaaaataccgtaagttggtctaatatcgacatccctcatct
aattctgacacccttttttaaagatagaaataat Coding sequence (CDS) from alignment at scaffold_88:11389..13222 >TCONS_00073232 ID=TCONS_00073232|Name=TCONS_00073232|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_88:11389..13222 (Clytia hemisphaerica)
ATGTCGAGAAATGTCGGAAACCCAACTTGCGGTGCCGACTCATGGGCCCC
ACCGGTACTTTCGATTACAACCGGAATTTGTTGTTTCGTCATCGCGGTTG
TGGCAACTATCGGAAACGGCCTTATTATCGTCGCCGTTATCGCAGATCCG
TTGAAAAAACTTCGGAATCcgttcaattattttttaatcaatcTTGCTGT
TGCTGATTTTATTATGGGAAGTATCAGCATGCCTTTATGTGTATATACAC
ATTACTTGGAATATAAAGTCATGTTGGAACCGATTGTCAATAATATTTTA
CGAATGTCTTATTTTATATCTGGAATGGCCAGTTTGATCAGTTTAATAAC
ATTGACTATTGATAGATATATTGCTATATCCAGGGCGATCAAATACCGAT
TATATTTTAGCTGGAAAAGATGTATTTTCATTACTGCTATTATTTGGACT
ATCTCTATCGCGTTTCCGTTTATCTATTTCAAAGTTGGCGCAGTCGAGTA
TTATTTCGTATTTGCATGTGTCGCCATTTTGACCAGCTTTGTTGTCTTGG
TGATTATCATTATACAAATGAACAAACTTTTTCGACGGCAGTCGAGAGTG
ATGACGGCACAATTACCGTCATCCGCATCATCGGATTTTCAACGCCGTCG
TTTAGTGCAAGAGAAACGATTAACACGTACGTATCTTCTAGTGATTGTCT
TTTTCATATTGTTATATCTCCCTGGTGTTGCGATGACTTTTAtgttatat
ttttggaaaatattggaTTGCGTCTCTAGACACGTTTTACGGGATCTCCA
ATCCATACTCATTTCGTTCAATTCATGTGTCAATCCATTCATCTACATGG
TACgattgaaaaactttaacaccTCAATTAAGATTATACTTAATTTTCGA
AATCGCCGACGTGGAGATCGAGTACTTCAAGGTGGACCTCGAAGGACTAG
ACGCGTCGGTCCTGGGTCTTCAACGACTGAAGCGACTACCAGCTCGACAC
TAAAAACAAATTCCACGACTAGAAATGGATTGATTACGATTCCAGAATGC
CAACCCACCGTCACAAGTTTGTCTACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073232-exon-scaffold_88-1491911889:11389..13222 | TCONS_00073232-exon-scaffold_88-1491911889:11389..13222 | Clytia hemisphaerica | exon |
| TCONS_00073232-exon-scaffold_88-1510915933:11389..13222 | TCONS_00073232-exon-scaffold_88-1510915933:11389..13222 | Clytia hemisphaerica | exon |
| TCONS_00073232-exon-scaffold_88-1575043694:11389..13222 | TCONS_00073232-exon-scaffold_88-1575043694:11389..13222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:11389..13222 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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