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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072954 ID=TCONS_00072954|Name=TCONS_00072954|organism=Clytia hemisphaerica|type=transcript|length=780bp
Aaataattaccatggtgattatgtcccttgagacattaaatgattttttt
atggatacgaagtagttttaataaaatccgctggaagTTAATCATcatga
caataatttcaaaacgaggcaagtgatgttcgtgacgtaatttatgaaaa
ggtctattacctCTTTTGGTGACAGTTGTTGTGCCCACACCTCCACCCGA
GGATATGCTCAAATTAGAATGTCACTCCAATGGTTTCGAAGCTGGATTCA
GTTTAAAACAATTATCAGTAAAGACGGTACCCTACTCTATCAGGTTTTCT
GGTAACAATAACTGCAGCTCAGTTAATAAGACTTCGGTAGGTCGGATCAG
AAACGGAAGACTTTGGATTGGTTCAAATTATACCGAATGTGTAATCAAAT
CGTCTGAAGAAAATGATAACATTGTATTTGTACAAAAACTTATTTTGGAA
TACAAGGCCAAACGACCAGTGCATAGTTCACCGATCAGTTTCGGGTATAA
AGTCAAATGCTATTTGAAGCGCAAGGTCAAAGAGAAAATGAATCTTGAAG
TCGAAGATGAGATCCAGAACTATCCGTCAATCAATGGTACATCAAATTTC
CAACTGGAATTGAAAATGACTCGACCAGACAGCGACAAAGAACAACAAAT
GGTCACTATTGGAGATCGTTTGCGATTCACTTTAAACCTCCCAAACGCTC
CGAAAGATGTGAAAACTTCACCTCAAAATTGTTACGCAACTAGAATAGAT
GGAAGCGGAAGATACGATTTGATTTCAAAC Run BLAST on NCBI protein sequence of TCONS_00072954-protein >TCONS_00072954-protein ID=TCONS_00072954-protein|Name=TCONS_00072954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MLKLECHSNGFEAGFSLKQLSVKTVPYSIRFSGNNNCSSVNKTSVGRIRN
GRLWIGSNYTECVIKSSEENDNIVFVQKLILEYKAKRPVHSSPISFGYKV
KCYLKRKVKEKMNLEVEDEIQNYPSINGTSNFQLELKMTRPDSDKEQQMV
TIGDRLRFTLNLPNAPKDVKTSPQNCYATRIDGSGRYDLISN Run BLAST on NCBI transcript from alignment at scaffold_86:1251840..1253349+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072954 ID=TCONS_00072954|Name=TCONS_00072954|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at scaffold_86:1251840..1253349+ (Clytia hemisphaerica)
Aaataattaccatggtgattatgtcccttgagacattaaatgattttttt
atggatacgaagtagttttaataaaatccgctggaagTTAATCATcatga
caataatttcaaaacgaggcaagtgatgttcgtgacgtaatttatgaaaa
ggtctattacctCTTTTGGTGACAGTTGTTGTGCCCACACCTCCACCCGA
GGATATGCTCAAATTAGAATGTCACTCCAATGGTTTCGAAGCTGGATTCA
GTTTAAAACAATTATCAGTAAAGACGGTACCCTACTCTATCAGGTTTTCT
GGTAACAATAACTGCAGCTCAGTTAATAAGACTTCGGTAGGTCGGATCAG
AAACGGAAGACTTTGGATTGGTTCAAATTATACCGAATGTGTAATCAAAT
CGTCTGAAGAAAATGATAACATTGTATTTGTACAAAAACTTATTTTGGAA
TACAAGGCCAAACGACCAGTGCATAGTTCACCGATCAGTTTCGGGTATAA
AGTCAAATGCTATTTGAAGCGCAAGGTCAAAGAGAAAATGAATCTTGAAG
TCGAAGATGAGATCCAGAACTATCCGTCAATCAGTGAGtatttaaaggaa
aaaatattgttgaattttttttttaggtgaatgaacgaaaaagttttttt
cgaggGAATACAAATAAGCGGATGGCTGGAAAATATTAATTTTGCGGTAA
TTTAATTTTGCGTTTGAAGGATATCTTCAGTGTTTTAAAATAAGCAATAA
ACCTGTTTTAAGCTcaagatagaaaaaaatttgggaaacaaaaaaaatta
atcaaatttgGTGTGAATTTAAATTGAATGATGGTGTATTTTCGAGTAAA
TGCACCTAATCAACTTTCTTTCCCCTAAAATTTCTCCTTTTAAAAGGtat
tgtttcttataaaaatactttctttaaatatctttctaaatctgaaaaaa
attaattatttgctaaaaatatttattgagcTTCATGTTtcaacagaaaa
aaattaaagcattTTGTTCGaatattggccaaaatttcataaaattgtct
tgattgacattttgacgttattttttggaaaaaaaaatggTTCTACAAGT
AACCATGTTAAAAAGGAGGCTCAAAGCTAACGAGTTTCTAATTCTTTCTG
GATCCAGAGATTGTGTAAAGATTGAACTAGTTGATGTtggaaatagcttt
aaaagaaCTTGCCCGATGCTTAAAAGGGTAATTGAGGATCTTgaatttct
cagaaaaattcttttaaaaagggAATGTTTGAAGAGGATTTTATTAGGAT
CCTTTTATTTTAGATGGTACATCAAATTTCCAACTGGAATTGAAAATGAC
TCGACCAGACAGCGACAAAGAACAACAAATGGTCACTATTGGAGATCGTT
TGCGATTCACTTTAAACCTCCCAAACGCTCCGAAAGATGTGAAAACTTCA
CCTCAAAATTGTTACGCAACTAGAATAGATGGAAGCGGAAGATACGATTT
GATTTCAAAC Coding sequence (CDS) from alignment at scaffold_86:1251840..1253349+ >TCONS_00072954 ID=TCONS_00072954|Name=TCONS_00072954|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_86:1251840..1253349+ (Clytia hemisphaerica)
ATGCTCAAATTAGAATGTCACTCCAATGGTTTCGAAGCTGGATTCAGTTT
AAAACAATTATCAGTAAAGACGGTACCCTACTCTATCAGGTTTTCTGGTA
ACAATAACTGCAGCTCAGTTAATAAGACTTCGGTAGGTCGGATCAGAAAC
GGAAGACTTTGGATTGGTTCAAATTATACCGAATGTGTAATCAAATCGTC
TGAAGAAAATGATAACATTGTATTTGTACAAAAACTTATTTTGGAATACA
AGGCCAAACGACCAGTGCATAGTTCACCGATCAGTTTCGGGTATAAAGTC
AAATGCTATTTGAAGCGCAAGGTCAAAGAGAAAATGAATCTTGAAGTCGA
AGATGAGATCCAGAACTATCCGTCAATCAATGGTACATCAAATTTCCAAC
TGGAATTGAAAATGACTCGACCAGACAGCGACAAAGAACAACAAATGGTC
ACTATTGGAGATCGTTTGCGATTCACTTTAAACCTCCCAAACGCTCCGAA
AGATGTGAAAACTTCACCTCAAAATTGTTACGCAACTAGAATAGATGGAA
GCGGAAGATACGATTTGATTTCAAACATGCTCAAATTAGAATGTCACTCC
AATGGTTTCGAAGCTGGATTCAGTTTAAAACAATTATCAGTAAAGACGGT
ACCCTACTCTATCAGGTTTTCTGGTAACAATAACTGCAGCTCAGTTAATA
AGACTTCGGTAGGTCGGATCAGAAACGGAAGACTTTGGATTGGTTCAAAT
TATACCGAATGTGTAATCAAATCGTCTGAAGAAAATGATAACATTGTATT
TGTACAAAAACTTATTTTGGAATACAAGGCCAAACGACCAGTGCATAGTT
CACCGATCAGTTTCGGGTATAAAGTCAAATGCTATTTGAAGCGCAAGGTC
AAAGAGAAAATGAATCTTGAAGTCGAAGATGAGATCCAGAACTATCCGTC
AATCAATGGTACATCAAATTTCCAACTGGAATTGAAAATGACTCGACCAG
ACAGCGACAAAGAACAACAAATGGTCACTATTGGAGATCGTTTGCGATTC
ACTTTAAACCTCCCAAACGCTCCGAAAGATGTGAAAACTTCACCTCAAAA
TTGTTACGCAACTAGAATAGATGGAAGCGGAAGATACGATTTGATTTCAA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072954-exon-scaffold_86-1491911889:1251840..1252422 | TCONS_00072954-exon-scaffold_86-1491911889:1251840..1252422 | Clytia hemisphaerica | exon |
| TCONS_00072954-exon-scaffold_86-1510915933:1251840..1252422 | TCONS_00072954-exon-scaffold_86-1510915933:1251840..1252422 | Clytia hemisphaerica | exon |
| TCONS_00072954-exon-scaffold_86-1575043694:1251840..1252422 | TCONS_00072954-exon-scaffold_86-1575043694:1251840..1252422 | Clytia hemisphaerica | exon |
| TCONS_00072954-exon-scaffold_86-1491911889:1253153..1253349 | TCONS_00072954-exon-scaffold_86-1491911889:1253153..1253349 | Clytia hemisphaerica | exon |
| TCONS_00072954-exon-scaffold_86-1510915933:1253153..1253349 | TCONS_00072954-exon-scaffold_86-1510915933:1253153..1253349 | Clytia hemisphaerica | exon |
| TCONS_00072954-exon-scaffold_86-1575043694:1253153..1253349 | TCONS_00072954-exon-scaffold_86-1575043694:1253153..1253349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1251840..1253349 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR001507 | ZP_dom |
Blast
The following BLAST results are available for this feature:
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