TCONS_00073093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073093
Unique NameTCONS_00073093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073093 ID=TCONS_00073093|Name=TCONS_00073093|organism=Clytia hemisphaerica|type=transcript|length=679bp
NNTATCGGTTCCGGACGAATGTTCCGGCATGCGAATTATTGAGCATGCGC
ATAAAAGGGGAGAAGTTATCACTCGTGTCATCTCGCATCAAACGTAAGGT
CGCGTTCCAAAATGGCAGAATCTGAAAGTCAAGAAGCTTCAACTcaacaa
ctaactcaacaactGCAGAACGCCATCAGTGATTTATCAACTTTGAAAAG
GGATACACAAGATGCTCTCAACCAATTCAAAGACCATCAGAAAACCTCGA
TTGAAAAATTCAATAAGAAattggaaagaaaaagaaaaatcgacCAAGTA
ATTTTTAATAAACCAGGAAACGAAGAGCAGTACAAACATGCCAAACAAGT
ATTAGAATCAATGGAGAATGTTGAAGAAGCTATCACCGAAAATCGTCTAG
AGGACGCCAAAAAAGCATTAGAGGAGGGTAAGGAGCTTGTTAATTATCGA
ATGAAAATTGTTAAGATAGCGGATAGGGAAGGATGGGGCTGCGTGAAGCA
TTTTATAGCTGACAATTTGGTTTCGGGAACAGAAGAGGAAAAGCGTCTCA
AGAAAGCTATAAAGGACTACTCTAAATCCAAATTaaaacacgcaaaaaat
agAGGGAACTCTGACaataacaaaaaatttcgaCCTTATTCGTCATCAAC
ATTTACACCATATCAAAACGATAGGAGNN
Run BLAST on NCBI

protein sequence of TCONS_00073093-protein

>TCONS_00073093-protein ID=TCONS_00073093-protein|Name=TCONS_00073093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MAESESQEASTQQLTQQLQNAISDLSTLKRDTQDALNQFKDHQKTSIEKF
NKKLERKRKIDQVIFNKPGNEEQYKHAKQVLESMENVEEAITENRLEDAK
KALEEGKELVNYRMKIVKIADREGWGCVKHFIADNLVSGTEEEKRLKKAI
KDYSKSKLKHAKNRGNSDNNKKFRPYSSSTFTPYQNDRX
Run BLAST on NCBI

transcript from alignment at scaffold_86:41765..42443

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073093 ID=TCONS_00073093|Name=TCONS_00073093|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at scaffold_86:41765..42443 (Clytia hemisphaerica)
NNCTCCTATCGTTTTGATATGGTGTAAATGTTGATGACGAATAAGGtcga
aattttttgttattGTCAGAGTTCCCTctattttttgcgtgttttAATTT
GGATTTAGAGTAGTCCTTTATAGCTTTCTTGAGACGCTTTTCCTCTTCTG
TTCCCGAAACCAAATTGTCAGCTATAAAATGCTTCACGCAGCCCCATCCT
TCCCTATCCGCTATCTTAACAATTTTCATTCGATAATTAACAAGCTCCTT
ACCCTCCTCTAATGCTTTTTTGGCGTCCTCTAGACGATTTTCGGTGATAG
CTTCTTCAACATTCTCCATTGATTCTAATACTTGTTTGGCATGTTTGTAC
TGCTCTTCGTTTCCTGGTTTATTAAAAATTACTTGgtcgatttttctttt
tctttccaatTTCTTATTGAATTTTTCAATCGAGGTTTTCTGATGGTCTT
TGAATTGGTTGAGAGCATCTTGTGTATCCCTTTTCAAAGTTGATAAATCA
CTGATGGCGTTCTGCagttgttgagttagttgttgAGTTGAAGCTTCTTG
ACTTTCAGATTCTGCCATTTTGGAACGCGACCTTACGTTTGATGCGAGAT
GACACGAGTGATAACTTCTCCCCTTTTATGCGCATGCTCAATAATTCGCA
TGCCGGAACATTCGTCCGGAACCGATANN

Coding sequence (CDS) from alignment at scaffold_86:41765..42443

>TCONS_00073093 ID=TCONS_00073093|Name=TCONS_00073093|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_86:41765..42443 (Clytia hemisphaerica)
NCTCCTATCGTTTTGATATGGTGTAAATGTTGATGACGAATAAGGtcgaa
attttttgttattGTCAGAGTTCCCTctattttttgcgtgttttAATTTG
GATTTAGAGTAGTCCTTTATAGCTTTCTTGAGACGCTTTTCCTCTTCTGT
TCCCGAAACCAAATTGTCAGCTATAAAATGCTTCACGCAGCCCCATCCTT
CCCTATCCGCTATCTTAACAATTTTCATTCGATAATTAACAAGCTCCTTA
CCCTCCTCTAATGCTTTTTTGGCGTCCTCTAGACGATTTTCGGTGATAGC
TTCTTCAACATTCTCCATTGATTCTAATACTTGTTTGGCATGTTTGTACT
GCTCTTCGTTTCCTGGTTTATTAAAAATTACTTGgtcgatttttcttttt
ctttccaatTTCTTATTGAATTTTTCAATCGAGGTTTTCTGATGGTCTTT
GAATTGGTTGAGAGCATCTTGTGTATCCCTTTTCAAAGTTGATAAATCAC
TGATGGCGTTCTGCagttgttgagttagttgttgAGTTGAAGCTTCTTGA
CTTTCAGATTCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045310XLOC_045310Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073093-proteinTCONS_00073093-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073093-exon-scaffold_86-1491911889:41765..42443TCONS_00073093-exon-scaffold_86-1491911889:41765..42443Clytia hemisphaericaexon
TCONS_00073093-exon-scaffold_86-1510915933:41765..42443TCONS_00073093-exon-scaffold_86-1510915933:41765..42443Clytia hemisphaericaexon
TCONS_00073093-exon-scaffold_86-1575043694:41765..42443TCONS_00073093-exon-scaffold_86-1575043694:41765..42443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:41765..42443 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.2665	54.616	33.3911	21.7867	7.066	4.25614	16.0128	15.2571	8.87406	10.1496	4.62656	4.98449	4.84716	4.85613	1.92933	2.71113	3.68445	2.38827	1.86399	2.73668	2.7663	2.12798	21.6035	24.4189	2.94646	4.87768	2.14292	1.61539	17.4546	9.64466
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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