|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072522 ID=TCONS_00072522|Name=TCONS_00072522|organism=Clytia hemisphaerica|type=transcript|length=649bp GTAATGTTGGTTTAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACT TTTCCATCCACTTATAAATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGA AAATGAAACTGTCTTTGGGATATACAACACTAACGATCATTGGAATCTAT TGCTTATATTTCCAAAACAAAAGCAACTTTGGTTGGCTAACCCACTTGGT GAAGGAACAATTGAACAACAAAATATTGTCAGGACATGGGAATCGATAAT GGCTTTGAACTTCAAAGAATCCACTCCTTGGACAATATATTCGCAGCAAC ATGCAATTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTT TTAGAATCATTCCTCCAGAGTAGGACATTACCGTCAAATTTTGAGTTAAA AGACGTATTTGCGTACCGTCAAAGAATTGGGTCGCAACTTCTCCGCAGTG GAGGTTATGGAACTTGGACCAAACGGATATGTAGGATATGTGGTAGAAAT GATCCACCAAGATGTAATTTTTCAAGTGTTCCCAAACGCACGAAATGGAT TGAATGTGAAAACTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTG GATCGGACGAATCATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAT Run BLAST on NCBI protein sequence of TCONS_00072522-protein >TCONS_00072522-protein ID=TCONS_00072522-protein|Name=TCONS_00072522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
NVGLIDCTVLGQAISTFPSTYKFPDGVKAVLRENETVFGIYNTNDHWNLL LIFPKQKQLWLANPLGEGTIEQQNIVRTWESIMALNFKESTPWTIYSQQH AIQEDAVSCGVFCLKFLESFLQSRTLPSNFELKDVFAYRQRIGSQLLRSG GYGTWTKRICRICGRNDPPRCNFSSVPKRTKWIECENCKPKRWFHLLCLG SDESSKDMSFDCDKV Run BLAST on NCBI transcript from alignment at scaffold_79:22..2866+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072522 ID=TCONS_00072522|Name=TCONS_00072522|organism=Clytia hemisphaerica|type=transcript|length=2845bp|location=Sequence derived from alignment at scaffold_79:22..2866+ (Clytia hemisphaerica) GTAATGTTGGTTTAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACT
TTTCCATCCACTTATAAATTTCCTGATGGCGTCAAGGTACGTTTGACTCT
TGAAAATAATTCATCATCCAAGGCAACTTTTAGCCCAAGAGCTATAGAGT
AGTCCAGTACCTAGCTAATCTGGAATTTATAAATTCAGTGTAGTATTTTA
ATAAAGGAGATGTATCAGATTCCCTTTAATCTTctcaatgaatttttttt
ataaggaatgtGTCAAAAGAATGCAAAAGACATATTCTAATAagtaattt
tcatcaaaattttcaggcTGTTCTTCGTGAAAATGAAACTGTCTTTGGGA
TATACAACACTAACGATCATTGGAATCTATTGGtaagaatgaaatttttc
attctATGGTGATGAAATGCTTGAGTTTAAAAATGCTAACAATTTGTTTc
caataaaaaaatgatttcgattttcgatttttgataatgaaatgtttttg
aaaatctctATCTTTCTTTATCTTTGTAGCTTATATTTCCAAAACAAAAG
CAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACAACAAAA
TATTGTCAGGACATGGGAGTaggttttgtttataaatattaGACAGTTTC
TCAGTTAGTATTTTATGGTTTGTGGTATTTAACAAGCTGTTCTGTCTTTC
GTAAGAGACTTTCTCTGATTATTGCCTACCTAAAAATCTTAAACATGCCT
TTTTTCCTGTAAATATCATTTGCAAGTTCACTATCTTGTTACATTGTTTA
TAGGCCTCAAAATGGAGAACGTGTTGACCATGAGAGTTGAGTTATGTTAA
CTTAGTCTGTTTCATTCTAAGAGAGATGGTGTATTCACTGAGCTTTATAA
AAATCCGTGCTGAAAATTTGTACCCAGCAAGCAAGTACTACTAAGCACAA
GAGCGtttgaagattgaaaatttctcattttttcctAGTGAGTAATAAAG
AATGACTTTTTTTTAGATCGATAATGGCTTTGAACTTCAAAGAATCCACT
CCTTGGACAATATATTCGCAGCAACATGCAATTCAAGAGGATGCTGTCTC
GTGTGGTGTTTTCTGTCTGAAGGTAATTTGCTTGAGTGTTTGCATTTTTG
TGCAAAGCCACCTAGCCAGCTCGACCTGGTTAAACAAATGTCCATTTGTC
GACAACACCACCCCTTTTTTATCTGAGATAGTACAACTTACCATTTGGTA
TACTTTAATTAAGTTGTAGTTAGTGGaccaaaattattttcaaaatgtct
aGATGTATAGTTTCTTCTTCAAAATTATCAAGTTATCATCAAGCTAACTA
AAAtatgtctcaaaagtatgtgaaCATCTTAGTTTTATGATTTATCAGCA
CCTATTCATGCTATATTAGAAAGTTATAATACACCGTTGgaaacatattt
tcaaaaagactaatctaaagaaaatttttttttgaaaaattgaaagatga
aaaagaataaaatcaaGATTCTTCGTTTAAATTATTCTCCATATTCTATT
ATTATtctgaaaatatctttccaacggtgtataactttcTAGCATAGCAT
AAATGGGTCCcgagaaaatgctcaaaaaactAAAGTatccacatactttt
gagacagacttttttTCAATACACCACCTTTCTTGCTTGAGTCCTCATAG
GGACTTTCTTCATGATAATCTCGAAAGggcggggggtactagggttggcg
gttgaggggtatgtgcggacgagACCTCCAAAAACCAAACCTTAGAGTCC
AAATTTTAGAGAAGAAGTCACCCTTAGATAGAATTTTACTATTTACtctc
gaaattaaaaaaaaattaaaaaaatgttgaatttcCCAACCCTTATagga
attgatttgaaatttctgatttttgtaacccttagagaggtCAGcgcata
cccagcacccatttttgcctaagtacccccactCCGTGATGTTAATTTAT
CTTTCCAGTTTTTAGAATCATTCCTCCAGAGTAGGACATTACCGTCAAAT
TTTGAGTTAAAAGACGTATTTGCGTACCGTCAAAGAATTGGGTCGCAACT
TCTCCGCAGTGGAGGTATGATTTTAGGCTCTTTTTTTCCAAACAGTGCTT
CTATCCACCATTTTCAAGCTAACTTATATTCACACACAGAGTtttattaa
aactttttattaaaaCTCTGAAGGGTCTTTTAACCGTTTTTTGTTTATCG
GGTACACTGACATTACATGATATGGGTCAGCTCGTCCACTAACACAAAAA
TGTTTTAGAGGGAAGGTGTTACGTTTTTCATTActgttgttttgatgttt
cttacCTAGTTTGTTCGGTCGATTCTAATAGGTTATGGAACTTGGACCAA
ACGGATATGTAGGATATGTGGTAGAAATGATCCACCAAGATGTAATTTTT
CAAGTGTTCCCAAACGCACGAAATGGGTATGTTTATAACTTTTCACATTT
CTGTAACAGCTCGAACATCCATTATCCACGACATTCTTCATtgttcaaaa
aaatgtcagataTCTTTTAAGGGAGGTCGAAGTCAAAAAATATCTCTTAG
ATCGATTCATCTATCAGTTTGAAATTCCGGCTCATACCAAATGGTATGGG
TGTTATAACTCCTTTTTAAAATACACTGTCGTGTGTGATTTAAATCTTCT
AGATGAGATATCTAAGGtgattatttttaaacaatcacTTTCAGATTGAA
TGTGAAAACTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGATC
GGACGAATCATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAT Coding sequence (CDS) from alignment at scaffold_79:22..2866+ >TCONS_00072522 ID=TCONS_00072522|Name=TCONS_00072522|organism=Clytia hemisphaerica|type=CDS|length=4515bp|location=Sequence derived from alignment at scaffold_79:22..2866+ (Clytia hemisphaerica) AATGTTGGTTTAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACTTT TCCATCCACTTATAAATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGAAA ATGAAACTGTCTTTGGGATATACAACACTAACGATCATTGGAATCTATTG CTTATATTTCCAAAACAAAAGCAACTTTGGTTGGCTAACCCACTTGGTGA AGGAACAATTGAACAACAAAATATTGTCAGGACATGGGAATCGATAATGG CTTTGAACTTCAAAGAATCCACTCCTTGGACAATATATTCGCAGCAACAT GCAATTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTTTT AGAATCATTCCTCCAGAGTAGGACATTACCGTCAAATTTTGAGTTAAAAG ACGTATTTGCGTACCGTCAAAGAATTGGGTCGCAACTTCTCCGCAGTGGA GGTTATGGAACTTGGACCAAACGGATATGTAGGATATGTGGTAGAAATGA TCCACCAAGATGTAATTTTTCAAGTGTTCCCAAACGCACGAAATGGATTG AATGTGAAAACTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGA TCGGACGAATCATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAATGT TGGTTTAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACTTTTCCAT CCACTTATAAATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGAAAATGAA ACTGTCTTTGGGATATACAACACTAACGATCATTGGAATCTATTGCTTAT ATTTCCAAAACAAAAGCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAA CAATTGAACAACAAAATATTGTCAGGACATGGGAATCGATAATGGCTTTG AACTTCAAAGAATCCACTCCTTGGACAATATATTCGCAGCAACATGCAAT TCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTTTTAGAAT CATTCCTCCAGAGTAGGACATTACCGTCAAATTTTGAGTTAAAAGACGTA TTTGCGTACCGTCAAAGAATTGGGTCGCAACTTCTCCGCAGTGGAGGTTA TGGAACTTGGACCAAACGGATATGTAGGATATGTGGTAGAAATGATCCAC CAAGATGTAATTTTTCAAGTGTTCCCAAACGCACGAAATGGATTGAATGT GAAAACTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGATCGGA CGAATCATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAATGTTGGTT TAATCGATTGCACAGTGTTGGGTCAAGCTATTTCGACTTTTCCATCCACT TATAAATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGAAAATGAAACTGT CTTTGGGATATACAACACTAACGATCATTGGAATCTATTGCTTATATTTC CAAAACAAAAGCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATT GAACAACAAAATATTGTCAGGACATGGGAATCGATAATGGCTTTGAACTT CAAAGAATCCACTCCTTGGACAATATATTCGCAGCAACATGCAATTCAAG AGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTTTTAGAATCATTC CTCCAGAGTAGGACATTACCGTCAAATTTTGAGTTAAAAGACGTATTTGC GTACCGTCAAAGAATTGGGTCGCAACTTCTCCGCAGTGGAGGTTATGGAA CTTGGACCAAACGGATATGTAGGATATGTGGTAGAAATGATCCACCAAGA TGTAATTTTTCAAGTGTTCCCAAACGCACGAAATGGATTGAATGTGAAAA CTGCAAGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGATCGGACGAAT CATCCAAGGATATGTCCTTCGATTGTGATAAGGTGAATGTTGGTTTAATC GATTGCACAGTGTTGGGTCAAGCTATTTCGACTTTTCCATCCACTTATAA ATTTCCTGATGGCGTCAAGgcTGTTCTTCGTGAAAATGAAACTGTCTTTG GGATATACAACACTAACGATCATTGGAATCTATTGCTTATATTTCCAAAA CAAAAGCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACA ACAAAATATTGTCAGGACATGGGAATCGATAATGGCTTTGAACTTCAAAG AATCCACTCCTTGGACAATATATTCGCAGCAACATGCAATTCAAGAGGAT GCTGTCTCGTGTGGTGTTTTCTGTCTGAAGTTTTTAGAATCATTCCTCCA GAGTAGGACATTACCGTCAAATTTTGAGTTAAAAGACGTATTTGCGTACC GTCAAAGAATTGGGTCGCAACTTCTCCGCAGTGGAGGTTATGGAACTTGG ACCAAACGGATATGTAGGATATGTGGTAGAAATGATCCACCAAGATGTAA TTTTTCAAGTGTTCCCAAACGCACGAAATGGATTGAATGTGAAAACTGCA AGCCAAAAAGATGGTTCCACCTCTTATGTCTTGGATCGGACGAATCATCC AAGGATATGTCCTTCGATTGTGATAAGGTGAATGTTGGTTTAATCGATTG CACAGTGTTGGGTCAAGCTATTTCGACTTTTCCATCCACTTATAAATTTC CTGATGGCGTCAAGgcTGTTCTTCGTGAAAATGAAACTGTCTTTGGGATA TACAACACTAACGATCATTGGAATCTATTGCTTATATTTCCAAAACAAAA GCAACTTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACAACAAA ATATTGTCAGGACATGGGAATCGATAATGGCTTTGAACTTCAAAGAATCC ACTCCTTGGACAATATATTCGCAGCAACATGCAATTCAAGAGGATGCTGT CTCGTGTGGTGTTTTCTGTCTGAAGTTTTTAGAATCATTCCTCCAGAGTA GGACATTACCGTCAAATTTTGAGTTAAAAGACGTATTTGCGTACCGTCAA AGAATTGGGTCGCAACTTCTCCGCAGTGGAGGTTATGGAACTTGGACCAA ACGGATATGTAGGATATGTGGTAGAAATGATCCACCAAGATGTAATTTTT CAAGTGTTCCCAAACGCACGAAATGGATTGAATGTGAAAACTGCAAGCCA AAAAGATGGTTCCACCTCTTATGTCTTGGATCGGACGAATCATCCAAGGA TATGTCCTTCGATTGTGATAAGGTGAATGTTGGTTTAATCGATTGCACAG TGTTGGGTCAAGCTATTTCGACTTTTCCATCCACTTATAAATTTCCTGAT GGCGTCAAGgcTGTTCTTCGTGAAAATGAAACTGTCTTTGGGATATACAA CACTAACGATCATTGGAATCTATTGCTTATATTTCCAAAACAAAAGCAAC TTTGGTTGGCTAACCCACTTGGTGAAGGAACAATTGAACAACAAAATATT GTCAGGACATGGGAATCGATAATGGCTTTGAACTTCAAAGAATCCACTCC TTGGACAATATATTCGCAGCAACATGCAATTCAAGAGGATGCTGTCTCGT GTGGTGTTTTCTGTCTGAAGTTTTTAGAATCATTCCTCCAGAGTAGGACA TTACCGTCAAATTTTGAGTTAAAAGACGTATTTGCGTACCGTCAAAGAAT TGGGTCGCAACTTCTCCGCAGTGGAGGTTATGGAACTTGGACCAAACGGA TATGTAGGATATGTGGTAGAAATGATCCACCAAGATGTAATTTTTCAAGT GTTCCCAAACGCACGAAATGGATTGAATGTGAAAACTGCAAGCCAAAAAG ATGGTTCCACCTCTTATGTCTTGGATCGGACGAATCATCCAAGGATATGT CCTTCGATTGTGATAAGGTGAATGTTGGTTTAATCGATTGCACAGTGTTG GGTCAAGCTATTTCGACTTTTCCATCCACTTATAAATTTCCTGATGGCGT CAAGgcTGTTCTTCGTGAAAATGAAACTGTCTTTGGGATATACAACACTA ACGATCATTGGAATCTATTGCTTATATTTCCAAAACAAAAGCAACTTTGG TTGGCTAACCCACTTGGTGAAGGAACAATTGAACAACAAAATATTGTCAG GACATGGGAATCGATAATGGCTTTGAACTTCAAAGAATCCACTCCTTGGA CAATATATTCGCAGCAACATGCAATTCAAGAGGATGCTGTCTCGTGTGGT GTTTTCTGTCTGAAGTTTTTAGAATCATTCCTCCAGAGTAGGACATTACC GTCAAATTTTGAGTTAAAAGACGTATTTGCGTACCGTCAAAGAATTGGGT CGCAACTTCTCCGCAGTGGAGGTTATGGAACTTGGACCAAACGGATATGT AGGATATGTGGTAGAAATGATCCACCAAGATGTAATTTTTCAAGTGTTCC CAAACGCACGAAATGGATTGAATGTGAAAACTGCAAGCCAAAAAGATGGT TCCACCTCTTATGTCTTGGATCGGACGAATCATCCAAGGATATGTCCTTC GATTGTGATAAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072522-exon-scaffold_79-1491911889:22..107 | TCONS_00072522-exon-scaffold_79-1491911889:22..107 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1510915933:22..107 | TCONS_00072522-exon-scaffold_79-1510915933:22..107 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1575043694:22..107 | TCONS_00072522-exon-scaffold_79-1575043694:22..107 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1491911889:338..403 | TCONS_00072522-exon-scaffold_79-1491911889:338..403 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1510915933:338..403 | TCONS_00072522-exon-scaffold_79-1510915933:338..403 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1575043694:338..403 | TCONS_00072522-exon-scaffold_79-1575043694:338..403 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1491911889:551..639 | TCONS_00072522-exon-scaffold_79-1491911889:551..639 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1510915933:551..639 | TCONS_00072522-exon-scaffold_79-1510915933:551..639 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1575043694:551..639 | TCONS_00072522-exon-scaffold_79-1575043694:551..639 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1491911889:1038..1143 | TCONS_00072522-exon-scaffold_79-1491911889:1038..1143 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1510915933:1038..1143 | TCONS_00072522-exon-scaffold_79-1510915933:1038..1143 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1575043694:1038..1143 | TCONS_00072522-exon-scaffold_79-1575043694:1038..1143 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1491911889:2030..2135 | TCONS_00072522-exon-scaffold_79-1491911889:2030..2135 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1510915933:2030..2135 | TCONS_00072522-exon-scaffold_79-1510915933:2030..2135 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1575043694:2030..2135 | TCONS_00072522-exon-scaffold_79-1575043694:2030..2135 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1491911889:2403..2497 | TCONS_00072522-exon-scaffold_79-1491911889:2403..2497 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1510915933:2403..2497 | TCONS_00072522-exon-scaffold_79-1510915933:2403..2497 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1575043694:2403..2497 | TCONS_00072522-exon-scaffold_79-1575043694:2403..2497 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1491911889:2766..2866 | TCONS_00072522-exon-scaffold_79-1491911889:2766..2866 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1510915933:2766..2866 | TCONS_00072522-exon-scaffold_79-1510915933:2766..2866 | Clytia hemisphaerica | exon |
TCONS_00072522-exon-scaffold_79-1575043694:2766..2866 | TCONS_00072522-exon-scaffold_79-1575043694:2766..2866 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_79 | supercontig | scaffold_79:22..2866 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0006508 | proteolysis |
Vocabulary: Molecular Function
Term | Definition |
GO:0008234 | cysteine-type peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006508 |
proteolysis |
molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
The following BLAST results are available for this feature:
|