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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072454 ID=TCONS_00072454|Name=TCONS_00072454|organism=Clytia hemisphaerica|type=transcript|length=871bp
TCAAGATTCAAATCAGGAGCGCCAATAATAACACTCGAAGTAAAAGCCAG
TGAAGAAGgagaaacatcaaaaataatACCCAAGCCAGAAGAGCTTAAAG
ATTATGCATCTCTCGCAACTGAACTCGAAAAGCTGTCAGCATCAAAACTC
TCAAGCGGTGCTTCAGGAAGGCCAGTGAAGCTAAAACGAGGGAAATCCAT
CATTTGGCCGTGGAACGTCATTTGTGGGGTATGCGAGAAGACTTGCATGG
TGCGGTTTGATGGTACGACAGCAGGACGAGTAGATTACTTCAAAAAGAAA
CATTACGACGAgtgcttaaaaaagaaaaatatgaaagagAAGAGCGAAAA
GAAGAGTGGAAAGAAGAAACAATTAAACGTAAACGACATGCTTCAATCAC
CACCGCCTAAAAAGCGATTGAAAAGATTCCCGGCAAAAGAAATCGATTCC
GATGTTGAAGTTAGTAGTGGGGATGAACAAACTGAATGCCttgaaaagta
aagaaatacGATTACTTGGATTTTAATGCACCTCCACTTCCCTTTTCATA
TTTCAGCTGCATTGCTCTATAATCTAATTTTGGACAATAATTTTGGAATA
AAGGATAAGAGAAAGATCATTTAAAAGATTCCTATCCATTTTCCAGATAG
CCTTTCCTTAACTGGTAAACTTTTTTATTATAGGTAGATTGAATCTTATT
TTTGTAGCGAGAGCTGTATCttttagtttttatatttatattattgaaaT
AGAGTAAGACATCATTTTAGTCAACTCTGGTTATCTACTTTCATGAAATA
AACTCATCAAAACATTTAACAATTTTTGTCTTCCATCAGGCCAGATTCGG
ATCTAGAAGTGACAGATTGGG Run BLAST on NCBI protein sequence of TCONS_00072454-protein >TCONS_00072454-protein ID=TCONS_00072454-protein|Name=TCONS_00072454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
SRFKSGAPIITLEVKASEEGETSKIIPKPEELKDYASLATELEKLSASKL
SSGASGRPVKLKRGKSIIWPWNVICGVCEKTCMVRFDGTTAGRVDYFKKK
HYDECLKKKNMKEKSEKKSGKKKQLNVNDMLQSPPPKKRLKRFPAKEIDS
DVEVSSGDEQTECLEK Run BLAST on NCBI transcript from alignment at scaffold_77:553175..554872- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072454 ID=TCONS_00072454|Name=TCONS_00072454|organism=Clytia hemisphaerica|type=transcript|length=1698bp|location=Sequence derived from alignment at scaffold_77:553175..554872- (Clytia hemisphaerica)
TCAAGATTCAAATCAGGAGCGCCAATAATAACACTCGAAGTAAAAGCCAG
TGAAGAAGGAGAAACATCAAAAATAATACCCAAGCCAGAAGAGCTTAAAG
ATTATGCATCTCTCGCAACTGGTTAGTTATAGTAATTGAATGGAAAAGCA
TACATACAAGACATTTTGTCTGTGATGTTATATTTCATAACAGTATCCAA
AATGCACTATTCATTGTGCGAGGTACCCACAGTGATTGATTTAAATTGAA
TAATAAAATCTTTTAGGAATATGGAGGAATCAAATTTTGTCTTGGAAAGG
GGGGTCCTGAGAAAATTTCTTTCATTGTGTTTATTTCATTCCAGAACTCG
AAAAGCTGTCAGCATCAAAACTCTCAAGCGGTGCTTCAGGAAGGCCAGTG
AAGCTAAAACGAGGGAAATCCATCATTTGGCCGTGGAACGTCATTTGTGG
GGTATGCGAGAAGACTTGCATGGTGCGGTTTGATGGTACGACAGCAGGAC
GAGTAGATTACTTCAAAAAGAGTAAGAAATTTTCTACTAATGGTTATAGC
GTAGTGCTGAGTTTAAAAATGAATAGCAGATTTCTAAGGTTTAATTGGGA
TTGATTTTTACTTATTATTATTATGCCATTGACGTGCTCCTTTAGGGGCA
AGCTTTTCAGTGAATTGGTAGCCTGGGACACTTACGCAAGTAAATGGTTG
CAGCGTTGTGGGTATGTGCTACCCTTAAGGGTCTGAAAAGTACTAAAAAT
AAATACATGAAAGTACCAAAATAAGAAAATTAAATTTCCCACCAAGAGTC
GGAAAGAAAGGAAAATTTTGAAAAGATTGAAATTTAGTCAAATAAGTTCC
AATAAGGATTTCAAAATCACGAAATCGTCCGTCCGAGGGTCAAAAGTCGG
GCGGCATATACCTTTCAGCTCGCAACCCTAGTACCTTCCGGGATTAGTAG
TCTGCTAGATAGCTCCGTTTTCATAATTACAATTCAGGTGTTTTGGCATT
TTAGGAGATACGTATGTCTTTGCGCTTTTTCTAATTAGCAGATGTTTCAT
TAAAGCAGGCAATTATAAATATCCTACCACTTTTTTAAAATTCGGAAATG
TTACCAAGTTTCCCCTTTCTTTCAGAACATTACGACGAGTGCTTAAAAAA
GAAAAATATGAAAGAGAAGAGCGAAAAGAAGAGTGGAAAGAAGAAACAAT
TAAACGTAAACGACATGCTTCAATCACCACCGCCTAAAAAGCGATTGAAA
AGATTCCCGGCAAAAGAAATCGATTCCGATGTTGAAGTTAGTAGTGGGGA
TGAACAAACTGAATGCCTTGAAAAGTAAAGAAATACGATTACTTGGATTT
TAATGCACCTCCACTTCCCTTTTCATATTTCAGCTGCATTGCTCTATAAT
CTAATTTTGGACAATAATTTTGGAATAAAGGATAAGAGAAAGATCATTTA
AAAGATTCCTATCCATTTTCCAGATAGCCTTTCCTTAACTGGTAAACTTT
TTTATTATAGGTAGATTGAATCTTATTTTTGTAGCGAGAGCTGTATCTTT
TAGTTTTTATATTTATATTATTGAAATAGAGTAAGACATCATTTTAGTCA
ACTCTGGTTATCTACTTTCATGAAATAAACTCATCAAAACATTTAACAAT
TTTTGTCTTCCATCAGGCCAGATTCGGATCTAGAAGTGACAGATTGGG Coding sequence (CDS) from alignment at scaffold_77:553175..554872- >TCONS_00072454 ID=TCONS_00072454|Name=TCONS_00072454|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_77:553175..554872- (Clytia hemisphaerica)
AACATTACGACGAGTGCTTAAAAAAGAAAAATATGAAAGAGAAGAGCGAA
AAGAAGAGTGGAAAGAAGAAACAATTAAACGTAAACGACATGCTTCAATC
ACCACCGCCTAAAAAGCGATTGAAAAGATTCCCGGCAAAAGAAATCGATT
CCGATGTTGAAGTTAGTAGTGGGGATGAACAAACTGAATGCCTTGAAAAG
TAAAACTCGAAAAGCTGTCAGCATCAAAACTCTCAAGCGGTGCTTCAGGA
AGGCCAGTGAAGCTAAAACGAGGGAAATCCATCATTTGGCCGTGGAACGT
CATTTGTGGGGTATGCGAGAAGACTTGCATGGTGCGGTTTGATGGTACGA
CAGCAGGACGAGTAGATTACTTCAAAAAGATCAAGATTCAAATCAGGAGC
GCCAATAATAACACTCGAAGTAAAAGCCAGTGAAGAAGGAGAAACATCAA
AAATAATACCCAAGCCAGAAGAGCTTAAAGATTATGCATCTCTCGCAACT
GAACATTACGACGAGTGCTTAAAAAAGAAAAATATGAAAGAGAAGAGCGA
AAAGAAGAGTGGAAAGAAGAAACAATTAAACGTAAACGACATGCTTCAAT
CACCACCGCCTAAAAAGCGATTGAAAAGATTCCCGGCAAAAGAAATCGAT
TCCGATGTTGAAGTTAGTAGTGGGGATGAACAAACTGAATGCCTTGAAAA
GTAAAACTCGAAAAGCTGTCAGCATCAAAACTCTCAAGCGGTGCTTCAGG
AAGGCCAGTGAAGCTAAAACGAGGGAAATCCATCATTTGGCCGTGGAACG
TCATTTGTGGGGTATGCGAGAAGACTTGCATGGTGCGGTTTGATGGTACG
ACAGCAGGACGAGTAGATTACTTCAAAAAGATCAAGATTCAAATCAGGAG
CGCCAATAATAACACTCGAAGTAAAAGCCAGTGAAGAAGGAGAAACATCA
AAAATAATACCCAAGCCAGAAGAGCTTAAAGATTATGCATCTCTCGCAAC
TGAACATTACGACGAGTGCTTAAAAAAGAAAAATATGAAAGAGAAGAGCG
AAAAGAAGAGTGGAAAGAAGAAACAATTAAACGTAAACGACATGCTTCAA
TCACCACCGCCTAAAAAGCGATTGAAAAGATTCCCGGCAAAAGAAATCGA
TTCCGATGTTGAAGTTAGTAGTGGGGATGAACAAACTGAATGCCTTGAAA
AGTAAAACTCGAAAAGCTGTCAGCATCAAAACTCTCAAGCGGTGCTTCAG
GAAGGCCAGTGAAGCTAAAACGAGGGAAATCCATCATTTGGCCGTGGAAC
GTCATTTGTGGGGTATGCGAGAAGACTTGCATGGTGCGGTTTGATGGTAC
GACAGCAGGACGAGTAGATTACTTCAAAAAGATCAAGATTCAAATCAGGA
GCGCCAATAATAACACTCGAAGTAAAAGCCAGTGAAGAAGGAGAAACATC
AAAAATAATACCCAAGCCAGAAGAGCTTAAAGATTATGCATCTCTCGCAA
CTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072454-exon-scaffold_77-1575043694:554752..554872 | TCONS_00072454-exon-scaffold_77-1575043694:554752..554872 | Clytia hemisphaerica | exon |
| TCONS_00072454-exon-scaffold_77-1575043694:554352..554528 | TCONS_00072454-exon-scaffold_77-1575043694:554352..554528 | Clytia hemisphaerica | exon |
| TCONS_00072454-exon-scaffold_77-1575043694:553175..553747 | TCONS_00072454-exon-scaffold_77-1575043694:553175..553747 | Clytia hemisphaerica | exon |
| TCONS_00072454-exon-scaffold_77-1510915933:554752..554872 | TCONS_00072454-exon-scaffold_77-1510915933:554752..554872 | Clytia hemisphaerica | exon |
| TCONS_00072454-exon-scaffold_77-1510915933:554352..554528 | TCONS_00072454-exon-scaffold_77-1510915933:554352..554528 | Clytia hemisphaerica | exon |
| TCONS_00072454-exon-scaffold_77-1510915933:553175..553747 | TCONS_00072454-exon-scaffold_77-1510915933:553175..553747 | Clytia hemisphaerica | exon |
| TCONS_00072454-exon-scaffold_77-1491911889:554752..554872 | TCONS_00072454-exon-scaffold_77-1491911889:554752..554872 | Clytia hemisphaerica | exon |
| TCONS_00072454-exon-scaffold_77-1491911889:554352..554528 | TCONS_00072454-exon-scaffold_77-1491911889:554352..554528 | Clytia hemisphaerica | exon |
| TCONS_00072454-exon-scaffold_77-1491911889:553175..553747 | TCONS_00072454-exon-scaffold_77-1491911889:553175..553747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:553175..554872 - |
Blast
The following BLAST results are available for this feature:
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