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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072423 ID=TCONS_00072423|Name=TCONS_00072423|organism=Clytia hemisphaerica|type=transcript|length=1078bp
AATTTATCGGACACGCCTACATCTTACGTCAAAAAacgtcaatgcaatgt
tttCGCTAGACGCGTAATAAAAGATACCAAAGTATTGCTACAAAAATTCC
CAACGTCAATTTCAAATCAACAAACATTGCTCCTTGATGTCTAATGAAGC
AATATTTTGTCTATATACTATGGATATATTTATTCTTcttattaatcatt
tttgatATGCTACAAAACTTTTACGACATGGCAAGAAAAAGAGTTCGTAG
AAAACCGAAGAAGTCAAAGCAAAATCCAGAATCTCAACCAAATCCAGAGA
TTCCTAAAGATTCATCGGAGACGACAAAATCGGATGAGAATCCTACTGTA
AACACTCTGGAAAACACAAATGATGTACCCAAAACTAATGAAGATACTCA
GAGGAGAAACGAATCATCATCAAAGACAGTTTCCATGCCCATGCAAGAAG
ACCACccaaaaccaaaaatttgtTCTTTCGACGAGTTCTTAAAGAACGAA
GACTTTGACAAGAAACTCATGGATGAGTTTACAAATCAACCATTTATAAA
CAAGATACAAGCAATATTCGATaaagtgttgaaaattttgatggaaCAGT
ATCGTAGGCTCTATGATGATTATTGCAAGCTTTGCAAAAAGCAAGGCCTT
AAACCTGCTACTTTTGAAGGCGCCAAAGCTGGTTCAGCTTCTGAGAAAGA
GAGTGAAATGAAATTAAGCCTTCGATTTGCTGCACAAGCTAGCAACGCTC
CGGCGGATGAAATTCTGGCTTTGTATAACGATAGGATACAAAATCAGCGA
TTGTCTGGCTTCATGCAAATAGTGTTGGATGGGATAGACGAAGCATGGGC
TGAGCAAGAAGAACATGATCAAACACGGCCAACGCAATCCTCGACAACAA
ACGCCCAAAAACCTACCCAAACAGGCGCCCAACCACCCATGCAAAAAGCC
GCCAAACAACCTGCCCAACCTGCCACCCAACAAGCTGTCAACGTCAAACA
ACCTACTCAATTGACCGCCCAACAAACTACTCAACCAGCCGCccaaaaat
ccatcaaacaaCCTACCCAATCAACCAC Run BLAST on NCBI transcript from alignment at scaffold_77:232801..237372- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072423 ID=TCONS_00072423|Name=TCONS_00072423|organism=Clytia hemisphaerica|type=transcript|length=4572bp|location=Sequence derived from alignment at scaffold_77:232801..237372- (Clytia hemisphaerica)
AATTTATCGGACACGCCTACATCTTACGTCAAAAAACGTCAATGCAATGT
TTTCGCTAGACGCGTAATAAAAGATACCAAAGTATTGCTACAAAAATTCC
CAACGTCAATTTCAAATCAACAAACATTGCTCCTTGATGTCTAATGAAGC
AATATTTTGTCTATATACTATGGATATATTTATTCTTCTTATTAATCATT
TTTGATATGCTACAAAACTTTTACGACATGGCAAGAAAAAGAGTTCGTAG
AAAACCGAAGAAGTCAAAGCAAAATCCAGAATCTCAACCAAATCCAGAGA
TTCCTAAAGATTCATCGGAGACGACAAAATCGGATGAGAATCCTACTGTA
AACACTCTGGAAAACACAAATGATGTACCCAAAACTAATGAAGATACTCA
GAGTAAGTCAAGGTTTATTTACCTTTTGAGTGAACGATCAAACTCTCACA
TTTATGGAACAGTTTGACTTAAGGATTTTATCTGATATCCCGATGGCTCT
AGTCTGGTTCAACAGCACGGAATTTGTTGAAATCCCTCGGACCAATCCTT
TCAAATTTCAAGCTTTAGCGTGTAGGAAGAAGATTCCTATACATCTAAAT
CAGGTGCAAGATAATTAATAATTTAGAGTAGCCCAAGGAAGGGAGAGCTT
GCTCCTTGATCCGTACATGTGACTCCAGACACCCTTCCTGACTAGGGTAT
CTCTATCTAATCTGTTATTTTGTGATCATGCGTATTTATGCATGTAATAG
TTTATTTCATGTTGACGAAAAGGTAGCAGCAAAGGCTAATAAAAGTCAGC
ACACTACTTTACAAATTTAAAAAAAGCTAATGTTTTGTTGGCAACATCAT
CGTCGCTGCTACTGAGGCTAGATATTGACAGCTTTTGGTTGGCAAAGTTT
TTGTTTGCTTTTTATCAAGCGAAGGTTATCTGTTCTGTGACTTCCTCTCG
CACGCCAAATGAAATCACCATCACATTCGGAGTTCCATTTCTTAGCATTC
TCGCACATCTCTTTGATTTTTCTTCTTTCATTGATGGTGAAATCATCGGT
GATGCTTAGGTGATATCCAAGCCGCTTCAACTTGTTGAAGTTGCTCATGA
TTCTTTCTTTTTCTTCTTCACTTTGCAAGGTCACCTTTATTGGACGCTTT
TTCCTCGGCCTATTTTCATGTTCGAACCCAATACGATGTTGATGCGTTGG
TTTGGTGTCGCGGATAGTACTGTTGACTTTTCCGTGTTGTTTCACGTGTG
CTTCTTGCTACCTTATGCACATGAAGTTTGAATTTTCTTTGAGATACTTT
TAAAGGTACTATGAAGTGCTCACTTGGATGACTTCGGTGCCACTATGCGG
TGTCTATATCTGGTTATCTTATTAAACCTCGGTAACCCGGTGCAAATAAT
AAATATTTTTAGTTGTATGTACCATCGATGTATGCACGAATATTTGATCC
CGATTATCTAAGCCAGAATGTATTATTCTATTGAATGGATACAGAATGTT
GGAGTCTGAAAGTGGCATCGCATGGAAGCTTGATTAAGAAAGGTTAAACA
AGCTGAGGGAAAAGTAATAAACAAATTCTTTGCTGGGAGGAAATTCGGTC
ACCTCCTCAAAATATTGGTCACCTCCCCCGAAGTTATTCTCCTGAATAAG
ACACTTTCTTACGTGTCTGGTTAAATGGAGTTATTATAATGTTTAATTGC
GCTCAGAATTCCACGCTATATTCCAAGGTATAAATCATTTCTGTTGAATG
AATCCGAAATCCGAGAATGTTTCGTATCCTAAAGGGTTTTTTTTTCTGTT
TGATAAAAAAATTCCCATACAGAGACCTCTGCGATGAAGCTTGACTTATA
AATAGCACCACTTCTCTAATCGTCTCCCCTCTCTCACCAACACTCCATTG
CAGCGGTCGGTTTGAAAAATCTCAAATAAGAAAAGACAATGACAACAGAC
CCTCTACGGCAATGAATTTTGAAATAAGCCGTAGATACTGGGTCTGTGTA
CAAACAAGTATGGTTTTCGTTACTGGTAGGAAGTGTTCGTACTGATTGCG
AAACATTTCGGAGCAATTATCTGATATTCCGATGGCGTATTGGCGGCCGC
CCACGCTAAAGCTCTGAAGGAGCGGGCCAATATCACCATTGGAGACCTAT
AGTAGTCATCGTTTGATGTACCGCAGTCGTGTCTAGCTGCCCTTATACTT
TTTGCTTGACTATCGGTTGCACCCGACTGAATTTAGCATGAAAATCTCTG
CTGCCTGAGAAACCTTACAGAAAAATGAAAAATGGTAACCCAAAGGTTCC
AGATGTTAAAATTTTCCCGACCTTCAGAGCTTTAGCGTTTCGGAAGAAAA
TTTCTACATCGAGTACCAGATAACGGAGCAATAAAACGGAGCAGTTCCAA
CCGATGAAAAAAGTGGAGCGAAACCGTTTCCATCCGTCTTGCGTTTAAAA
GCTTAAAATTTTTGCGTTTACACTTGTTTCGGAAGCATTTCGTTTCGGAA
CGATGCATAACCGTAACGCCTGAACATGGTCTAAGATTCATCAATTATAC
CTTTTCAGGGAGAAACGAATCATCATCAAAGACAGTTTCCATGCCCATGC
AAGAAGACCACCCAAAACCAAAAATTTGTTCTTTCGACGAGTTCTTAAAG
AACGAAGACTTTGACAAGAAACTCATGGATGAGTTTACAAATCAACCATT
TATAAACAAGATACAAGCAATATTCGATAAAGTGTTGAAAATTTTGATGG
AACAGTATCGTAGGCTCTATGATGATTATTGCAAGCTTTGCAAAAAGCAA
GGCCTTAAACCTGCTACTTTTGAAGGCGCCAAAGCTGGTTCAGCTTCTGA
GAAAGAGAGTGAAATGAAATTAAGCCTTCGATTTGCTGCACAAGCTAGCA
ACGCTCCGGCGGATGAAATTCTGGCTTTGTATAACGATAGGATACAAAAT
CAGCGATTGTCTGGCTTCATGCAAATAGTGTTGGATGGGATAGACGAAGC
ATGGGCTGAGCAAGGTAAACTTTTAGCACAATTAAAAATGCAGGCATCGG
TTGTAGGGTTTTCAAGCCTCCAAATTAATAGATTGTGGCTCGGAGGAATG
TAGAGCCTAGTCCGAGGAAGGTCTGAAAGGAGATTTTGGCCTATTCTTTT
TCTATGTTTGGCAAAATTAAGCATTTTCATGTTGTTAAATTTCAGAGTGT
ACTTTCTTCTAAATTTCAAGACAATTCATTTTCAAGATCTAGTGAACCTA
ATAGAAAATGCCGTGTCCGCAAAAAAATTTACATTATTCAAACTGAATTA
CCTCGCGATCTAGAAATCGAAATATTAAAAAAACGTCTAACCGTTTTCCG
AAATCTTTTTAAGGTATTTTCTAATTTCTCTACTTTCTGTAAAAACACAA
CACTTTATTCTGATATTCAGGCTTCATCGCAAAAATTGAGTGAGATCATT
CTATATTTTCCCAAGGCAAATTCGTCAACGTTCCACGTAATAACTCGTGA
TTCATAAATTAACATTTTAGAAGAACATGATCAAACACGGCCAACGCAAT
CCTCGACAACAAACGCCCAAAAACCTACCCAAACAGGCGCCCAACCACCC
ATGCAAAAAGCCGCCAAACAACCTGCCCAACCTGCGACCCAACAAGCTGT
CCACGTCAAACAACCTACTCCATTGACCGCCCAACAAACTACTCAACAAG
CCGCCCAAAAATCCGCCAAACAACCTACCCAATCAACCACCCGACAACCT
ACTCAACCAGTTGCCAAACAATCTCTCCAACAAGCCGCCCAACAACCTAC
TCAACTTGCCACCCGACAAGCCGCCAAACTACCTATCCAATCAACCAACC
GACAACCTACTCAACCAGTTGTCCAACAACCTCTCCAACATGCCACCCAA
CAAGCCGTCAAACAACCTACTCAATCGACCACCCAACAACCTACCCAAAA
AGCCACCCAACAACCTACTCAACCAGCCGACAAACAAACTTCCCAAAAAG
CCACCCAACAACCTACTCCAACAGCTATCCAACAAGCCACCAAAAAACCT
ACTCGATCTACTGACAAAAACATTGCGGAATCAATAGAAAGAATTGGTGC
AGCTCTACGAGAACGTCAACAAATAGAATCTATATCGGCGCAAAATACGA
CCGAGCCACCTCAAGGGTCCTCGGGGGCGACGCAAAGAATGCCTCATATA
CAACCGCAACAAAGACTATCTGCGCAACCTGGATTATTTCCGCCACCGTC
GGATAAATTTTCGTCACCACCAGTATTATCTTTACCATCACAANAAGGCA
AATTCGTCAACGTTCCAAGTAATAACTCGTGATTCATAAATTAACATTTT
AGAAGAACATGATCAAACACGACCAACGCAATCCTCGACAACAAACGCCC
AAAAACCTACCCAAACAGGCGCCCAACCACCCATGCAAAAAGCCGCCAAA
CAACCTGCCCAACCTGCCACCCAACAAGCTGTCAACGTCAAACAACCTAC
TCAATTGACCGCCCAACAAACTACTCAACCAGCCGCCCAAAAATCCATCA
AACAACCTACCCAATCAACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072423-exon-scaffold_77-1575043694:236971..237372 | TCONS_00072423-exon-scaffold_77-1575043694:236971..237372 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1575043694:234359..234814 | TCONS_00072423-exon-scaffold_77-1575043694:234359..234814 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1575043694:233787..233852 | TCONS_00072423-exon-scaffold_77-1575043694:233787..233852 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1575043694:232801..232954 | TCONS_00072423-exon-scaffold_77-1575043694:232801..232954 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1510915933:236971..237372 | TCONS_00072423-exon-scaffold_77-1510915933:236971..237372 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1510915933:234359..234814 | TCONS_00072423-exon-scaffold_77-1510915933:234359..234814 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1510915933:233787..233852 | TCONS_00072423-exon-scaffold_77-1510915933:233787..233852 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1510915933:232801..232954 | TCONS_00072423-exon-scaffold_77-1510915933:232801..232954 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1491911889:236971..237372 | TCONS_00072423-exon-scaffold_77-1491911889:236971..237372 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1491911889:234359..234814 | TCONS_00072423-exon-scaffold_77-1491911889:234359..234814 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1491911889:233787..233852 | TCONS_00072423-exon-scaffold_77-1491911889:233787..233852 | Clytia hemisphaerica | exon |
| TCONS_00072423-exon-scaffold_77-1491911889:232801..232954 | TCONS_00072423-exon-scaffold_77-1491911889:232801..232954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:232801..237372 - |
Blast
The following BLAST results are available for this feature:
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