TCONS_00072413 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072413
Unique Name	TCONS_00072413
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	612

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_77:188672..193958-

transcript sequence

>TCONS_00072413 ID=TCONS_00072413|Name=TCONS_00072413|organism=Clytia hemisphaerica|type=transcript|length=612bp
ACAATATCAGCCACAAAATTAAAATCACCGGTAGAAACAAGCAACATTAA
GACGTAACCATATTCTTTGGTTTTTCCCTGCCAAAAACATTGGATGCATT
GCAAAGCTTTATATGGCTCCAGTTCAATTACACAATCCTCCGTTTCTTGA
AAAGTGGTCGATACAATACTTCCTGGAGGAGCCCCTAAAAGGTGTTTCAA
GCTTCCACTGTGTAATATTAAAGGCTGGCTCCCATCTTCCAAAGTCGAAG
GCTTCTCAAACACAAACCAACGATTAAACAAAGGATCATACGGCAAGTCA
TATTCATTATAGCGCAAGTCCCATGATGGTAATTGAATTAAACTCACTTG
TAGTTTATCTGTTTCCTCATTGAATGAATAGACGCTTATGATATCGTCAC
CTGTTTTATCCTCAGCTCCGCAATATACGGTGTAATATTTCCCAGAGCTG
TCGAAGCCACGTATACTTATTTGCTGGGGGCGGTCAAGACCAGCCCAGAT
TTCTTTTGTCTCAACACATTCGGTGAGATGAGGTGGTAAGAACGATTGAC
GTGGGTAAGCCaacatttcttttttgaaaatactctgaacattatttcat
aattattatcac

Run BLAST on NCBI

transcript from alignment at scaffold_77:188672..193958-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072413 ID=TCONS_00072413|Name=TCONS_00072413|organism=Clytia hemisphaerica|type=transcript|length=5287bp|location=Sequence derived from alignment at scaffold_77:188672..193958- (Clytia hemisphaerica)
ACAATATCAGCCACAAAATTAAAATCACCGGTAGAAACAAGCAACATTAA
GACGTAACCATATTCTTTGGTTTTTCCCTGCCAAAAACATTGGATGCATT
GCAAAGCTTTATATGGCTCCAGTTCAATTACACAATCCTCCGTTTCTTGA
AAAGTGGTCGATACAATACTTCCTGGAGGAGCCCCTAAAAGGTGTTTCAA
GCTTCCACTGTGTAATATTAAAGGTTGGCTCCCATCTTCCAAAGTCGAAG
ACTTCTCCAATATTAACCAACGATTAAGTGAAGCGTTATAGGGCCAATCA
TATTCCAAAAAATTAGATTCGTTCCACGTTGGTAATTTAATCAAACTCGT
TTGTAATTTAGCTGTTTCCTCATTGAATGAATAAACAGTGATGACATGAT
CATCTGTGCTGTCCCGTTGCCTGGTATATGAAGTATAATATCTTCCAGAG
CTGTCAAAGCCATGCATGGTTCGGTATACGGGCGGGTCAAGACCAGTCCA
CGTTTCTTTTGTCTCGACACATTCGGTGAGATGAGGTGGTAAGAATGCTT
GCCGTGGGTAAGCCAACATTCCTATTTTGATATTTGAGGATTATTTTAGC
TCGTTTGCATTTTTATTCCTGAAAAAACAACAGATTATACAATGTAAGGT
GTGATCTACACGTTTTTTTCTATAAGAACAAACTGTATAAGAACATGAAG
CTTCGATGGCTAAAGTGTTAAGAACAAGTTAAGAACATTTTTAAGGCTTT
GGCGACTTTTAAACACCCGATTTCTTAGGAAAACGGACAAAAATACTCAG
AAAATGGTGAAAATAAGAAAATAGGAACATAAGAACATGTTAAGAACATT
TTTAGGCTTAAAATCAAAAAAAGTTAAGAACATCGGAACATCCGAAGGCT
TAAGAAATGTTGGATGTTCTCATAAAAAAGAAAACATGTATGGACTGGAG
TGTAATGGGTTATTATTTAGGAACCATGACAATAAAAAACGGTTTTACTT
TTTTGGCCTATTCGACAGAAGAATTAGCCTGTACCAACCTGAATGTCAAC
AGGCGATTTTGTCTCTTCTGTAAAGAAAAGTTTGGTATAGGCAACAGAAG
AATGTATTTTAGAGAATTGAGACGGGTTACGCAAATGAAGACAGACTACA
CGTTTTTTTTTATTAGAACACCTAAAATTTGGCTGAGCCTGGATGTGCTT
ATTTTTTTAGCAATTTTCAGCCTAAAATGTTCTTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTAAGTTTGGTTAAAA
CTGCTTGAAAAGAGGAAAAAATTGTAGTTTCTTGTCATTTTTTTCCAAAC
TGAGGCTGGGCATGTTCTTACGATGTTCTTAATATTTCGACGAATTTCAG
CCTAAATGTTCTTATAAACTGGGTTCTAATAAAGAAAAAAACGTGCAACA
TTTCATTGCCTAAAGACTGACACGACAGGCAAGACTTGCAAGGTAGAAAA
GTGCGTAAAATATCGATGAATTTCAAAATTCCTAGTCATGATTGATACCA
CGAGATAGAAAATGATATTAAGAGATAAACAAATTATGATAAGATATACA
GTCATTGAAAACGGAGAGTCCTTTTTTTATGAATTATAAAATTGTATAAA
ATGGTTATTTTAAAAGTGTATAAATATAATGAAATTGATAAATAATTTTT
TGCAAAATCCGAAATTTAAATATAAGATGCGGAATGATAAGATACTTTCA
TAATAGAATTTGATTGATTCAAAGGACCGCATAAAAAAGATTTTTTCTTT
GCAGTGAACTTTCTAAAATTGAATTGATCCCTTTTTATCTGGCTGGGGAG
ATAAGATAAGCATTAATTTTTATGATGCGTTCTATCAAATAACTTGATAA
ATTCTATTATAAGTTAAAAGGTCAAAAGTGAGCCATAAAAAAATCTTCAA
CCTAAGATAGAGTGGTCTACCAGTTGCGATAAACATCATAAAAGAGATGA
AAATTTTCACAAAGTCCAGAACTGAAAATTGGATTTAAGTCTCAGACACA
CAAATAATGGCACCTGTTTGTGTAATTTACAGACCAGAATAGGTTTGTAG
GCTAAAGTGAATTTTTTTTTCAGTTTTTTTACTCTGCTTAAAGCTTTCAA
CAATACATCAATGAATTAATTTTTGCTGAAGAATTTGATCACTGACACTT
GATCGATGATCGAGGAATGATTTTTTATAAATTCTTTTCCCTAACTTTCT
CTCAGATTTTTGATGGACGCTACACAATTTTCGCAGTGACTACCAGGTGT
GCCAGAAATATATTACCCTCTTGGATTTGATATTGCAGACAGTAGAATAG
AGATTTTTCAAAGATTTTTTTCGGAATCATTCAGAAGAAACTTAAAATTT
GGTGTATTAATTTTTAATTTTACTTCATTGGTTCAAAAGTTATGTTTAAA
AACTTAAAATGTCAATTCTAAAAAATCGAAAAATGAGAGTATCAAATTGA
TTGTAATGAAAAGAGACACAAAACGATATTATGCATCAGGAAATGTATTT
CCATTATGTGAAAGCACTTACCTTATCGGCCCTTTTTACGCCCGCTCTAA
TTTAAAGCCGGTCGCTTTTAAGTCAGCCCTTATTACGCCACAGCCTAATT
TTGAGCTTACGCCAATTAGGGTCGTAAATAACGTCAGAATTTGTTAGAAT
GGCATCCCTGTAAAAACATTCCATCATCTGTGAATCGAGATGAGCTGCAA
CAGTTTTGTGCAACTTTTGCAACTTCAAGTTTAGTGAACTTTCACCTTTC
TCAACGATATGATGCACACACAGGAAAACTTTCGGAAACTCTTGGAAAGA
TGTTGAAAGATTTGTGGGGGTTCAAGTATTCTACATCTTGTTTATGCCCA
AGGGAAAAACAGAAGTAAAAAAAAAACAATTAGAGATAAAGAAAACATAG
AATGTTACAAGGAGCAAGACTTTGTACTTTAAAATGTTTTGGCCTGCAAG
TCCTTTCTCTCATAAATCGATACCACTGTTTTTAGCCTTTTGACAATTTT
TTAAAATTAATATTTTAGGTTTTTGAACATAACTTTTGAACCAATGAAGC
AAAATTAAAAATTAATACACCAAATTTTAAGTTAGGCTTTCTCTGAACGA
TTCCGAAACAATCTTTGAAAAATAATGTTACTGCCTGCAATATCAAGTCA
GCGAGGGTAACTTATTTCTGGCACACTCGGTATATACAAAAAAATTGTCA
GAAACTATCTTTTATTTTAAATTTAGTCTAAATTTTGCGTCATTTCAAGC
GAGTCCAAGATATTTACTGAGACATTTCGGTAGATTGTCCTTCAAGAATT
CGTCATGAAAACTTTTCAAGCAAGCCATTCGTGCCATATGTTTCAAAGAC
ATCTTTAAATGATCAAAAGGAGAATTCACTTTTACGAAGCGAAGATAAGG
GCTTGATAAATACATCAAACTTGCTGTTGGGTCAAATAGCGCTATTTCCG
CCATATGCCAATTAATTGAAAAACCGTAAATTTCTTTTCTACAATCGTAC
CGGATTATCAGTTCTCCTGATTTGAAGTCGTACAAACAAACCGAATGAAA
TGGTTGGGAGCCTGCTTCTGAAGTGACTTGAAGGCCTTCGACAAAAAACT
GATCAAAACATCCAACGACTTTGTGTAAAATAATATCGTTCCGTCCATGA
CACAAATTAATTCTTTTCAATGGGATGACCTCATTTTTATTGTCGACTTG
AAAGACCTTTATGCTTTTTGCCTTTGTGTCAACGTTCTCCAAGAAAATAT
AGAAGATTGAGTTTGACAAATGATAAAAATCATTAAAATTCTGAACACCT
TCCCTTTCAGAGATTGTGACTTCATAATCCATAAGGCGATTTCCCTCAAA
ATCAAAACCATATATCATACCATATTCATAATTATGAAGGTAAATTCTCT
TAGAATTCATATCTAGCGATACACCAGAATTATGGAACGCAAACGTTCCG
AGTTCGAAGTCCATTTCAGTGCAACTGCTCAACACAACACGTTGGAGATG
TGAAAGTCTTTTTTCGCCTATTAAAACGATGTCAGCCACAAAATTGTAAC
CACCAGGAGAAACAAGCACCATTAAGACGTAACCATATTCTTTGGTTTTC
TCCTGCCAAACACTATGGATGTAATCAAAAGCTTTATATGATTCCAGTTC
AATGACAGAATCCTCCGTTTCTTGAAAAGTGGTCGATACAATACTTCCTG
GAAGAGCACCTAAAAGGTGTTTCAAGCTTCCACTGTGTAATATTAAAGGC
TGGCTCCCATCTTCCAAAGTCGAAGGCTTCTCAAACACAAACCAACGATT
AAACAAAGGATCATACGGCAAGTCATATTCATTATAGCGCAAGTCCCATG
ATGGTAATTGAATTAAACTCACTTGTAGTTTATCTGTTTCCTCATTGAAT
GAATAGACGCTTATGATATCGTCACCTGTTTTATCCTCAGCTCCGCAATA
TACGGTGTAATATTTCCCAGAGCTGTCGAAGCCACGTATACTTATTTGCT
GGGGGCGGTCAAGACCAGCCCAGATTTCTTTTGTCTCAACACATTCGGTG
AGATGAGGTGGTAAGAACGATTGACGTGGGTAAGCCAACATTTCTTTTTT
GAAAATACTCTGAACATTATTTCATAATTATTATCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044954	XLOC_044954	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00072413-exon-scaffold_77-1575043694:193768..193958	TCONS_00072413-exon-scaffold_77-1575043694:193768..193958	Clytia hemisphaerica	exon
TCONS_00072413-exon-scaffold_77-1575043694:188672..189092	TCONS_00072413-exon-scaffold_77-1575043694:188672..189092	Clytia hemisphaerica	exon
TCONS_00072413-exon-scaffold_77-1510915933:193768..193958	TCONS_00072413-exon-scaffold_77-1510915933:193768..193958	Clytia hemisphaerica	exon
TCONS_00072413-exon-scaffold_77-1510915933:188672..189092	TCONS_00072413-exon-scaffold_77-1510915933:188672..189092	Clytia hemisphaerica	exon
TCONS_00072413-exon-scaffold_77-1491911889:193768..193958	TCONS_00072413-exon-scaffold_77-1491911889:193768..193958	Clytia hemisphaerica	exon
TCONS_00072413-exon-scaffold_77-1491911889:188672..189092	TCONS_00072413-exon-scaffold_77-1491911889:188672..189092	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_77	supercontig	scaffold_77:188672..193958 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.610133	2.46161e-09	0.119937	0	0.403251	1.46678	0.00257804	0	0	1.31768	0.741143	1.67646	1.06567	0.747124	0.334427	1.18879	0	0.631141	0	0	0	0	0.0173278	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00072413 vs. Swiss-Prot (Human)

BLAST of TCONS_00072413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00072413 (transcript) - C. hemisphaerica