TCONS_00072282 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072282
Unique Name	TCONS_00072282
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	5372

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_73:11611..24937-

transcript sequence

>TCONS_00072282 ID=TCONS_00072282|Name=TCONS_00072282|organism=Clytia hemisphaerica|type=transcript|length=5372bp
gatAGATTAAAATACTAACAAATGATGACTGATACTCCCAATCATGCtga
agaagaagagaaaaatataatatcaaaTAATAACCATTGTAATCCTGAAC
CCAATTTTTGTGCTACTAATTTAACCGTCTGTGTCTCTGCTGATGAAAGT
ATCAATACTAAACCACAACAAACTGATGCTAAGTTATCAAGATCTTCAGA
ATCAAATTATTCCTTAATATGGAAAGTTGATGACATTGAAAAAGATGAGG
AAAATCCTTATGAACTTATCCAAAGAGGATCTTCTATTAGTAAAAATGAT
CGAGTTAGTATTTCTAGAATGCAAAGAAGAAGGCCCAAAGGCAACAAAGT
TAAAAGTATGTATGTTGTGGGAGACAGCATGATAGGGTACAAAGATGGTG
TCCCAGGCTCCTTTAGTCCTGTGTCAGTGTCAAATCGACGGGAAGTGAAA
AGTGTTCCTGTTTTTCCTGAAGAGATAACGCTTTTACCTGAACGCCCTCC
AAGAAAAAATCGTTTAAAACTGAACTCAAATCAAGCTAGAATATATGATC
AAGTATTTGAAAGTACAGATGAGGAGATGAGAAAGTCAAGTACCAGCAGT
AACGAAAGCAAAGGAGAGGATGGTGACAACGTTGGTGGTCCACAACATGT
TATTATTTCATCTGGTAGTGTCAAAGTGGAAACTGGTGTTCGAATATTTG
ATCCTTCAGTAAAAACACGACGTCAATCGAGTACTGTTGTGCTTCCTGTT
TCATTGAATGATGAGCTGTCAGAATCAGATGAAGAATCGTGGGGTTCCGA
TTTCGAAGAATCCTTCAGAGAGGAAGAAGAAGTTTATGAAGTGCTTGGAA
AACCAAAGGAGGGCGTTGGATCGattgacAATAATTATGAGCGCATTGAA
AGTTTTGGTAGAGAGCCCTCAACACGACCGAAACCTCCACTACCACCAAG
ACAATGTCGTATCTTTCAAAGCATTGAAAACCTAGACCTTGAAAAAGACA
TGTATGTGGAGGTGAACATTGACGATGAAATGATGTTTCCTGCTGTCCTC
CCTCCTCTTGAGGATGACGCTGATGAATTTCAGTTAAAAAGGTATCAAAT
TGTGAAATGCatcttggaaaatgaaaaagtgtACGTCACATCCCTAAACA
GACTCATCAATGAGTACGAGATGCCGTTGCGGAAGAGAAATATAATTTCA
GACGACCGAATTAAAGTGATCTTTCGGCACGTGCATGAGATCATTCAATG
TCATCAGTTGTTCAGCATGGCTCTCACTGATCGCACCAAAGAATGGTCTA
CCAATGACGTCATTGGTGACGTCATCTATGCTTCTTTTTCGAAGTCTATG
GCCTTGAAAGCCTACACGTCATTCGTTCACAATTTCTCGTATGCAATGGA
AAGTATCAAAGAAACTTGCAAACTGGTCCCTGCGTTCCTTTCCTTCTTAA
AGACTAGATCTTCCAACATTTCGACCTACTACCAAGTATTTAAAGAATCA
GCCAAGAATCACTTGAATCGAAATAGTACGAAACAGTCTCTATACGACTT
GATGAGACAACCTTTGGAACGGATTCCTCAACTGGTCACCCTGACACAGG
AGTTGACCAAGATAACACCCCTGTTACACCCTGATCATTTCCCACTACAA
ATGGCCCTAACACACTTGGAGTGTTTTTCAGAGACACTTGCTGAAAAGAA
ACGCGACTCGATGTATAAACACAAAGTCAGACAGTTGGATAATTATTGCA
TTGGTCTAGAAAAGcCACTTTCATCGAAGAATAGATACTACGTTCGACAT
GATGACATGATTTTATGTATTGTGGACGAAGGGAAGATCGTCAAAACCAA
ACTAAgaagattgtttattctcaaCGATTTGCTCATCTGCGCTGGAATAT
TGACAAAGCCAAAGAAATTGAAATCATTGACGTCAAAGAAGTTTCAGATC
AAATGGTGTGTTCCCATCAACGATGTACAAATATTAGACGTTGGTTCTGG
AATCTCCTTCCAATCGCACAAACAAACACTCACTACCAAATACTCACATA
TGAGCAGTCCAAGACCAGGAGTTGGTGACGCGCCTAAAGTGTTAGAGGAT
TTGCAACATGACATCGAGGTCATCGTTCATCGACATAAAGAAGGTTACGC
AATGGTACAACGATGTTAAATCTTTCTACGAACGTGAACGAGAGCTTGTC
AATATGAACTGGATCGAAATAGCTATCCCCAGCAAGGATCCAAAGAATGA
GAACATTCGCTATCTGTTCAATGTACATTCAGCAGACAAACGAATGGAAT
GGCTGGCAGAATTCGAGAATGTTAAATTGCGTTTGACGCATAACAACAAC
CCTGGCTGGTATCTACAAGAAGACAATATTTATGACGGTGAAGCGGCTGT
GTTGCGACGAACTCTGCCTCTTCTTTCCAACCTCATGCCCATGTTCATTA
TCGAAAACAAACATaagGTGACATGTAGCTTAGAAGTTTCAATGACGACC
ACAATGAAGCCCATCCTTTGGTTATTCTCTGGCAGCGATCACTTGGGTAT
GATCACGCTCATGGAAATGGACATGACAAGCGTCCCCAAAGTCATGGAAA
GTTTTGTAGCTTGTGAAACGAGGATTTGTTGTGCGGAAAGGGTACCGGAA
GACGGATTCTACTCTCTGGTACCTTACATTCAAAATGTTTCCGTATGGGT
CGGTACAATGGCTGGAAGAATTTTGTTGTTTGATCCGAACATCGAAGAAA
GATATCCGTCACTGCATACCACACTCAAAGATGCCGTCATCAGTTTGAAG
TACtgtcggaatcgtatgtttgcAGGGTTGGCGAATGGAACTTTGGCTTG
CTTCAGGAGAAAAGTCGAGGGTAATTGGGATCTGTCGAACCCGACCATCG
TGTGTTTGGATACGAATGGTGTGTTGAGTATGACAGAAGTTGTTGGTCAT
TTGTGGTGTGGATGTGCTTCTAATGTGTATGTCGTCAACACCGTCACTCT
TGCTATCGAGAGGAAATTGACAGTGGAGGGAGGTGGAGTGAAACATCTGG
TCGCTTATGGAATTGGCGTGTGGGTGTCATCGTGGCGTTCGTCTAAACTA
CAATTGTACCACGCTGAAACGTTGGATCAACTACAAACGCTGAATGTCTC
CACTGCTGTCTCTCGAATGAAAAATGACATCGACATCAATGTTGAAAAGA
TCGTCCCGGAAAAACTTTACGTCACCTCCATCATGGCACGGAGCGGTCTG
TTATGGGTCGGAACCGATCAAGGTCTCATCTTAACATACCCTCTCCCTAA
ACTTGGTGGCATTCCGAAAGTCAATGGATCTGCCTGTATTTCGTTCCATG
GCCACGATGGCCCTGTGCGGCACTTGTATGCTTTTAAAGTGCAGAAACAA
AATACTCAAAATAGCACAAAAATCGGGAAGATTGaaaaagaagaagaact
cCACGGTGAGGAAGAGGGAAGAAGAAGCTCTCGTTTTTATCGTAGTGCTT
TCGAAGAAGTGGATGAACTTGGCTTGTCTATCGAGGCGTTGGATCAAGTG
GCGGATGATGAGGAGGGAGAGGGTGGAGAGGGTGGACCTCTTCCTGTCTA
CTTCGAAGTAGAGGCGGATAGAGGGGTGAACAAAAGTGAGGAGAATGGAC
TGTTCGTCAATGAAGCACAACAGCACCAACCAACTACTGACTATGCAGAA
TATGATAACGAGAGTAGTTATTATGATAAAGAATCCGTTGACCAACCTAT
CAACGGAAATGATGATCAACCTGATCAAAGTTCCACAAGTGGGATTCCTG
ACGAGTCGACAGAAATTGGACTAGAAGAGACGGAGACTCCTGAAGTTGAT
TTTCTAGAAGAAGCGAAAGAGAAGAAAGCAGAACCAATCTCCAAAGAAGT
CTCGAACGAGGAAAGAGAACAAATTGTCGTCAAAACCGAGAANTTCTAGA
AGAAGCGAAAGAGAAGAAAGCAGAACCAATCTCCAAAGAAGTCTCGAACG
AGGAAAGAGAACAAATTGTCGTCAAAACCGAGAAGTCTGACCATAATACT
GAAAACATATTCCCAGAAGAAGCTCCGGCGGTTGTGGAAATTCATGATGC
AATAGTTGGATCATCAGAACCTTTAGACGCCAGTACCCCTGCTAAAGATA
ACAAAACCACTACTGTCATCCCTGCTCAAAGTGAGCTAATCGTCGACACA
ACTGGAGATGAAGGGGGAGAAAAAACGTATGAATCTCCTGTCCCTCCAGT
ACCTCAAAAAGGCCTTTCTAAAAATGATACTTTAGATTCGAATGTTTCAT
CGACCGACTTGAACGATACTTGGTCTGTGGTATGCGACCATTACAAAACT
CTCCCATTGCCAAACTCACCCTGGCATAGCTATCAGGAAGCATCTGCGGG
ACAAGATACACCATCTTTGCCGTTAGATCCGAAGAATTACACGCCGTTGA
TTGCGGAGAGCGACGGTCGAGAGAACACGTTCGCATCTTCCATTACTTCT
GCTGTTAATTTTAAAGACTTTGAAAGGGAATTGTCTTTTGGACCATCGCT
GGCGGATAAAGTTGACGGCGATGGTAATTATGCTTCTCTGGTTGCTCATT
CGAAGAGAGAGGTGGCTGCTAGGAAAGACGCTCTTTTGAAACCGTGTTAC
GTTGTGAGCATTGGTGTTGGACACATCGACTTTCGCAGACCGAGTAAGCG
TGGTAGTAAAACTGCTGAGTTCTTTCGCGCACTGAGTACAGGTGGTGCAC
AACCAGAATCAATGCTTATTGCATGGAAAATAAGTTAATTAATCTTAGTt
acttgaatttttttcttctgttttttttaattattctaattttctagtga
atttttttctctggtaatatttgtaaattattatatagaatagaattttt
aattttcacttaaattttatcgaaataATTTTCTATGAGTTTTCCTTGTG
ATCGATATGGAAATGTTTGCTGGTCTTCTTTGTGCACAAACCTGATTTCA
CAGTTCAATTAGTACAATGCAAGTCAGGCCCAATAAATTTAGATCATTCA
GCCCGATTAATTCGCATGTCAAGGATGATGCAATTGTTGATGAATGTCAT
GTATTCGACAAATTTTCCCCTGATTGTTAGCGTTTTAGCTGactgtttct
ttttttcatttttctgttaaTTACTTATTTTTTACTCACCCATATTGCAC
CTTAATTGTTTTATGAATAATTCATAtataatttatatatttttgataca
ACAAACAAATTTTATTATAGGCACTTGAGATaattatgaaataattttat
tttatacacCATACTTAGATAATCATAGCATAGATAgataaatataatat
atataatcGAAAATGATACAAA

Run BLAST on NCBI

transcript from alignment at scaffold_73:11611..24937-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072282 ID=TCONS_00072282|Name=TCONS_00072282|organism=Clytia hemisphaerica|type=transcript|length=13327bp|location=Sequence derived from alignment at scaffold_73:11611..24937- (Clytia hemisphaerica)
GATAGATTAAAATACTAACAAATGATGACTGATACTCCCAATCATGCTGA
AGAAGAAGAGAAAAATATAATATCAAATAATAACCATTGTAATCCTGAAC
CCAATTTTTGTGCTACTAATTTAACCGTCTGTGTCTCTGCTGATGAAAGT
ATCAATACTAAACCACAACAAACTGATGCTAAGTTATCAAGATCTTCAGA
ATCAAATTATTCCTTAATATGGAAAGTTGATGACATTGAAAAAGATGAGG
AAAATCCTTATGAACTTATCCAAAGAGGATCTTCTATTAGTAAAAATGAT
CGAGTTAGTATTTCTAGAATGCAAAGAAGAAGGCCCAAAGGCAACAAAGT
TAAAAGTATGTATGTTGTGGGAGACAGCATGATAGGGTACAAAGATGGTG
TCCCAGGCTCCTTTAGTCCTGTGTCAGTGTCAAATCGACGGGAAGTGAAA
AGTGTTCCTGTTTTTCCTGAAGAGATAACGCTTTTACCTGAACGCCCTCC
AAGAAAAAATCGTTTAAAACTGAACTCAAATCAAGCTAGAATATGTAAGT
AATTATAATGATAGATCATTTGGTCACATCTACACTCTTGCACAAAATGA
GACACTGCTTGGATCAATAAGCTATTGAAATATAATCTGTAATATAACAA
TGTTAAAAAGCCAAAAAAGGAGTATGGATACTAACCATTTTTCTTTTCTT
TCTTTTCTTTTACAATTGTGCTCCTCTAAGACTTTAAAGCTCTGTAAGGT
TTTGAACTAAAGAAATGCCTTGTAATTTCATATAAAAATGTAGATGATCA
AGTATTTGAAAGTACAGATGAGGAGATGAGAAAGTCAAGTACCAGCAGTA
ACGAAAGCAAAGGAGAGGATGGTGACAACGTTGGTGGTCCACAACATGTT
ATTATTTCATCTGGTAGTGTCAAAGTGGAAACTGGTGTTCGAATATTTGA
TCCTTCAGGTTAGTTTTTGCCGAAGAAAGAGTAAGTTTCCCTCTTTTAAT
TAGATTTAAAATGTTGGCTAAAATGTTCTATATTGGCAAGAGACTATTTC
TTAGGACCCTTGACAAAAATTTCAAGGCCAGAATTTTTTTGCTCAATTGA
AAGAAAAAAGTATTCAGAGACTTTTTGAGGTTATGCCAAAAAAAAAAATT
GAAAATTTCAAATATTAATTTGTAGTAAAAACACGACGTCAATCGAGTAC
TGTTGTGCTTCCTGTTTCATTGAATGATGAGCTGTCAGAATCAGATGAAG
AATCGTGGGGTTCCGATTTCGAAGAATCCTTCAGAGAGGAAGAAGAAGTT
TATGAAGTGCTTGGAAAACCAAAGGAGGGCGTTGGATCGGTGAGATAATG
TTTCTAACTTAACAAGTTTTTTCTGTAACAAGAAGTTTACAATCGTTCCT
ATATGAAGTGTAACTAAAGGTTTTTTTGTGCAATATATAAATCATTTATA
GGTTCCTCACCAGAGGGTGTGAATTTTGTCAACACATAGCTTTAATCCTT
TTAAAGAAGAATGATCCAAAGTTTTTGTGATAAAACGATTTTAAAATTCG
CATCAATTGACAATCCAAAAAACTATGAATAAAATTTGGATAAACTTAAA
TTATTATTTTTCAAAGATTGACAATAATTATGAGCGCATTGAAAGTTTTG
GTAGAGAGCCCTCAACACGACCGAAACCTCCACTACCACCAAGACAATGT
CGTATCTTTCAAAGCATTGAAAACCTAGGTAAGTCATTCATGCAGAAAGT
ATGATTTTTGTTTTTAAACAGAAATGGAAGAGAGAGGTGAAAGATTTGAA
ATGAATAAAAGCAATAAATGACAATGGGCTCCTCTAGAAAATGTTCCTAC
ATGGGGATGGAGGATATATTGTCCAGGGGTAGTGAAAAACCTACAAAATT
TGCTCTGTTTGAGGGTAGTTTTGAATGTTCGGGGGGTCAACTGATGCTTG
TCCAGAGGGTTCTGCTTTCCAGGGATCTATAATCAGAATGTTTGTGTGCT
AAATTTCCAAAAACTATTATATTCTCTACCCCCATATCCAATTTTTTTTC
CGGAAGAGCCCGATATACCTGAATCTGAATGACAAAAGTTTCGAGTTAAT
AATCTTTTCAACTTTGTTATATTTCAGACCTTGAAAAAGACATGTATGTG
GAGGTGAACATTGACGATGAAATGATGTTTCCTGCTGTCCTCCCTCCTCT
TGAGGATGACGCTGATGAATTTCAGGTATTGCAGCATTCTTCTTTAATGT
TTTAGTTTGAAAAACCTCGTTCATTTGAAACGTCCATAGTTGAGGACTTT
TTGATTTATTAATTTCTGCCCTGTTGGCTTCATCCTTTGATTTGGTGACT
TCAGTTTTTCAAGTAACTACTTTTCTCAAATGTATTGGTACTTCATTACC
GATTCTATCGTATAAATGGTTAAGTTGATTTGGACGCTTCTTTTAACAGC
AGTTGTTTTGGACAATCTTTAATTCGTCAATGATTTTTTCCCTTCAGTTA
AAAAGGTATCAAATTGTGAAATGCATCTTGGAAAATGAAAAAGTGTACGT
CACATCCCTAAACAGACTCATCAATGTAAGTTACCTCTAGATAGGCGAAA
GTTCTTTCTGTCTGAGCAGAGTACAAATAGAGAAATCCCGTCTGAATTAT
AGGAACTTAAAGATCATACATACCCCTCGGGTACCTAATAAGCGTCCCNC
AGAGAAACCCCGTCTGAATTATAGGAACTTTAGAGATCATGCACTCTCGG
GTACCTAATAAGCGTCCCCCCTGTTAATGAATTTTTCGAAAATTTACTAC
TCAAGACATTCTATTTCCAAAGCCCCTCCATCCGCTGTTTATCAACTTTG
CCCTAATTCTGCTGTATTAGCCTCCTTTTCAAAAACTTTACTCCCAGGAC
ATTTTTTATTCCAACCTCCCTCCTTATTAAAGTAAGAGAATTTTTCCACC
CACCCCGTTTATTAGGTACCCGATAGTAAGCTTATTTGGTGTGCATGGAG
GTGTGTTACTATGATTCCGTGATATATATTTTTATTCACTTTACTGTGTT
TTTGATGACTGGCTTTCAACTCAACTTTTGTCATCATTTATCATCAACCT
TTTTAAGGAGTACGAGATGCCGTTGCGGAAGAGAAATATAATTTCAGACG
ACCGAATTAAAGTGATCTTTCGGCACGTGCATGAGATCATTCAATGTCAT
CAGTTGTTCAGCATGGCTCTCACTGATCGCACCAAAGAATGGTCTACCAA
TGACGTCATTGGTGACGTCATCTATGCTTCTGTAAGTTAATAACTGTAGA
CCTGTTCTACAGGGGTTTTCAAATTGAAATACTGGCTAGCTTATATAACC
AATATTTTTGTTCGAATTTTCTATTTTGCTACTCTTCTTATTCGAAATCA
TTATTACGCCATTTGACTACAACAAAGAAAGTCCTTTGATTGAGTGGTCA
GGTGTGCTTTCATTCCATAGCAAATTCAAAATATTTTGATTTGTCTTTGT
GTTTTAGTTTTCGAAGTCTATGGCCTTGAAAGCCTACACGTCATTCGTTC
ACAATTTCTCGTATGCAATGGAAAGTATCAAAGAAACTTGCAAACTGGTC
CCTGCGTTCCTTTCCTTCTTAAAGGTATGTATGACAATATGTTTATTGAA
CGTCGATAACACCTTACTAAACATGATCTTTGCAAAAGCATCCAAAGATG
TTCCTAGTGGCATGTTATATTAGCATGATTAATATTTGAACAAACCTCAC
CTGCACAGAATGTGTGATCACTCTACCAAGTATGTATGTTATTGATGACT
ACCTTCTGTTCTTTCAGACTAGATCTTCCAACATTTCGACCTACTACCAA
GTATTTAAAGAATCAGCCAAGGTTTTTAATTCACTAACTCGTTTGCAATA
CAAATAATGATTTTACTAATGTTGATTAATTGTTATCAAAATGATTTTTA
TCGTTTTTCTCGGCCGTAAGAGAGAACACTAATTCTATCATTTCAACTTC
TATTTTTGCATGCTCTTAAATTTTATCTCGCACTGCATGCTAAATGACTT
TTTTCTCTCAAAACTCTTCTTGATGTCAGTTATGTGGATAACTTTTCTCC
CTTTCAGAATCACTTGAATCGAAATAGTACGAAACAGTCTCTATACGACT
TGATGAGACAACCTTTGGAACGGATTCCTCAACTGGTCACCCTGACACAG
GAGTTGACCAAGATAACACCCCTGTTACACCCTGATCATTTCCCACTACA
AATGGCCCTAACACACTTGGAGTGTTTTTCAGAGACACTTGCTGAAAAGA
AACGCGACTCGATGTATAAACACAAAGTCAGACAGTTGGATAATTATTGC
ATTGGTCTAGAAAAGGTGATTGATCGATTCTTCACCAATAGTTTTTCAGT
AGTTCAGAGGTGATATGTTAAATTACCAGTTACATATAATGCTGTTCAAG
TTAAACGAAGAGATATTAAGATATTTTGTTTTTGTTTATTTGATAGAATT
GACTAAAATTTAAAGGAAAAATGTTGAGTAAATCTTAAGTAAAATACTAT
TCTTTTTCATTTAGCCACTTTCATCGAAGAATAGATACTACGTTCGACAT
GATGACATGATTTTATGTGTAAGTTTCTCACTATATAGTGACCAAGCTGT
TTTTCTCTGGAAAATTTCTGGGCATTGCTAGTTCGCTATACGTCATGTCA
GCAATAATGTAATGAAAAAGTTTACTAGAGAAGTTTTTCCACTTTAGATT
GTGGACGAAGGGAAGATCGTCAAAACCAAACTAAGAAGATTGTTTATTCT
CAACGATTTGCTCATCTGCGCTGGAATATTGACAAAGTAAGTGTGAAAGC
CTGAAAGATTATTCCTTTAAAATCCAAAATATTTGATACTGTCGTAGTCG
GATGTTATCACCTGTAGTTGTTGCTATTGACAACGTCTTCTGTGCTTAAA
TGTATGGAACAAAGTCATGCTATATGTATCTGGACTGGTGAAATTCGTAT
GTCGTTTTCTTTCTTAACTTTTACCAACGTCCTGCTTGCTGATTTTCATC
CTGAGATATTGAAAGTTGGGTTCTGGATACTAATTTATCTTATTAAAATT
CTAAACTTTTGCAGGCCAAAGAAATTGAAATCATTGACGTCAAAGAAGTT
TCAGATCAAATGGTGTGTTCCCATCAACGATGTACAAATATTAGACGTTG
GTTCTGGAATCTCCTTCCAATCGCACAAACAAACACTCACTACCAAATAC
TCACATAGTACGCGTTACTTTGTCTTATACCATCAGTAGAAACATTATGG
TTTACGACGAATTTACATTTGAATAACTTGTTGCTTTCTGTGCCTTCTAC
ATTGTTCTCATTACGTCTCATACGTCTTTTGAAATATTATTTTTATATTT
TAATATTTTTATTACCCATGTATCAATAGGTTTCGTTACTTGGATTAAAT
GTAAACCACAGGCATCATAAATTCAGGCTGTTACAATTCTTTCGACACTC
TTCAAAATATTGTTTTTATGAAAATAGCATGACTAACACGTGCATTTTTT
AATCCTGCAGTGAGCAGTCCAAGACCAGGAGTTGGTGACGCGCCTAAAGT
GTTAGAGGATTTGCAACATGACATCGAGGTCATCGGTGAGATTGTTGGCA
AAGTTTCCAGTCTAAGAAGAANGGTACGCGTTACTTTGTCTTATACCATC
AGTAGAAACATTATGGTTTACGACGAATTTACGTTTGAATAACTTGTTGC
TTTCTGTGCCTTCTACATTGTTCTCATTACGTCTCATACGTCTTTTGAAA
TATTATTTTTATATTTTAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACTTTATTTACATCACCAAATGATTTGAATGGCTAC
TTTTATAGTGAAGATGTATGAATTTTTCTTTCAGTTCAAAGAAATCAATT
TTTCTTAAAAGAAACATATTCTTCTCCCTTTAGTTCATCGACATAAAGAA
GGTTACGCAATGGTACAACGATGTTAAATCTTTCTACGAACGTGAACGAG
AGCTTGTCAATATGAACTGGATCGAAATAGCTATCCCCAGCAAGGATCCA
AAGTATGTGGTATTACTTTTCAGACCTCTTATACATTCCCGAGGGTTGTT
TCTTATGATCGTTCGTCGTTAGCCATCAAGCAACACACAAGTGGTTTCGA
CTTTCCCAACATTCTCTGTCTGGTCATTCGAGTCTTGAAACCAAGCCTCG
TGTTCAACTGTTGGTCTGAATTCTCCCCCCCCCCTCTTGGTAGACTGGAG
GCCATTAAAGGCTTCTTATATAAGACTGGATAACGCTTATCCAAAAGAAA
CCTTTAGCTAATGGTACACGCTCGGTTGTTTTGACTTTTCACAAAAATTC
TTCTCTCAGGAATGAGAACATTCGCTATCTGTTCAATGTACATTCAGCAG
ACAAACGAATGGAATGGCTGGCAGAATTCGAGAATGTTAAATTGCGTTTG
ACGCATAACAACAACCCTGGCTGGTATCTACAAGAAGACAATATTTATGA
CGGTGAAGCGGCTGTGTTGCGACGAACTCTGCCTCTTCTTTCCAACCTCA
TGCCCATGTTCATTATCGAAAACAAACATAAGGTTTGTTTTGTTTTCTAC
TTTCATTACATGTTTTTTCTGTCGTATAGTGTACATTCTATCCCCGAGAG
CACTCTATTTATTAAATCAATGCATGTAAGATTTTAACTTTTCTATATAA
CTCGTTACATATTTTTATAAGCAACTGAGTTGCTAATTGCAACTTTGCTT
TAACAACCTAGCCCTGAAACTGAGCATGAACTGGGAAAGCAACCAAAAAA
ACCTTGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGCAACTGAGTTGCTAATTGCAACTTTGCTTTAACAACCT
AGCCCTGAAACTGAGCATGAACTGGGAAAGCAACCAAAAAAACCTTGAAA
AAGGCATATCCNTAAGATTTTAACTTTTCTATATAACTCGTTACATATTT
TTATAAGCAACTGAGTTGCTAATTGCAACTTTGCTTTAACAACCTAGCCC
TGAAACTGAGCATGAACTGGGAAAGCAACCAAAAAAACCTTGAAAAAAGG
CATATCTGGTGGTATTATTTGGCATTAAAATGTGTACCGATGGTATTTAN
TGAAAAAAGGCATATCCGGTGGTATTATTTGGCATTAAAATGTGTACCGA
TGGTATTTATTTGAATACCAAATTTGAGGTATTCTGGATATAAAACGAGA
TAAAAAGTTGGGGTTGCTTAAAAAAAAAACAGGTGTACTGCTATTGTATC
ATGCATGGTCTTGCTACTCGGTCTATAAAATCTCATGGCCCAGAATGACC
CTTATCTCTTGTTCATTGTTAGGTGACATGTAGCTTAGAAGTTTCAATGA
CGACCACAATGAAGCCCATCCTTTGGTTATTCTCTGGCAGCGATCACTTG
GGTATGATCACGCTCATGGAAATGGACATGACAAGCGTCCCCAAAGTCAT
GGAAAGTTTTGTAGCTTGTGAAACGAGGATTTGTTGTGCGGAAAGGGTAC
CGGAAGACGGATTCTACTCTCTGGTACCTTACATTCAAAATGTTTCCGTA
TGGGTCGGTACAATGGCTGGAAGGTAATGGTTCATGCAAATTACTGATTA
GTGGTAATTTTAAAAATAATAACATCGACCTGATTTAAAATAAAGATTTT
ACCGTCAAATCTTTTTTTTGATTTTCTGAAATTTTATTTTCCACTTTTAT
TTTTCTTCTACTTCGTAGAATTTTGTTGTTTGATCCGAACATCGAAGAGA
GATATCCGTCACTGCATACCACACTCAAAGATGCCGTCATCAGTTTGAAG
TGAGTGGTGAAAATTGCTTTTTTTTGTTATCCAATATTCCGAGTTTAGAA
TTATTTTGGGGTAGGTAGTAATGACGCTCAAAGTTCCGATTTTTTTTGTG
TACCTAGGTACTGTCGGAATCGTATGTTTGCAGGGTTGGCGAATGGAACT
TTGGCTTGCNAAGTTTCAATGACGACCACAATGAAGCCCATCCTTTGGTT
ATTCTCTGGCAGCGATCACTTGGGTATGATCACGCTCATGGAAATGGACA
TGGCAAGCGTCCCCAAAGTTATGGAAAGTTTTGTAGCTTGTGAAACGAGG
ATTTGTTGCGCGGAAAGGGTACCGGAAGACGGATTCTACTCTCTGGTACC
TTACATTCAAAATGTTTCCGTATGGGTCGGTACAATGGCTGGAAGGTAAT
TATTCATAGCTTCAATGGAAATGTTGTCTCGCGAATGACTGATTAGCTCT
AATTTGTATATGTAATCACATGATAACGAGTGCAATTTTCGATTTGTACG
AGTTATTATGTGATTACGAGCTAATCGCACAACTTGTTTTACTACTTTTT
TCCCGTTAGAAAAGTAAATTACACTGAAAGTTTTGTATTTTTTTCTTCTA
TCTACGTTTTTCTTTTATTAAAGTTTATAGATTTTCTTTCTCACAAAATG
AAATTCGAATGCAATTAAAACGTTCGATGAAAAAAATGTAAGAAAAACAT
TTACATCAATTTTGTAAACATTGGCGCTGCATCGAGAGTGTAATTAACGA
TTAATTGCTCTCTACAGGATGTAATTAACGATTAATTGATATCTTTGAAG
GCGCGCCAAATAAGAAAGAATAACTCATCGCGCGAATACAAAAATAATCA
CAACGACCTGATTTGAAATGAAGATTCTACCGTCAATTTTGTGTTTTTCT
GAAATTTTATTTTCAACTTTTTACTTCCTAGAATTTTGTTGTTTGATCCC
AACATCGAAGAAAGATATCCGTCACTGCATACCACACTCAAAGATGCCGT
CATCAGTTTGAAGTGAGTGCTGAAAATTGTTTTTTTTTTGTTATCCAATA
ACCCATTCGATTCAGAGTTTAGAATTATTTTGTGGTAGGTAGTAATGACG
CCTAAAGTTCCGATTTTTTGTTTACCTAGGTACTGTCGGAATCGTATGTT
TGCAGGCTTGGCGAATGGAACTTTGGCTTGTNGATTTTTTTTGTGTACCT
AGGTACTGTCGGAATCGTATGTTTGCAGGGTTGGCGAATGGAACTTTGGC
TTGCTTCAGGAGAAAAGTCGGTATGTTTCTCCATTTACTTTTTTTCATAA
GTTCTCTTTGATGGCACTAGATCCGCAACTTTACAAATTATGGAATTTAT
GTATGTGTGTTTTTCTGCGACTGAGATGACGATAAGGTTCTAATTTGTAT
ACATCCTGGCTAACTGACTGAGGACGACAGTAAATCAGCACTTTTTACCG
TCCTTGATTTTTCGGGTCAAAACTGCGGATTATTCCAAATCGCTCTAGTC
GCTTTACCGTCCTTGAAGGTGCAAATACATAAACTCGCTAATATTTCTCA
ACTCAGAGGGTAATTGGGATCTGTCGAACCCGACCATCGTGTGTTTGGAT
ACGAATGGTGTGTTGAGTATGACAGAAGTTGTTGGTCATTTGTGGTGTGG
ATGTGCTTCTAATGTGTATGTCGTCAACACCGTCACTCTTGCTATCGAGG
TAAACGTCTTTTATCCTGATAAGTTGTGTTAAGCGATCCTCGAGAGAATC
CGAGTATTGAATCATTAAAAAAATATTACATTTTCTAAAATCATGATAAA
TAATCAGGCTGGTGATCTTCTACAGCGAAACACGTTTTATTTACTGAACT
ATAGCGAGACTATCTACTCTTTTACACATGCTTGTCACTCGTTACTCGAA
CATTCCAGGAAAAATTTTATTCTATCCTTTAAAAGTAATAAACCTGTCTA
TTTGCTTTGCAGAGGAAATTGACAGTGGAGGGAGGTGGAGTGAAACATCT
GGTCGCTTATGGAATTGGCGTGTGGGTGTCATCGTGGCGTTCGTCTAAAC
TACAATTGTACCACGCTGAAACGTTGGATCAACTACAAACGCTGAATGTC
TCCACTGCTGTCTCTCGAATGAAAAATGGTATTGAAATTCTTATTCATGT
TCTCTCGATAAGTTTAAAGTTCATCATTTTTGGGCCCTTTCTTACTATTA
AAGCAAGAATTCGTAGCTCCCTCTGACTGAGCCTACAATTCCCAGGAGTA
TGGTATGACTCTGATATTTCAGCGTTCATATCTTGTCATTAACGTTTCTC
ATATCTTTATCTGAGTTGATTTTCGTGATTCCCTGCAAGGAATAGGTTGC
TTAGAATTGAATTTCCCTTCCAACGATATATAGTCTTGTAGGGTTTTCCA
AAGGCAAAACTTGGAAAAAGTGGTGACGTAAATAGAAACAACATTTTTAA
GAGTGTCTCTCTCAATTCTTTCCCTCTGCCCTATGATGAGTAATTGTGTA
AAATTTCAAAGCCAATTTGAATTATGTATCTACTACACTGTCTCATTGAA
CTATCGTGCAACTTTATTTTAATCAATTCCATTCACGATTTATTCTCCTT
TTTTTAGACATCGACATCAATGTTGAAAAGATCGTCCCGGAAAAACTTTA
CGTCACCTCCATCATGGCACGGAGCGGTCTGTTATGGGTCGGAACCGATC
AAGGTCTCATCTTAACATACCCTCTCCCTAAACTTGGTGGCATTCCGAAA
GTCAATGGATCTGCCTGTATTTCGTTCCATGGCCACGATGGCCCTGTGCG
GCACTTGTATGCTTTTAAAGTGCAGAAACAAAATACTCAAAATAGCACAA
AAATCGGGAAGATTGGTAAATTTTCTATTCTCTGTTTTCACAATGTTATC
CTTTTGGGGCTCAGAATGCCTAAAAATTAAGAAACATCTAAGAAATATGC
TGAGGCTGAGAATGAGAAAATGACATTTTCTAATTCGGTTTTTTTATTAA
GAACCTTCCAATCAAAGAAAAGTTCGAGAAAAATACTTACATAACAGTTA
GAAACACTTGAGAAAGTCAGAAAATCAATATAGAAGATATGAAAGTACCG
TAGATTAGACTATTGTATTATCACCATGCGTCCTTTAAGCACGTCAAAGT
TTAGAAACATGTAAGAAACAGGCTCAAAAGGCCGATTTCTTAAGAAACAT
TGAGGCTGCGTGGTAAAACTAGTTTCTTAAAAAAAACGTGTACTCAATAA
TTCTTTAGAGACGAGCTTTTCATTTTTATTTTTCCATAGAAAAAGAAGAA
GAACTCCACGGTGAGGAAGAGGGAAGAAGAAGCTCTCGTTTTTATCGTAG
TGCTTTCGAAGAAGTGGATGAACTTGGCTTGTCTATCGAGGCGTTGGATC
AAGTGGCGGATGATGAGGAGGGAGAGGGTGGAGAGGGTGGACCTCTTCCT
GTCTACTTCGAAGTAGAGGCGGATAGAGGGGTGAACAAAAGTGAGGAGAA
TGGACTGTTCGTCAATGAAGCACAACAGCACCAACCAACTACTGACTATG
CAGAATATGATAACGAGAGTAGTTATTATGATAAAGAATCCGTTGACCAA
CCTATCAACGGAAATGATGATCAACCTGATCAAAGTTCCACAAGTGGGAT
TCCTGACGAGTCGACAGAAATTGGACTAGAAGAGACGGAGACTCCTGAAG
TTGATTTTCTAGAAGAAGCGAAAGAGAAGAAAGCAGAACCAATCTCCAAA
GAAGTCTCGAACGAGGAAAGAGAACAAATTGTCGTCAAAACCGAGAANTT
CTAGAAGAAGCGAAAGAGAAGAAAGCAGAACCAATCTCCAAAGAAGTCTC
GAACGAGGAAAGAGAACAAATTGTCGTCAAAACCGAGAAGTCTGACCATA
ATACTGAAAACATATTCCCAGAAGAAGCTCCGGCGGTTGTGGAAATTCAT
GATGCAATAGTTGGATCATCAGAACCTTTAGACGCCAGTACCCCTGCTAA
AGATAACAAAACCACTACTGTCATCCCTGCTCAAAGTGAGCTAATCGTCG
ACACAACTGGAGATGAAGGGGGAGAAAAAACGTATGAATCTCCTGTCCCT
CCAGTACCTCAAAAAGGCCTTTCTAAAAATGATACTTTAGATTCGAATGT
TTCATCGACCGACTTGAACGATACTTGGTCTGTGGTATGCGACCATTACA
AAACTCTCCCATTGCCAAACTCACCCTGGCATAGCTATCAGGAAGCATCT
GCGGGACAAGATACACCATCTTTGCCGTTAGATCCGAAGAATTACACGCC
GTTGATTGCGGAGAGCGACGGTCGAGAGAACACGTTCGCATCTTCCATTA
CTTCTGCTGTTAATTTTAAAGACTTTGAAAGGGAATTGTCTTTTGGACCA
TCGCTGGCGGATAAAGTTGACGGCGATGGTAATTATGCTTCTCTGGTTGC
TCATTCGAAGAGAGAGGTGGCTGCTAGGAAAGACGCTCTTTTGAAACCGT
GTTACGTTGTGAGCATTGGTGTTGGACACATCGACTTTCGCAGACCGAGT
AAGCGTGGTAGTAAAACTGCTGAGTTCTTTCGCGCACTGAGTACAGGTGG
TGCACAACCAGAATCAATGCTTATTGCATGGAAAATAAGTTAATTAATCT
TAGTTACTTGAATTTTTTTCTTCTGTTTTTTTTAATTATTCTAATTTTCT
AGTGAATTTTTTTCTCTGGTAATATTTGTAAATTATTATATAGAATAGAA
TTTTTAATTTTCACTTAAATTTTATCGAAATAATTTTCTATGAGTTTTCC
TTGTGATCGATATGGAAATGTTTGCTGGTCTTCTTTGTGCACAAACCTGA
TTTCACAGTTCAATTAGTACAATGCAAGTCAGGCCCAATAAATTTAGATC
ATTCAGCCCGATTAATTCGCATGTCAAGGATGATGCAATTGTTGATGAAT
GTCATGTATTCGACAAATTTTCCCCTGATTGTTAGCGTTTTAGCTGACTG
TTTCTTTTTTTCATTTTTCTGTTAATTACTTATTTTTTACTCACCCATAT
TGCACCTTAATTGTTTTATGAATAATTCATATATAATTTATATATTTTTG
ATACAACAAACAAATTTTATTATAGGCACTTGAGATAATTATGAAATAAT
TTTATTTTATACACCATACTTAGATAATCATAGCATAGATAGATAAATAT
AATATATATAATCGAAAATGATACAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044883	XLOC_044883	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_73	supercontig	scaffold_73:11611..24937 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.23035e-09	1.84024e-06	0	0.093879	0	0	0	0	0	0	0	0	0	0	0	0	0	3.22159e-09	0	0	0	6.04244e-10	2.71252e-08	2.74358e-10	0	0	2.71964e-06	0	5.52913e-09	4.22004e-08

Blast

[Close]

BLAST of TCONS_00072282 vs. Swiss-Prot (Human)
Match: ARHGA (Rho guanine nucleotide exchange factor 10 OS=Homo sapiens GN=ARHGEF10 PE=1 SV=4)

HSP 1 Score: 243.047 bits (619), Expect = 1.160e-109
Identity = 146/400 (36.50%), Postives = 238/400 (59.50%), Query Frame = 1

Query:  979 NLDLEKDMYVEVNIDDEMMFPAVLPPLEDDADEFQLKRYQIVKCILENEKVYVTSLNRLINEYEMPLRKR--NIISDDRIKVIFRHVHEIIQCHQLFSMALTDRTKEWSTNDVIGDVIYASFSKSMALKAYTSFVHNFSYAMESIKETCKLVPAFLSFLKTRSSNISTYYQVFKESAKNHLNRNSTKQSLYDLMRQPLERIPQLVTLTQELTKITPLLHPDHFPLQMALTHLECFSETLAEKKRDSMYKHKVRQL-----DNYCIGLEKPLSSKNRYYVRHDDMILCIV-DEGKIVKTKLRRLFILNDLLICAGIXXXXXX-XXXXXXXXFQIKWCVPINDVQILDVGSGISFQSHKQTLTT----KYSHMSSPRP-----GVGDAPKVLEDLQHDIEVI 2124
            +L+ E++++++V+        A+L P+ +   + Q+ R  I+  ++++EK YV +L R++ +YE PL +    ++S+ ++K +F  V EI+QCH LF +AL  R  EW + ++IGDV  ASFSKSM L AY+ +V+NFS A+  +K+TC   PAFL FLK             +E++ +       + +LY LM +P++R PQ + L Q++ K T   HPD  PLQMALT LE  +E L E+KRD+  + +V+Q+     + Y   L K LSS +RY +R DDMI  +  D G+IVKTK RR+F+LND+L+CA + ++P    + ++S+++ +KW VP+  V  ++ GS      H + L        + +++ +P     G G   + L++L HD+ VI
Sbjct:  388 SLEEEQNLFIDVDCKHPE---AILTPMPEGLSQQQVVRRYILGSVVDSEKNYVDALKRILEQYEKPLSEMEPKVLSERKLKTVFYRVKEILQCHSLFQIALASRVSEWDSVEMIGDVFVASFSKSMVLDAYSEYVNNFSTAVAVLKKTCATKPAFLEFLKQE-----------QEASPD-------RTTLYSLMMKPIQRFPQFILLLQDMLKNTSKGHPDRLPLQMALTELETLAEKLNERKRDADQRCEVKQIAKAINERY---LNKLLSSGSRYLIRSDDMIETVYNDRGEIVKTKERRVFMLNDVLMCATVSSRPSHDSRVMSSQRYLLKWSVPLGHVDAIEYGSSAGTGEHSRHLAVHPPESLAVVANAKPNKVYMGPGQLYQDLQNLLHDLNVI 763

HSP 2 Score: 175.252 bits (443), Expect = 1.160e-109
Identity = 127/470 (27.02%), Postives = 212/470 (45.11%), Query Frame = 2

Query: 2135 IKKVTQWYNDVKSFYERERELVNMNW----------------------IEIAIPSKDPKNENIRY---LFNVHSADKRMEWLAEFENVKLRLTHNNNPGWYLQEDNIYDGEAAVLRRTLPLLSNLMPMFIIENKH-KVTCSL-----------EVSMTTTMKPILWLFSGSDHLGMITLMEMDMTSVPKVMESFVACETRICCAERVP-----------EDGFYSLVPYIQNVSVWVGTMAGRILLFDPN---IEERYPSLHTTLKDAVISLKYCRNRMFAGLANGTLACFRRKVEGNWDLSNPTIVCLDTNGVLSMTEVVGHLWCGCASNVYVVNTVTLAIERKLTV---EGGGVKHLVAYGIGVWVSSWRSSKLQLYHAETLDQLQTLNVSTAVSRMKNDIDINVEKIVP--EKLYVTSIMARSGLLWVGTDQGLILTYPLPKLGGIPKVNGSACISFHGHDGPVRHL 3376
            I ++TQ   ++K  Y+   + V  +W                      I++ +P K  K+    +   +FN  +   +  W+   +  KL L   N+ GW+  ED   DG   + +   PLL   MP+ + + +  K+ C+            +    +T    LW+ S +  +G I ++     S PKV+E F   E+RI C   VP            D     V      ++ VGT  G I ++  +    + R     T  K  V+SL      ++AGL NG +A + R  +G+WD     ++ L    V S+  +   LW      V++++  T A+E +L     EG  + H+   G+G+W++    S L+L+H ETL  LQ +N++T V  M           +P  ++L VTS++   GLL VGT  G+++  P+P+L GIPKV G   +S+H H+ PV+ +
Sbjct:  763 IGQITQLIGNLKGNYQNLNQSVAHDWTSGLQRLILKKEDEIRAADCCRIQLQLPGKQDKSGRPTFFTAVFNTFTPAIKESWVNSLQMAKLALEEENHMGWFCVED---DGNH-IKKEKHPLLVGHMPVMVAKQQEFKIECAAYNPEPYLNNESQPDSFSTAHGFLWIGSCTHQMGQIAIVSF-QNSTPKVIECF-NVESRILCMLYVPVEEKRREPGAPPDPETPAVRASDVPTICVGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTSQSLYAGLVNGAVASYARAPDGSWDSEPQKVIKLGVLPVRSLLMMEDTLWAASGGQVFIISVETHAVEGQLEAHQEEGMVISHMAVSGVGIWIAFTSGSTLRLFHTETLKHLQDINIATPVHNM-----------LPGHQRLSVTSLLVCHGLLMVGTSLGVLVALPVPRLQGIPKVTGRGMVSYHAHNSPVKFI 1215

The following BLAST results are available for this feature:

BLAST of TCONS_00072282 vs. Swiss-Prot (Human)

BLAST of TCONS_00072282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ARHGA	1.160e-109	36.50	Rho guanine nucleotide exchange factor 10 OS=Homo ...	[more]

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TCONS_00072282 (transcript) - C. hemisphaerica