TCONS_00072254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072254
Unique NameTCONS_00072254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072254 ID=TCONS_00072254|Name=TCONS_00072254|organism=Clytia hemisphaerica|type=transcript|length=377bp
GCCGAGGATACTTCCTTGGGGAACACCATTTAGTACGGTTAGTCTGTTCG
ATTCCTTGTCATTGATCTGTACGAATTGTAGACGGTTTGATAGGTAACTT
GCCATTAGTAGCAATGCAGACTTTGAAAAGTTAAGTTTGTGAAGCTTTTC
AATCATTATTTCGAAATCGACTGTGTCAAATGCTTTCGAGAAATCAGCCA
TCACAGAAAGAGTGACTTCACCACTATCCATCGCcttgatgatatcactc
ttgATTTTCATACATGTTGTGATCGTACAGTGTCCTTTTCGAAATCCAGA
TTGGTGGTTGGATAGAAGTTTACGGGATTCGATGTGATCGACCATTTGAA
GCATTAGAATTCTTTCGTATACTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00072254-protein

>TCONS_00072254-protein ID=TCONS_00072254-protein|Name=TCONS_00072254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
KVYERILMLQMVDHIESRKLLSNHQSGFRKGHCTITTCMKIKSDIIKAMD
SGEVTLSVMADFSKAFDTVDFEIMIEKLHKLNFSKSALLLMASYLSNRLQ
FVQINDKESNRLTVLNGVPQGSILG
Run BLAST on NCBI

transcript from alignment at scaffold_71:1119869..1120245

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072254 ID=TCONS_00072254|Name=TCONS_00072254|organism=Clytia hemisphaerica|type=transcript|length=377bp|location=Sequence derived from alignment at scaffold_71:1119869..1120245 (Clytia hemisphaerica)
CAAAAGTATACGAAAGAATTCTAATGCTTCAAATGGTCGATCACATCGAA
TCCCGTAAACTTCTATCCAACCACCAATCTGGATTTCGAAAAGGACACTG
TACGATCACAACATGTATGAAAATcaagagtgatatcatcaagGCGATGG
ATAGTGGTGAAGTCACTCTTTCTGTGATGGCTGATTTCTCGAAAGCATTT
GACACAGTCGATTTCGAAATAATGATTGAAAAGCTTCACAAACTTAACTT
TTCAAAGTCTGCATTGCTACTAATGGCAAGTTACCTATCAAACCGTCTAC
AATTCGTACAGATCAATGACAAGGAATCGAACAGACTAACCGTACTAAAT
GGTGTTCCCCAAGGAAGTATCCTCGGC

Coding sequence (CDS) from alignment at scaffold_71:1119869..1120245

>TCONS_00072254 ID=TCONS_00072254|Name=TCONS_00072254|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_71:1119869..1120245 (Clytia hemisphaerica)
AAAGTATACGAAAGAATTCTAATGCTTCAAATGGTCGATCACATCGAATC
CCGTAAACTTCTATCCAACCACCAATCTGGATTTCGAAAAGGACACTGTA
CGATCACAACATGTATGAAAATcaagagtgatatcatcaagGCGATGGAT
AGTGGTGAAGTCACTCTTTCTGTGATGGCTGATTTCTCGAAAGCATTTGA
CACAGTCGATTTCGAAATAATGATTGAAAAGCTTCACAAACTTAACTTTT
CAAAGTCTGCATTGCTACTAATGGCAAGTTACCTATCAAACCGTCTACAA
TTCGTACAGATCAATGACAAGGAATCGAACAGACTAACCGTACTAAATGG
TGTTCCCCAAGGAAGTATCCTCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044866XLOC_044866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072254-exon-scaffold_71-1491911889:1119869..1120245TCONS_00072254-exon-scaffold_71-1491911889:1119869..1120245Clytia hemisphaericaexon
TCONS_00072254-exon-scaffold_71-1510915933:1119869..1120245TCONS_00072254-exon-scaffold_71-1510915933:1119869..1120245Clytia hemisphaericaexon
TCONS_00072254-exon-scaffold_71-1575043694:1119869..1120245TCONS_00072254-exon-scaffold_71-1575043694:1119869..1120245Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072254-proteinTCONS_00072254-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1119869..1120245 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.972097	0.781929	0.957249	1.99576	0.284784	0.675121	0.805251	0.430196	0	0.220426	0.807816	0.35749	0.801889	0.64805	0.608777	0.560611	1.29986	2.10332	0.393496	0.686006	0.724581	0.554072	0.949282	1.33305	0.680194	0.322602	0.402593	1.19359	1.30509	1.95969
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top