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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072126 ID=TCONS_00072126|Name=TCONS_00072126|organism=Clytia hemisphaerica|type=transcript|length=2865bpRun BLAST on NCBI protein sequence of TCONS_00072126-protein >TCONS_00072126-protein ID=TCONS_00072126-protein|Name=TCONS_00072126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=721bp MDDKIKEENEIPTSEGKNDDIDDHEVDIEDVTSKEHAIENDHSMYSCSIHRun BLAST on NCBI transcript from alignment at scaffold_71:718564..733456+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072126 ID=TCONS_00072126|Name=TCONS_00072126|organism=Clytia hemisphaerica|type=transcript|length=14893bp|location=Sequence derived from alignment at scaffold_71:718564..733456+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:718564..733456+ >TCONS_00072126 ID=TCONS_00072126|Name=TCONS_00072126|organism=Clytia hemisphaerica|type=CDS|length=28158bp|location=Sequence derived from alignment at scaffold_71:718564..733456+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072126 vs. Swiss-Prot (Human)
Match: ZNF76 (Zinc finger protein 76 OS=Homo sapiens GN=ZNF76 PE=1 SV=2) HSP 1 Score: 347.436 bits (890), Expect = 4.155e-107 Identity = 167/278 (60.07%), Postives = 199/278 (71.58%), Query Frame = 1
Query: 898 ALAAETIVCVEEGCGKRFATDADLQKHSK-LHVGQKDFICEVVGCKKEYTTAHHLKVHKRQHSGEKPFICDWVDCGKMFTTGYGLKSHYRTHTNERPYKCFYDDCKKAFKTSGDLQKHIRTHTGERPFVCTYPGCNRSFTTSNIRKVHLRTHTGEKPYRCEVEGCGRTFASATNHKNHARIHTGERPYLCEVPGCMKRFTEYSSLYKHNIVHTHQKPYTCHLCLKTYRQTSTLAMHKRTVHGD-ELTEA------ELQGVNTIETTTYRPPKKIRRIS 1707
+A+ +V +E+ K D+ + ++ K VG + F C GC + YTTAHHLKVH+R H+G++P+ CD+ CGK F TGYGLKSH RTHT E+PYKC + C KAFKTSGDLQKH+RTHTGERPF C + GC RSFTTSNIRKVH+RTHTGE+PY C CGR F SATN+KNH RIHTGE+PY+C VPGC KRFTEYSSLYKH++VHTH KPYTC C KTYRQTSTLAMHKR+ HG+ E TE E Q + PP K RI+
Sbjct: 129 GFSADAVVALEQYASKVLH-DSQIPRNGKGQQVGDRAFRCGYKGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPEPHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCSTCGKTYRQTSTLAMHKRSAHGELEATEESEQALYEQQQLEAASAAEESPPPKRPRIA 405 HSP 2 Score: 161.77 bits (408), Expect = 1.457e-41 Identity = 80/216 (37.04%), Postives = 115/216 (53.24%), Query Frame = 1
Query: 802 VNTKFYKCDFEKCDKQFQSPYRLRLHSRTHAGALAAETIVCVEEGCGKRFATDADLQKHSKLHVGQKDFICEVVGCKKEYTTAHHLKVHKRQHSGEKPFICDWVDCGKMFTTGYGLKSHYRTHTNERPYKCFYDDCKKAFKTSGDLQKHIRTHTGERPFVCTYPGCNRSFTTSNIRKVHLRTHTGEKPYRCEVEGCGRTFASATNHKNHARIHTGE 1449
V + ++C ++ C + + + + L++H R H G C CGK FAT L+ H + H G+K + C C K + T+ L+ H R H+GE+PF C + CG+ FTT K H RTHT ERPY C C + F ++ + + H+R HTGE+P+VCT PGC + FT + H HT KPY C CG+T+ + H R GE
Sbjct: 160 VGDRAFRCGYKGCGRLYTTAHHLKVHERAHTG---DRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPEPHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCST--CGKTYRQTSTLAMHKRSAHGE 370 The following BLAST results are available for this feature:
BLAST of TCONS_00072126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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