TCONS_00072083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072083
Unique NameTCONS_00072083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072083 ID=TCONS_00072083|Name=TCONS_00072083|organism=Clytia hemisphaerica|type=transcript|length=310bp
TCagattttaaaagtgatttcACAGGCAACAAAATACGAAATAACAAACT
GTAGGCATCATCATGGACTTTTTCTTTGATGAAGCTAAATGAAATCTTTA
TTCCTGAAAAACAAGCACCAATCTCATTATTTCTACAaataataaaagaa
gaagaggGTTGAGAAGGTATACTGCCATTCTTATAATATTATTATTAATA
AACATTAAATCATCATGATTCACGTTTTAAAATAGATAGATACCACCGTG
AAGTCCGGTAACACCTGGTAACTTGCAATGTTACATCAGTGGAGAGatac
ttgcatagcc
Run BLAST on NCBI

transcript from alignment at scaffold_70:49500..49809

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072083 ID=TCONS_00072083|Name=TCONS_00072083|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at scaffold_70:49500..49809 (Clytia hemisphaerica)
ggctatgcaagtatCTCTCCACTGATGTAACATTGCAAGTTACCAGGTGT
TACCGGACTTCACGGTGGTATCTATCTATTTTAAAACGTGAATCATGATG
ATTTAATGTTTATTAATAATAATATTATAAGAATGGCAGTATACCTTCTC
AACcctcttcttcttttattattTGTAGAAATAATGAGATTGGTGCTTGT
TTTTCAGGAATAAAGATTTCATTTAGCTTCATCAAAGAAAAAGTCCATGA
TGATGCCTACAGTTTGTTATTTCGTATTTTGTTGCCTGTgaaatcacttt
taaaatctGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044770XLOC_044770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072083-exon-scaffold_70-1491911889:49500..49809TCONS_00072083-exon-scaffold_70-1491911889:49500..49809Clytia hemisphaericaexon
TCONS_00072083-exon-scaffold_70-1510915933:49500..49809TCONS_00072083-exon-scaffold_70-1510915933:49500..49809Clytia hemisphaericaexon
TCONS_00072083-exon-scaffold_70-1575043694:49500..49809TCONS_00072083-exon-scaffold_70-1575043694:49500..49809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:49500..49809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75556	4.10868	2.38529	3.11151	0	0	0.451411	0	5.02989	5.49735	4.98014	6.78133	7.23893	5.33514	4.98433	9.62812	4.48084	6.754	0	5.85854	10.8632	7.45129	4.83095	5.85604	0	0	6.25879	4.6243	1.55883	7.14691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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