|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072002 ID=TCONS_00072002|Name=TCONS_00072002|organism=Clytia hemisphaerica|type=transcript|length=1454bp
GAAAAACGAAGGTAAAAacgaaaagtgaaaaaaatgcgTTATTATGTCTT
ACCgtcaaatttgaaatattttctattgttatcaattttcatattgGTAG
TAGCCAATTTATTGATTTTGAGTAGACtcgattctctaaagaatgatcTA
TTATCGAATCTGTTTGAAACCACAAAAGAACCAGAACCTGACAGAGCAAC
ATTAGAGATGTTAGAAAACAAACCAGAGTTTGAACGACCATATAAAGAAT
CTTACCAGACGAAGAAAAGTTTCGAAGATAAACTTCTACAGTACATATCT
TTCCGAGCTAAAGAAAAGCAACAAAATTTACATGTTCAAATTAATACTAA
CACGTATGTCCATGAAAAggcgaagaaaattttcaagataaaaaagaaCC
AAACTTCGATGGAATTAACGAGTGATACTTCAACAGAACCCGAAACGATA
ATTCTTAGATCAACGGAATCTCAAAAGAGAGCCCAAAATCCAACATCAGC
TTCTCATGAAACTCGTCAAAGGCCTCAAACGACAGGACCAGTACCTTCAG
AATCTGCAGAAAGCGCAGAAAGTGATTCTAATGGATCaactaaaatcaaa
tttcttcAAGGAGCTATAATGGATAAATGGTTAGATACATGTATGAATAT
GACCACCTGGAATAACCGTTGGTTTCCTTTATTCCCAAAGATCCCTCAAG
AATCAATCATAGTTCAACAGTTGAATGATCCTAACCTAATCATGGGTAGC
CTATTACGAAGGGTCTACGGATTCATGCGTGTAAACCTGTCCGGAGAATA
TCATTTTCAACTAAAAACTCACGAAGGTGCAGAGGTTTTATTAGAAGACA
CAGGAATGACTATGCAGAATTTTACGGATGATTTTAGCGATTTGGAGAAG
CTTCGAAATTGGAAAGAACTAATGTACATCAACGTTACACTAAAGCAGAT
GCAGGaacaaaatatctttcaaagaggGGTCCTGATTCATTATAAAAGCC
CGATTCAAAAAGTTTATTTAAAGTGTGACCAAGTATACCATATTGAAATT
TTACAAGGTGGGCGCTTTTATTCAGATTATCATTTGAAATGGAAGAAGGC
AACTGACAAGGGAGAACTTCGTAAGATAGATAAAGATTCGCTTTTTCATA
CACATTCTACTAACTCTCGAAGTCTACCATCTTTACTTTGGCACAAAAAC
CCACCACGCGAAAGATATTCTTATAGTAGAGAAGAAAAGCAACGTCTTGA
CTTTTACAAGCATAAAACACTTGATATTTCAAACATTCTGAGGCTGtccg
aaaatttaaaatgtccgAAAACCGAATGGTATAAACGAAATATTACTCAA
TTGTATCTTGGTCGAATTTTTGTTGATTATCAGCTTGTTTATCCAAAGAA
TTTTTTGGAATACAAGGGTGGCTGGCCTTTGAACCATTTATTGTTGAATG
AGAC Run BLAST on NCBI protein sequence of TCONS_00072002-protein >TCONS_00072002-protein ID=TCONS_00072002-protein|Name=TCONS_00072002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
MRYYVLPSNLKYFLLLSIFILVVANLLILSRLDSLKNDLLSNLFETTKEP
EPDRATLEMLENKPEFERPYKESYQTKKSFEDKLLQYISFRAKEKQQNLH
VQINTNTYVHEKAKKIFKIKKNQTSMELTSDTSTEPETIILRSTESQKRA
QNPTSASHETRQRPQTTGPVPSESAESAESDSNGSTKIKFLQGAIMDKWL
DTCMNMTTWNNRWFPLFPKIPQESIIVQQLNDPNLIMGSLLRRVYGFMRV
NLSGEYHFQLKTHEGAEVLLEDTGMTMQNFTDDFSDLEKLRNWKELMYIN
VTLKQMQEQNIFQRGVLIHYKSPIQKVYLKCDQVYHIEILQGGRFYSDYH
LKWKKATDKGELRKIDKDSLFHTHSTNSRSLPSLLWHKNPPRERYSYSRE
EKQRLDFYKHKTLDISNILRLSENLKCPKTEWYKRNITQLYLGRIFVDYQ
LVYPKNFLEYKGGWPLNHLLLNE Run BLAST on NCBI transcript from alignment at scaffold_66:72868..74321 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072002 ID=TCONS_00072002|Name=TCONS_00072002|organism=Clytia hemisphaerica|type=transcript|length=1454bp|location=Sequence derived from alignment at scaffold_66:72868..74321 (Clytia hemisphaerica)
GTCTCATTCAACAATAAATGGTTCAAAGGCCAGCCACCCTTGTATTCCAA
AAAATTCTTTGGATAAACAAGCTGATAATCAACAAAAATTCGACCAAGAT
ACAATTGAGTAATATTTCGTTTATACCATTCGGTTTTcggacattttaaa
ttttcggaCAGCCTCAGAATGTTTGAAATATCAAGTGTTTTATGCTTGTA
AAAGTCAAGACGTTGCTTTTCTTCTCTACTATAAGAATATCTTTCGCGTG
GTGGGTTTTTGTGCCAAAGTAAAGATGGTAGACTTCGAGAGTTAGTAGAA
TGTGTATGAAAAAGCGAATCTTTATCTATCTTACGAAGTTCTCCCTTGTC
AGTTGCCTTCTTCCATTTCAAATGATAATCTGAATAAAAGCGCCCACCTT
GTAAAATTTCAATATGGTATACTTGGTCACACTTTAAATAAACTTTTTGA
ATCGGGCTTTTATAATGAATCAGGACCcctctttgaaagatattttgttC
CTGCATCTGCTTTAGTGTAACGTTGATGTACATTAGTTCTTTCCAATTTC
GAAGCTTCTCCAAATCGCTAAAATCATCCGTAAAATTCTGCATAGTCATT
CCTGTGTCTTCTAATAAAACCTCTGCACCTTCGTGAGTTTTTAGTTGAAA
ATGATATTCTCCGGACAGGTTTACACGCATGAATCCGTAGACCCTTCGTA
ATAGGCTACCCATGATTAGGTTAGGATCATTCAACTGTTGAACTATGATT
GATTCTTGAGGGATCTTTGGGAATAAAGGAAACCAACGGTTATTCCAGGT
GGTCATATTCATACATGTATCTAACCATTTATCCATTATAGCTCCTTgaa
gaaatttgattttagttGATCCATTAGAATCACTTTCTGCGCTTTCTGCA
GATTCTGAAGGTACTGGTCCTGTCGTTTGAGGCCTTTGACGAGTTTCATG
AGAAGCTGATGTTGGATTTTGGGCTCTCTTTTGAGATTCCGTTGATCTAA
GAATTATCGTTTCGGGTTCTGTTGAAGTATCACTCGTTAATTCCATCGAA
GTTTGGttcttttttatcttgaaaattttcttcgccTTTTCATGGACATA
CGTGTTAGTATTAATTTGAACATGTAAATTTTGTTGCTTTTCTTTAGCTC
GGAAAGATATGTACTGTAGAAGTTTATCTTCGAAACTTTTCTTCGTCTGG
TAAGATTCTTTATATGGTCGTTCAAACTCTGGTTTGTTTTCTAACATCTC
TAATGTTGCTCTGTCAGGTTCTGGTTCTTTTGTGGTTTCAAACAGATTCG
ATAATAgatcattctttagagaatcgaGTCTACTCAAAATCAATAAATTG
GCTACTACcaatatgaaaattgataacaatagaaaatatttcaaatttga
cGGTAAGACATAATAAcgcatttttttcacttttcgtTTTTACCTTCGTT
TTTC Coding sequence (CDS) from alignment at scaffold_66:72868..74321 >TCONS_00072002 ID=TCONS_00072002|Name=TCONS_00072002|organism=Clytia hemisphaerica|type=CDS|length=1419bp|location=Sequence derived from alignment at scaffold_66:72868..74321 (Clytia hemisphaerica)
CTCATTCAACAATAAATGGTTCAAAGGCCAGCCACCCTTGTATTCCAAAA
AATTCTTTGGATAAACAAGCTGATAATCAACAAAAATTCGACCAAGATAC
AATTGAGTAATATTTCGTTTATACCATTCGGTTTTcggacattttaaatt
ttcggaCAGCCTCAGAATGTTTGAAATATCAAGTGTTTTATGCTTGTAAA
AGTCAAGACGTTGCTTTTCTTCTCTACTATAAGAATATCTTTCGCGTGGT
GGGTTTTTGTGCCAAAGTAAAGATGGTAGACTTCGAGAGTTAGTAGAATG
TGTATGAAAAAGCGAATCTTTATCTATCTTACGAAGTTCTCCCTTGTCAG
TTGCCTTCTTCCATTTCAAATGATAATCTGAATAAAAGCGCCCACCTTGT
AAAATTTCAATATGGTATACTTGGTCACACTTTAAATAAACTTTTTGAAT
CGGGCTTTTATAATGAATCAGGACCcctctttgaaagatattttgttCCT
GCATCTGCTTTAGTGTAACGTTGATGTACATTAGTTCTTTCCAATTTCGA
AGCTTCTCCAAATCGCTAAAATCATCCGTAAAATTCTGCATAGTCATTCC
TGTGTCTTCTAATAAAACCTCTGCACCTTCGTGAGTTTTTAGTTGAAAAT
GATATTCTCCGGACAGGTTTACACGCATGAATCCGTAGACCCTTCGTAAT
AGGCTACCCATGATTAGGTTAGGATCATTCAACTGTTGAACTATGATTGA
TTCTTGAGGGATCTTTGGGAATAAAGGAAACCAACGGTTATTCCAGGTGG
TCATATTCATACATGTATCTAACCATTTATCCATTATAGCTCCTTgaaga
aatttgattttagttGATCCATTAGAATCACTTTCTGCGCTTTCTGCAGA
TTCTGAAGGTACTGGTCCTGTCGTTTGAGGCCTTTGACGAGTTTCATGAG
AAGCTGATGTTGGATTTTGGGCTCTCTTTTGAGATTCCGTTGATCTAAGA
ATTATCGTTTCGGGTTCTGTTGAAGTATCACTCGTTAATTCCATCGAAGT
TTGGttcttttttatcttgaaaattttcttcgccTTTTCATGGACATACG
TGTTAGTATTAATTTGAACATGTAAATTTTGTTGCTTTTCTTTAGCTCGG
AAAGATATGTACTGTAGAAGTTTATCTTCGAAACTTTTCTTCGTCTGGTA
AGATTCTTTATATGGTCGTTCAAACTCTGGTTTGTTTTCTAACATCTCTA
ATGTTGCTCTGTCAGGTTCTGGTTCTTTTGTGGTTTCAAACAGATTCGAT
AATAgatcattctttagagaatcgaGTCTACTCAAAATCAATAAATTGGC
TACTACcaatatgaaaattgataacaatagaaaatatttcaaatttgacG
GTAAGACATAATAAcgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072002-exon-scaffold_66-1491911889:72868..74321 | TCONS_00072002-exon-scaffold_66-1491911889:72868..74321 | Clytia hemisphaerica | exon |
| TCONS_00072002-exon-scaffold_66-1510915933:72868..74321 | TCONS_00072002-exon-scaffold_66-1510915933:72868..74321 | Clytia hemisphaerica | exon |
| TCONS_00072002-exon-scaffold_66-1575043694:72868..74321 | TCONS_00072002-exon-scaffold_66-1575043694:72868..74321 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_66 | supercontig | scaffold_66:72868..74321 . |
Blast
The following BLAST results are available for this feature:
|
