TCONS_00071965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071965
Unique NameTCONS_00071965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071965 ID=TCONS_00071965|Name=TCONS_00071965|organism=Clytia hemisphaerica|type=transcript|length=283bp
GTGTGGGAATCACTAAATCGATAGCtttatttttgtatatatatCTTCTT
GTATCATAGTTCTTCTCTTGTATAAATATTATATAGCTAGGCTACCATTT
TATAaattaaaagtttgtttacatttgacaTCCCTTCATGGTGACTCACG
AGTATTTTGCAGAACAGATCAGTGTCTATGAGTCAGAGTCACCATGCCAC
TTTGTTGAGTGTTCTGTGTTTTGTCTTTGCTGCCCATGCTCTTTGGGGCC
TGGTAACGAGTTTGACCTTTCTGCCAGGctcaa
Run BLAST on NCBI

transcript from alignment at scaffold_65:245925..246207

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071965 ID=TCONS_00071965|Name=TCONS_00071965|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at scaffold_65:245925..246207 (Clytia hemisphaerica)
ttgagCCTGGCAGAAAGGTCAAACTCGTTACCAGGCCCCAAAGAGCATGG
GCAGCAAAGACAAAACACAGAACACTCAACAAAGTGGCATGGTGACTCTG
ACTCATAGACACTGATCTGTTCTGCAAAATACTCGTGAGTCACCATGAAG
GGAtgtcaaatgtaaacaaacttttaattTATAAAATGGTAGCCTAGCTA
TATAATATTTATACAAGAGAAGAACTATGATACAAGAAGatatatataca
aaaataaaGCTATCGATTTAGTGATTCCCACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044681XLOC_044681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071965-exon-scaffold_65-1491911889:245925..246207TCONS_00071965-exon-scaffold_65-1491911889:245925..246207Clytia hemisphaericaexon
TCONS_00071965-exon-scaffold_65-1510915933:245925..246207TCONS_00071965-exon-scaffold_65-1510915933:245925..246207Clytia hemisphaericaexon
TCONS_00071965-exon-scaffold_65-1575043694:245925..246207TCONS_00071965-exon-scaffold_65-1575043694:245925..246207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:245925..246207 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.13042	6.86428	5.27115	3.71416	3.5278	2.18351	2.25601	1.66577	8.7582	12.7739	20.7492	10.5788	11.4523	12.0797	10.6604	9.15006	11.4755	9.71181	15.2148	10.48	55.8573	54.2942	34.5896	34.7168	1.42669	2.48962	83.819	70.417	45.5436	52.5572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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