TCONS_00071919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071919
Unique NameTCONS_00071919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071919 ID=TCONS_00071919|Name=TCONS_00071919|organism=Clytia hemisphaerica|type=transcript|length=594bp
tCTAGATGAAAGAAAATGTAGAAATaataaaaacgaagaaaaacgAAAGA
GCATTAAACTTGTCTTCTGCGAACAGATGGTatcttaaatcaaaacaaaa
tgaaaagaataacAAAGATAGAAAACCGTGGAGGAAGAACAGTCCAAAGC
CACAACCTATAGTCTTTCATCAACAGAATCTATTGAAGAATGCACAAAAC
GAAGGTTATTTACACGATTTGACGGAAGAAGTTCTCCTTGAGAACTCAGA
AAATGTCCACAACAAACGTTCAACCTACCCTGGTGACGTTGTCTATCTCT
CAGCTGCTTCACAACACCTGCAACAGGTTTCCTTACTGGATTTATGCGAA
CAATTGGAGATTTGTGATCTGAGTAATAATTTCATTGATGACATCGGAGC
GTTGAGGTGGTGTCACAATCTGTTCTTTCTAGATGTACATTCAAATCAGC
TGTCAAGTTTGCCAGGTAAAAAGTTCTGGTCCTCTTTACCCAAACTATCA
TTGGTTTACCTTCACGACAATGCTTTTTCACGTTTGGAGGAGATCAAATA
TCTTTCTCATTCTCCATCGCTGAGTTCTTTGACACTTTACGATT
Run BLAST on NCBI

transcript from alignment at scaffold_65:93684..94934+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071919 ID=TCONS_00071919|Name=TCONS_00071919|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at scaffold_65:93684..94934+ (Clytia hemisphaerica)
tCTAGATGAAAGAAAATGTAGAAATaataaaaacgaagaaaaacgAAAGA
GCATTAAACTTGTCTTCTGCGAACAGATGGTatcttaaatcaaaacaaaa
tgaaaagaataacAAAGATAGAAAACCGTGGAGGAAGAACAGTCCAAAGC
CACAACCTATAGTCTTTCATCAACAGAATCTATTGAAGAATGCACAAAAC
GAAGGTATGTACCTTGCTTAATAGCTAGAACATCATCGATGATTtgaaat
accttattacacgaatattactagtcattttattaacacgaattgaaaaa
tttcgtgttaataaaaacccccttaattaaaaccagccgttgTATCCttg
aaaaaacaaataaaattcgtgttaattttttccgtgttaatttcaaggcc
gttgaatacttgcctagtaatattcgtaactcaattttcgaaaaattgaa
atacggCTTTCTTGCTTTTATAAGGGTATGCATATcctcaaatttaaatt
ttgcagGTTATTTACACGATTTGACGGAAGAAGTTCTCCTTGAGAACTCA
GAAAATGTCCACAACAAACGTTCAACCTACCCTGGTGACGTTGTCTATCT
CTCAGCTGCTTCACAACACCTGCAACAGGTTTCCTTACTGGATTTATGCG
AACAATTGGAGATTTGTGATCTGAGTAATAATTTCATTGATGACATCGGA
GCGTTGAGGTGGTGTCACAATCTGTTCTTTCTAGATGTACATTCAAATCA
GGTAATCAGGTTGCGTAGATGTTTTAACGTTTAGTATGTTTTGTACAACA
ACTTAGCAAAATTGTCCCTGACGAGCCCTGTTGAAAGGCCTATACATGAC
GCTTCCATTTTGTGCTCTTCCAAATTGTTGTTATCGAAGAAAGCTTcaat
ttgtaaattttaatttttcagtttttcaaaaatcgttatCATGAATTTTC
AGATATCGCTATAAATGTCGTAGAAATTAGATTTGAAGGGACCATATTGT
TGTCAAtggtggtaaaacattttcctaGTCGCTAGATTTTAGTATTAATA
ATGAAATATTTAGTTATCATACTTCAACATATTCAAAGCTTCTTGTCTGT
TTTCAGCTGTCAAGTTTGCCAGGTAAAAAGTTCTGGTCCTCTTTACCCAA
ACTATCATTGGTTTACCTTCACGACAATGCTTTTTCACGTTTGGAGGAGA
TCAAATATCTTTCTCATTCTCCATCGCTGAGTTCTTTGACACTTTACGAT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044656XLOC_044656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071919-exon-scaffold_65-1491911889:93684..93887TCONS_00071919-exon-scaffold_65-1491911889:93684..93887Clytia hemisphaericaexon
TCONS_00071919-exon-scaffold_65-1510915933:93684..93887TCONS_00071919-exon-scaffold_65-1510915933:93684..93887Clytia hemisphaericaexon
TCONS_00071919-exon-scaffold_65-1575043694:93684..93887TCONS_00071919-exon-scaffold_65-1575043694:93684..93887Clytia hemisphaericaexon
TCONS_00071919-exon-scaffold_65-1491911889:94190..94434TCONS_00071919-exon-scaffold_65-1491911889:94190..94434Clytia hemisphaericaexon
TCONS_00071919-exon-scaffold_65-1510915933:94190..94434TCONS_00071919-exon-scaffold_65-1510915933:94190..94434Clytia hemisphaericaexon
TCONS_00071919-exon-scaffold_65-1575043694:94190..94434TCONS_00071919-exon-scaffold_65-1575043694:94190..94434Clytia hemisphaericaexon
TCONS_00071919-exon-scaffold_65-1491911889:94790..94934TCONS_00071919-exon-scaffold_65-1491911889:94790..94934Clytia hemisphaericaexon
TCONS_00071919-exon-scaffold_65-1510915933:94790..94934TCONS_00071919-exon-scaffold_65-1510915933:94790..94934Clytia hemisphaericaexon
TCONS_00071919-exon-scaffold_65-1575043694:94790..94934TCONS_00071919-exon-scaffold_65-1575043694:94790..94934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:93684..94934 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.70496	4.81397	1.63958	1.475e-05	2.21438e-05	0	4.62046	4.59497	3.10363	2.96498	5.42823	1.85858	0.975097	0	1.27233	1.09098	0.355766	2.11432e-06	0.153933	1.01041	2.58378	2.57022	3.69801	1.87999	0	0	1.31771	2.3847	1.32963	1.07184
Blast
[Close]
BLAST of TCONS_00071919 vs. Swiss-Prot (Human)
Match: LRIQ3 (Leucine-rich repeat and IQ domain-containing protein 3 OS=Homo sapiens GN=LRRIQ3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.852e-19
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 3 
Query:  210 LHDLTEEVLLENSENVHNKRSTYPG--DVVYLSAASQHLQQVSLLDLCEQLEICDLSNNFIDDIGALRWCHNLFFLDVHSNQLSSLPGKKFWSSLPKLSLVYLHDNAFSRLEEI 545
             H    E L  + E  H   +   G  D V++     HL+ +  L  C  L +C  SNNFI DI  L+ C  L  LD+H NQ+ SLP  KFW+ L  L L+YLHDN F++L+ I
Sbjct:    2 FHGTVTEELTSHEEWSHYNENIREGQKDFVFVKFNGLHLKSMENLQSCISLRVCIFSNNFITDIHPLQSCIKLIKLDLHGNQIKSLPNTKFWNGLKNLKLLYLHDNGFAKLKNI 115
The following BLAST results are available for this feature:
BLAST of TCONS_00071919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRIQ35.852e-1940.35Leucine-rich repeat and IQ domain-containing prote... [more]
back to top