|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071886 ID=TCONS_00071886|Name=TCONS_00071886|organism=Clytia hemisphaerica|type=transcript|length=616bp
CCATGAGTTAGTAAATTGTACTTAATTGATTTTAAATAATGAGaatgtac
aattaaaataaatttacaatgaATATAAATttacaataaataaattttga
aaccacCAAGAATTTATTAAGACCACCAAAATTTATTAGGACCAgcaaga
atttttgaaattaatgaATAAATAATAATCTAAATTATTGCTTCCAAATG
TAACAAAAGTTTGTATGTGGGATGTTGTAAATATGGCAGTATTTGAGGTG
GTTGCGGAAAAAATGTTGGGTGTGGTGCTTGTGAAAAAAGTGTTGGGTGC
GGAGCTGCTTGCGGGAAAAATGTTGGTGCAGTGGTTGTGCGGTGGAAAAA
GTGCTGGTGTCTGATAAATCTTTATTGGTAGTTGTGCATACCGAGGTTGT
GGTTGGGGTCGTGGCAGTATCAATCATATTTGTGGTGGTGGTAAAGCGCT
AGGTTGTTCCTGGTGTTGATTTTGATGGTGGCCAGGATTTTGATGGTGGC
CAGGATTTTGATGGCATGAATTTTGGTGACATATGATAGACCTTTTCggc
tttccatccgccatcttgaattgtatgcaaaaatagaggaacaaaAAAGC
CGTgcttggatttagt Run BLAST on NCBI transcript from alignment at scaffold_64:293729..303113- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071886 ID=TCONS_00071886|Name=TCONS_00071886|organism=Clytia hemisphaerica|type=transcript|length=9385bp|location=Sequence derived from alignment at scaffold_64:293729..303113- (Clytia hemisphaerica)
CCATGAGTTAGTAAATTGTACTTAATTGATTTTAAATAATGAGAATGTAC
AATTAAAATAAATTTACAATGAATATAAATTTACAATAAATAAATTTTGA
AACCACCAAGAATTTATTAAGACCACCAAAATTTATTAGGACCAGCAAGA
ATTTTTGAAATTAATGAATAAATAATAATCTAAATTATTGCTTCCAAATG
TAACAAAAGTTTGTATGTGGGATGTTGTAAATATGGCAGTATTTGAGGTG
GTTGCGGAAAAAATGTTGGGTGTGGTGCTTGTGAAAAAAGTGTTGGGTGC
GGAGCTGCTTGCGGGAAAAATGTTGGTGCAGTGGTTGTGCGGTGGAAAAA
GTGCTGGTGTCTGATAAATCTTTATTGGTAGTTGTGCATACCGAGGTTGT
GGTTGGGGTCGTGGTAGTATTTGTGGTGGTGGTAAAGCGCTAGGTTGTTT
CTGGTGTTGATTTTGCTGGTGTTGATTTTAGTGGCAAGGATTTTGGTGGC
CAGGATTTTGGTGGTGTGGATTTATTTTGGTGACATATGATGAACCCAGC
TGACCGAAAGTACAATTACATAAATTATCATGGAAGTGAGCGCATAAAAG
ATGAATGTTTGGGAAATCAAAAGGACAACTTTTGTAAGGATGTTTTAAAT
TTTTTAAATATCAACGTTTGTGAATGACTCTTTAAATAAAGTCCCTTTCC
CCCAAAGCTTTCAACCTTGATGGGTGAATTGAATCAAATTGAATTGAATT
GAATATATTTTTCGCTGCAGTGCAGCAGAGGATAACCCAAAAAATACAAA
AAATTAGATCAAGAGCAGCCAGCGGCTAGAAATTACAGATTACCGTCAAC
TGCTCCAACTTGGAACGAGTGGTCGCAACATGAGACTTGTTGATATCTGG
TCTGTATTTTCACTTACTGTTAAATCTCTTTGACAACAAATTTTTTTGAT
TTGGTGATAACGCCACCAAGTTTATCAGTCATACTTTCTATCATAGCATG
TCACGATAACTTAAGGAAATCAATTTTCATAAGAGATTTTCATTTTTGCT
GACTTTAGTCAGTTCCAAGTCACATTTGTAAACATAAGTATTATTATATT
TTAAAGTAATATCGCGTTGGAAAGATAATTTTGAACAGATTGATTTGAGT
TCGCTAGGTTCGTTGCAATTATTTCTAGCTATTTAAATTAACAGTATCAC
TAAGACTTGCCTTATTATTCCACTCAAAATTATCTATTGGACGAATTTTT
ACTTGTATTATGACATGTTTCTATGTTCAAAAACTAGAAAATGCCTTTTC
TGAATTAGTTGGAACAGACGTTACATTAAGTTGATAAAAGAGCCAGTCAA
CACACTATTTTTCCCCAAAAGGATTGTTGACAGTCTATGTTTGTAAATCG
TGTATTTTGAAGCTAGATTATTTAGATTACTCTTACGCTGTTAAACTGTA
TATGCGAATTCTTATGTGATTATATTCTGAAAATATATCAAATAAAGTAA
TGAAAAATGTGATGCTTCCTCTTTTTTCTTGCGGTATTTTAACCAAACAA
TTTCGAGTATATGTTTCGCAAAAACCACTGATATTTAAACCTGATTTACC
CGAGTTTGAACTGTAAAGAGGCTGACGTGAGCAAACGGGTAAATCAGGTA
AACCCGAGAACCCTAGTTTCTATTTTTGGAATTTTTCCACCCGAAATACT
AGAGTAAATTGCTCATCTGGATTTTCGGGTATACCTCACGTCAATTACTT
GTGTTTAACCCTAGTATTACCCGAGTTAGTTTACCAGGGATATGGCCCCC
AAAACGGAGACGGCCCCCAAAACGGAGACGGCCCCCAAAACGGAGGTTTT
CATTAAAATGATTCTGACTTGTAGATTTATCAGAATTAAACGATTTTTGT
TTATTTTGAAAGAATGATGGTTATACTTAAAAATGAGCATGTTTTGCTGG
TTTGAGACGGATTCAAAATAACATATTTGCGTCTCAAGGAAATATTTTAA
CACCAAAATTAGATAAAAATTGCATATAACTCANGCCATTAGAAAAAAGC
TACCTATCTTTAATTAAGCGATTGAAAAATATTGTTGATATTGAAAATTT
TGAAAGAGAACTTCCAGGAAATAAAGTAGAGATGTTAAAGATTTCATGCA
GCAAAAATTTTTGTAAAATCTTTTTTCGTCTAGATTTGACAGAAATTTCA
AATTTGATCGCCGTTTTGGGGGCCACATACTGTATGTATTGTCTAGATAT
TTTGAATTTAACATCAATATCCGAATCAAGCCATGAATACTGTATCCTAA
CTAATAAATATTCAGGCTATCCCTGTGCTATCAAGTACTATCCCTGTCCG
TCTNCCCTAGAGTCAGCATTGACAAAACCGATAATTCTAAATATGAGAAA
AAGCAAAAAATCTTGGAATTCTATTCCTATCACCTTGAGTTAATAGTTTA
TAACAAAAAATTAACATTATATATNGATCACACAAATTTAGTGGACTATA
TGCTTGACTTGCCCTCCCTTGGATGGTTGAGTCTCAGGCAAAATTCCAAG
CACTTTTCCCACTGGCCGTTTTTTGATCTAGAAATTGAGTTTCAGCCATG
CCATTGCTATTATCTGAGACCCCCCCCCCCTAACGGACTCCTAGTTAAGA
GTTTATTAATGATATCAAGAATTAAAATGCAACAAAAATAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TAGTGACTATAATAGAATACACTTTAACCATGCATGGATAGGGGCCGCGG
CTCCACTTTGAAAGTGGTAGGTGTTAGGGTGATAGGGCCGTAGTTTAGTG
TCCCTTAATTAGTGTCTAAGGAGGCGCCAGGATGGTTGGCGCCGACGGGA
GAAAATTTTAGAGAATTAGCCCTTCTAGACTGGTTAAAACAGGTCTTTTT
TAAAGCTTATGGCCCCTGATGGAAAGAAATGCTTGAAGAACAAAAGAAAT
GCTTCAAGAACAAAAGAAACAAAGCTTTATTTATTAAAGTAAGATTTCAA
AATAAAAAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
ATTTCTAGCGGCCTTCTTAGTAAATCAATAAAACGGTTAATAATTCTACT
CTACAATAGAATAAAAAAATAAAACTGTAGGTAACAATAAAAAGAATGGC
CCTGAAAAAACAAATGTTTTGATATTTTTCTAATGAGCCTTCGATTCGAA
TGTTTTGATGTTGATTTCGTCAAAAGAATTGCAAGAGAGAAAAACACACA
AAGAGAGAAGAAAAAATATTATATTGTTGAAAGATATAAAGAATGCGAGA
GAAATTGAGCTTACCTTTGATTATAGAGTAAATAACTTTGACTATTGTTT
ACTAAGGCAATTACTTTTTTATTTTCTGGTTTACGGAATCGCCGACGTTT
TTTTTGCAAAAATAAAATAAAAATAAAATCAAAATTCATAGAAATTTTAT
TCATTTTTGCACTTCCGATTCTGTTTAATCTGCCATGAAATGGATTTTTT
TAGAAAACTTCATTTTATAAGAGCAGGAAAGGAAGATAAAAGGGTGTAAA
AACAGATCTCTTTTTCCCAATATGCTTCCTCCAATGGCGCTCAACACAAT
TTTCCAGCTGAAAAACTTTCTTTGATTTTCTGCTGTGTATGTAAGTTTCC
TCAAAACACATTTTATTTTCTCCAATATTAAAGTTTGAAAACAACAATTT
TATTTTTATTTTTTTCCATCCTCCGCTCCAAAAGATCATCTCCAAATGAC
TGTAAACCAGAAAATAAAAAAGTACTTGCCTAAGGTTTACTGTCTATATT
TTTCCGAATTTTCATGACTCAAAAAAAATTTTTTCTTCAAATATTGAGTT
TCAAAACTCAATTTAAAATTGAGTTTTCTGGCCGTATAACGGCCACAGAA
AAGTGCTTGGAATTTTCACTGAGTCTGACTTCCCGTTTACCGTTTGGGTG
GGCAATTTCAAAAGGAATTTGATAATTGATTAGGCAAGACTAGGAAGGTA
CTGGCTAAACAATAAGGAACCTAAAACTTCAAAAATTATAGATTTGCGAA
AATTTAGACGATGTTATCGTCCTATACAGTGATTGATAGTAAAGGCGGGG
AAATATGGCCGTTTGGCGTTAAGGCGATGCACGGAGAAAAAAAATCGGCG
GGAGAGTTTCGAAAAAAGATTACCAAACTCTACCGACTGTAAACTCTTTT
TGGCAAAAAAACTTGACTTGCAAATTTTCTTTGGCTTTGGGCTTATTTCT
TAGAATTTAGATAATTATTTGTCTTAGACTATAGCATAGTCTAGCGAAAA
TTGCGATTACCACCAAAATTGATTACCGCCAAAATTAGGAGCAGTATCTT
TGCTTGTAAAATACTGTCTCGTTTTAATGCCTTTGAAAAGCTTCACATAG
ATCTTCTGATGTTGAATGAATGAAATTGATTAAAACAATCACCTCTGAAC
AAAAGCAAAACTTTATTTTACACCAAAGATCATTTGATTAGATAAAATGA
AGAGTTTATAGTTTATAAGGTACAATTAGTAGTTCTATATATAGTACTTT
TCTTGCCAGTGAGCTATAAAGACGACATAATATCGAATCAACCGTGATAA
ATACCAGGTACCAATCAACAAAAGAATATTGTATTTTGTTTAAAAAAAAG
GGTTTAATTCCTTTTACTCGTGTCTAATTCCAGCAAAATCAAGTCAAAAA
AGTAACAGGACAGTATACCGGACACTAACCCAACGATTTTCAATAAAATT
TTATCGACTAGATCGTCCATTTCTTCTCCTAAGTTAAAGCTACGTTTTGA
TACTTGACATCATGCTCATCGCTCGATCTTCTAATCAACATGTATTCCAC
ACAGCTTAACAAACCTACCAAAAGAATGTAACCATAAGCTAAACCAGCAT
AAATCAAAGGTGATCCAATCGATTCTTTCAACTCGCTGTTAATAGCCATT
TCCATGACTGCAGGAATACCAATGGCTGTAACTTGTTGGTAGTTTCCCAT
TATCTGATTGATTAGTGCCATGTTAATCATTCCACTTGGACTCACACCTC
CACTACGACCCATTGTGGAATCGGTTGTATAATGACCACTATATCCTGGG
CTTCCATCGTCTCGACGTCGTCTTGAGTTTCCTCCGTCTATTCCGCCCGT
ACCGCCCATATCTCCTCCAACGAAACCACCCATAATGTTTGGATCACCTC
CGCCCGATTGGCGATATTTGAGAAAGCTTTTGACTTGATTGTAACTACTT
TTGAATTGGAATTTATTGTGTACAACATCGAGAGCGCATATGATAAAAAC
ACCTGAAGAAAAATAGAGATATTCTTGTCCACATAGGGTACTTTCACGTA
TCTTCTAGATCATTAAACTGTAGTATGTCAAAGAATTGACATATGATATC
ACGGCGAACCTCATATATTGAGTGAATTTTTGTCATGTTAAAGATTTAAA
TTTTTATTCTCAAAGCAATATTTTGTGACGAACATTCTTATTTCTGACCA
ATAAATTTTCTTACTAAGACCACTCTAAAATGAAAGCTTTCACCTATCTC
GTAACCAGACTTTTTTGGAACAGTATGAAATATACTTACTTGCGATGGTG
CAGCAAATTAAACTTCCAAAGATGAATTTTGTTGGATATTTGAAGGCTTT
CAAAAGAACAAAGATTAAGCCAATAACAACAAATAGTAATGCCAATGCCA
TACAGATATAAGCAGTTTTTAATGCTGAAAAGAAGTAAAGAATTTATCAA
TTCTGAGTAATCAGTACTAAGACAGACTAAGAAAATGCTTTGATTAACAG
CTTAAAATTTAGATTTTGAATAGTAATTATTCTAGACGAAATGTATTGGA
GACTTCTTTTTTTAACAAGGACTAAAGGCAGACAAACATTATATTTGGTC
TGTGATAATGCAGAATTGACGTTATATTACTCTCGTAGCTTAAAAGTTTT
ATTTTTATGCCTCAAATATTTTACAATTCATTCAACCTGATAGAATTGAA
AAACATCGACTGATTTTACTGACCTGAAGCTTCATCTTCAAGCATTTGTA
GAACCTCCACAAACGGCTTCACAGTGACACCATATTCCCATGGTTCGCCA
AAAATGTCGTTCTTAACACACCATGTCATCTCTGGGACAACCAGTTGGAC
TGGGTTTGACATTCCACTGGCAGTGATCGTCAAGCAGGTTTTTCGAAGAC
CGAAATGAGCCATTATATCGATCGTTGAGTCTTCAGGAAGCATACTAAAT
AGGTCCTGATTCTTAGTTACCGATGCTATTTTACCAGTGATGTTGGATGC
CATATCAAATAATGGACTCAAATGACCCATTTTCATTTTAAGTTCTTCAC
GCATCCAATCTTGTCTTGACACAGACATTGTGATGAGAACTCCAGTACTC
ACCAATGATATCAAGATACCATATCGCAATAATGTGAATGTTACAATGTT
AGAAGAACCCATCTTTCTGTGCCTTGAATTGTTGTTCTTTTGCTACCTGC
TTTTTCCTTTTTTCTCTGGTTTGGAGGAGAAAAAATAAAAAAACTACCTT
ATGGAGATTAATTTTCACGGGAACTTATTTTCGCGAGACAATTTTTTCGC
GAAATAATTTAATTTTCGCGGGAGTTATTTTCGCGAGCACAGAAAATGAA
AATTTTCGCAAGGATAAAATTTTGCAAAGCAGCCCTTTTTTGTCCGAATT
TCTTTATTTTTCCTAGGGGTTCAGGCAAAAACATGATTTTAAATTTTTCG
CAAGGATTATATTTTGCGAATTTCGCGAATACTAAGGTTTTTAAATTTTT
CGCGAGGATTAATTTTCGCGGAAATTCGCGAAATATGATCCCTCGCGAAA
ATTAATCCCCTTAAGGTATTATACCCAATTGATAGAAAAATTCTTTCATG
TTCATATCTTACCCCTCGATGGCCGAAAGCTTCCAACTTTATAAACACTG
TCTAGCAGAATATTTTGAAGTACTTTTTCTCAATACGAGGCCTCTACCTT
GCACCAGAGAACCATAGATTTGTCTCTGCTTGATCGACGTCAACTCATAT
TTCTTTTCTACAGATCATACTGCTCAGATTTAATATAGAGATAATATATA
TAGCGTACAAAACCACTGTACAAATACATTAACAATAAACTTTAAAAAAA
AAAATTCTTGTCTTACAGTACACGTTTTTTTATAAGAACAAACTATATAA
GAACATTAGGCTTCGATGGCCAAAATATTAAGAACAAGTTAAGAGCATTT
TAACTCCAGGGGAATAAGGCGGGTTCGTGGAGGTCAAAATTCTTGCAACG
TTACAAATCATTTTCAGAAGCTCGTTTTGGGCTCAAACGAAGCGTATAAC
TAATTAGAATAAGATTCAGTCTAGGCAGATGTTTTTTCATTTTGAAATTT
TGCGTAATTCGCAAAAACCCTCAATTTTGCGCTATTTTGATGACGTCATA
AAAATTGAAATTCAAATAACTTTTGATAGAAACATCAAAACAATTTCAAA
CTTTCACCAAAGATGCATATTATCAATTAAGTACAATTTACTAACTCATG
TTGATAATTAGATTACTTCCTTTTCTTCAATCTGTTTCCATTTAGTTTTT
CGATCTATGTCTGTCTCATGAAGTTAGTATAACAAAAAACCCTGCCCGAG
GTGTTTATAATCATCTTAGCTACTTCACATGGTGCTCGGTTGAGAACAGA
ATTTTTAAGGTTAAAAATTAGAAAACTTTTCAGTTTTTCGTCTACTTTTT
TAGTCATTTTTGCCATTTGCTAAGGTGGAAATAGGAAAAAATTTCAAATT
TTTGTTCTGAAGGTCATGTTGAGGGTTTTGGTCGGAGCATGGTCGCAATC
CTTGGGAAATTCTTTTATAGCATAGCGGAAAATTGATTTGATCTCTCGTT
GATTATAATTGTGGTTGAAATGGTAAGGTATATTTCATCATTGACGTCAG
TAACACCTTTCTTAAGAAAGATTTTTTCGACATATTCACTTTGAATTATT
GGTGAAATTTCTGCTAATACAAAAATGCTCAGCTATCAAAATTTCAAGGA
ATTCCTTCTGGAGTTACTGTAAATGTCTTTCCTTTCGAATGGATTTAGTC
GGAGACTAAAGGAAGGTTGATACAATATGTTACAATTTGTATTTTGATGA
TAATGTCGGTGAATTCAATGTTAAATTTCTGATTTAATCTTTTGCTTAAT
TTAAAAATCTATTTTATAAGGCGAGACCAATTTAATTTGTTGTTCTACAG
GCCCGACCAACCCAGCATTTGCTAAAATCAAAAAAATTGTAATATTGAAT
TTCGACTACAATATATTTTACACACTAGTTATTTGTAAGAATTAAATTTG
AATAAAGCTGAAAATTAATTCAAGAAATTGAAAAATTTAGAAAAATCACA
CATTCCATACACTAAAATTTTATAATGATCTTCATTGAAGATAAAAAAAG
TGAATTCTTGATCCAGATATTTTTTGGAAAATATTTTCGGTACCTTACCA
ACCCTGATAAATGAAAAAATTTATTCTTATTTTACCGACCGACCGACCCA
TACTTTTCTAAAGATCTGCCCGTAGAATAATAAATTAAATTGGTCTCGCC
TAACTGGTAAAAATAAATCATATATTGATCTGATAAATCATTATTGGTAG
TTGTGCATACTGAGGTTGTGGTTGGGGTCGTGGCAGTATCAATCATATTT
GTGGTGGTGGTAAAGCGCTAGGTTGTTCCTGGTGTTGATTTTGATGGTGG
CCAGGATTTTGATGGTGGCCAGGATTTTGATGGCATGAATTTTGGTGACA
TATGATAGACCTTTTCGGCTTTCCATCCGCCATCTTGAATTGTATGCAAA
AATAGAGGAACAAAAAAGCCGTGCTTGGATTTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071886-exon-scaffold_64-1575043694:302719..303113 | TCONS_00071886-exon-scaffold_64-1575043694:302719..303113 | Clytia hemisphaerica | exon |
| TCONS_00071886-exon-scaffold_64-1575043694:293729..293949 | TCONS_00071886-exon-scaffold_64-1575043694:293729..293949 | Clytia hemisphaerica | exon |
| TCONS_00071886-exon-scaffold_64-1510915933:302719..303113 | TCONS_00071886-exon-scaffold_64-1510915933:302719..303113 | Clytia hemisphaerica | exon |
| TCONS_00071886-exon-scaffold_64-1510915933:293729..293949 | TCONS_00071886-exon-scaffold_64-1510915933:293729..293949 | Clytia hemisphaerica | exon |
| TCONS_00071886-exon-scaffold_64-1491911889:302719..303113 | TCONS_00071886-exon-scaffold_64-1491911889:302719..303113 | Clytia hemisphaerica | exon |
| TCONS_00071886-exon-scaffold_64-1491911889:293729..293949 | TCONS_00071886-exon-scaffold_64-1491911889:293729..293949 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:293729..303113 - |
Blast
The following BLAST results are available for this feature:
|
