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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071479 ID=TCONS_00071479|Name=TCONS_00071479|organism=Clytia hemisphaerica|type=transcript|length=1708bp
gttaaACAACAAATTATGTCTGAGTTGGAAGAATTTTGCTCGAATGACTC
AAACGATGAAGTCTACGAAACAGAAGATGAGAAAAGAGTAGAGCAATATC
GGTGGTTTCATATCAATTGGGATATCTTACCTGCAAAAGTTTCTTATGTC
TTTGTTTGTGCGCGTCAAATAGGTTCGCTATCAAGTCTGATATTGTTTTT
GACTGGGATTGGTTTGGATAAAGTGGAAGCTGGCCTCATTCTTGGATTTC
GtctcACAGGAATGTTGGTGTCAGGACCATTTTGGGGAGTGATTGCAGAC
AACTTTCATTGTCATCGTTTGATCCTTATCATTAATTGTATTGGAATTAT
TTTGACAATGGGCTGCCAACCTTTGTTAGCCATCAAATATGGTAACCCTG
TTATCAACAAATGCCCTGAACCAACGTGGAGTCAATTCGTCAACAATCTC
AATCAAACCAATAATTCCACTTTTGATGGACAATCCATAAATCAAGATAA
CGGGCTGTACGGAACTCCATTTTTCGTCTTTTTCTTCACACAAATTTTGG
CAGCCTTTTTTGAAGGAACAAGCATGGCTTTTATAGACGTAGCAACGATC
AGAAAATCTCAACTCAGCAAACATCGAAAGATCGACTACGGCAGGCAACG
ACTGTGAGGCCCCATTGGAGCTATCATAGGTGTGAATATGACAAATTTGA
TCATCAAATATTTCCCGAAAGTAAACATCACATGTTATTCAGGGCTTTTC
TTGAACTACATAGCCTGTCATATTATGATGACGATTTCTGCGTTGTTTTT
ATATAGAGGGCTTTCATTCAAAGATGAAAACCACCAGCAACAAACTCtag
aagagaaaaaagaatcgaagaagAGTTTTcgcaaaatatttggcaaaagT
TTGATCCAGTTTGAAGTTCTGTTTGTGTATGTGCTATCGGCCGTTGGAGG
CGCTCTATTGGGTGCTTACCAATCATTTCTCTTTTTACATTTGAAAGAGA
TAGGCTCCACACAGACTGTAATGACATTATCAATCTCAATCGCAGCGGCT
GCTGGAAtcttcggatattttttttccgcaaaaattatCCGATTTTTCGG
CGGTCCGCTAAGATCAATATTCGTCTCATTGATCTTCTTTGGAGCGCGTT
GTCTTGGGTACGCACTGTCACCTAATGGCTGGATTCTGTTGATCTTTCAA
CCACTACATATCCTAAGTTATGCACTGTTTCTAACCTCTGGTATTCAATA
CATGAAAGAAACCAGTCCCTTAATTGTGATTACGAGCATGGTTTCCCTCT
TCCAAACAATGTTCGAAGGGGTTGGAGTTTTGGTTGGGTCAAGCATTGGA
GGtgtcattttcaaaaactatggtGGAAGAAAGCTGTAtctcatttttgc
atttttcgcCTTGTTTTGGACCATGATTTTGGGTGTTTATGTTTTCATGA
TCAAGAAAAAGAGggataataaaacaaaagaagacaATAACTAAATTGAC
CTTAACACACAGCTTAATGTGCTTAATAAGCAAATTCGATTGCGACTAAT
AATGGTAAAAAGGCAGATAAACTCTGGATATATTTTGGAAAGCAATACCT
TTTTTATGATTAGCATGATGGATGGTACCCTGTCTAAAGAAGAATAGATC
AATAAGTAACAAGTTTTTTTTACAGTATATATAAATacataacaaaataa
aaaataac Run BLAST on NCBI protein sequence of TCONS_00071479-protein >TCONS_00071479-protein ID=TCONS_00071479-protein|Name=TCONS_00071479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MTNLIIKYFPKVNITCYSGLFLNYIACHIMMTISALFLYRGLSFKDENHQ
QQTLEEKKESKKSFRKIFGKSLIQFEVLFVYVLSAVGGALLGAYQSFLFL
HLKEIGSTQTVMTLSISIAAAAGIFGYFFSAKIIRFFGGPLRSIFVSLIF
FGARCLGYALSPNGWILLIFQPLHILSYALFLTSGIQYMKETSPLIVITS
MVSLFQTMFEGVGVLVGSSIGGVIFKNYGGRKLYLIFAFFALFWTMILGV
YVFMIKKKRDNKTKEDNN Run BLAST on NCBI transcript from alignment at scaffold_60:1628355..1630419- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071479 ID=TCONS_00071479|Name=TCONS_00071479|organism=Clytia hemisphaerica|type=transcript|length=2065bp|location=Sequence derived from alignment at scaffold_60:1628355..1630419- (Clytia hemisphaerica)
GTTAAACAACAAATTATGTCTGAGTTGGAAGAATTTTGCTCGAATGACTC
AAACGATGAAGTCTACGAAACAGAAGATGAGAAAAGAGTAGAGCAATATC
GGTGGTTTCATATCAATTGGGATATCTTACCTGCAAAAGTTTCTTATGTC
TTTGTTTGTGCGCGTCAAATAGGTTCGCTATCAAGTCTGATATTGTTTTT
GACTGGGATTGGTTTGGATAAAGTGGAAGCTGGCCTCATTCTTGGATTTC
GGTGAGTAACAATAAAGTTAACCATTAGCTACCTAATAAAACCTAATGAA
AACGAAATTAAACTTATGCTCCAGGAGATGGGACAGTATCCAGTAGTAGT
AGGGGAAACATTTAGGATCCATAGCATCTATTTACTATCGAACAAATCAT
TTGTGTTGCGTCCCACGAAGGATGATACGAATTCTAAAGTTCGACTCCCT
ACTATATGAAGTATTCAAATAAATCGCAAAATGAATTAATTTTTGGTTGA
ATGAGAATGGATAAATGAATGACTAGAATCATTTGATTGAATTGATATAT
GATGAACCAGCTATCATTGCAAAAATCCATTTTCTTTTTTTTTTTTTTCA
AATTTTAGTCTCACAGGAATGTTGGTGTCAGGACCATTTTGGGGAGTGAT
TGCAGACAACTTTCATTGTCATCGTTTGATCCTTATCATTAATTGTATTG
GAATTATTTTGACAATGGGCTGCCAACCTTTGTTAGCCATCAAATATGGT
AACCCTGTTATCAACAAATGCCCTGAACCAACGTGGAGTCAATTCGTCAA
CAATCTCAATCAAACCAATAATTCCACTTTTGATGGACAATCCATAAATC
AAGATAACGGGCTGTACGGAACTCCATTTTTCGTCTTTTTCTTCACACAA
ATTTTGGCAGCCTTTTTTGAAGGAACAAGCATGGCTTTTATAGACGTAGC
AACGATCAGAAAATCTCAACTCAGCAAACATCGAAAGATCGACTACGGCA
GGCAACGACTGTGAGGCCCCATTGGAGCTATCATAGGTGTGAATATGACA
AATTTGATCATCAAATATTTCCCGAAAGTAAACATCACATGTTATTCAGG
GCTTTTCTTGAACTACATAGCCTGTCATATTATGATGACGATTTCTGCGT
TGTTTTTATATAGAGGGCTTTCATTCAAAGATGAAAACCACCAGCAACAA
ACTCTAGAAGAGAAAAAAGAATCGAAGAAGAGTTTTCGCAAAATATTTGG
CAAAAGTTTGATCCAGTTTGAAGTTCTGTTTGTGTATGTGCTATCGGCCG
TTGGAGGCGCTCTATTGGGTGCTTACCAATCATTTCTCTTTTTACATTTG
AAAGAGATAGGCTCCACACAGACTGTAATGACATTATCAATCTCAATCGC
AGCGGCTGCTGGAATCTTCGGATATTTTTTTTCCGCAAAAATTATCCGAT
TTTTCGGCGGTCCGCTAAGATCAATATTCGTCTCATTGATCTTCTTTGGA
GCGCGTTGTCTTGGGTACGCACTGTCACCTAATGGCTGGATTCTGTTGAT
CTTTCAACCACTACATATCCTAAGTTATGCACTGTTTCTAACCTCTGGTA
TTCAATACATGAAAGAAACCAGTCCCTTAATTGTGATTACGAGCATGGTT
TCCCTCTTCCAAACAATGTTCGAAGGGGTTGGAGTTTTGGTTGGGTCAAG
CATTGGAGGTGTCATTTTCAAAAACTATGGTGGAAGAAAGCTGTATCTCA
TTTTTGCATTTTTCGCCTTGTTTTGGACCATGATTTTGGGTGTTTATGTT
TTCATGATCAAGAAAAAGAGGGATAATAAAACAAAAGAAGACAATAACTA
AATTGACCTTAACACACAGCTTAATGTGCTTAATAAGCAAATTCGATTGC
GACTAATAATGGTAAAAAGGCAGATAAACTCTGGATATATTTTGGAAAGC
AATACCTTTTTTATGATTAGCATGATGGATGGTACCCTGTCTAAAGAAGA
ATAGATCAATAAGTAACAAGTTTTTTTTACAGTATATATAAATACATAAC
AAAATAAAAAATAAC Coding sequence (CDS) from alignment at scaffold_60:1628355..1630419- >TCONS_00071479 ID=TCONS_00071479|Name=TCONS_00071479|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_60:1628355..1630419- (Clytia hemisphaerica)
ATGACAAATTTGATCATCAAATATTTCCCGAAAGTAAACATCACATGTTA
TTCAGGGCTTTTCTTGAACTACATAGCCTGTCATATTATGATGACGATTT
CTGCGTTGTTTTTATATAGAGGGCTTTCATTCAAAGATGAAAACCACCAG
CAACAAACTCTAGAAGAGAAAAAAGAATCGAAGAAGAGTTTTCGCAAAAT
ATTTGGCAAAAGTTTGATCCAGTTTGAAGTTCTGTTTGTGTATGTGCTAT
CGGCCGTTGGAGGCGCTCTATTGGGTGCTTACCAATCATTTCTCTTTTTA
CATTTGAAAGAGATAGGCTCCACACAGACTGTAATGACATTATCAATCTC
AATCGCAGCGGCTGCTGGAATCTTCGGATATTTTTTTTCCGCAAAAATTA
TCCGATTTTTCGGCGGTCCGCTAAGATCAATATTCGTCTCATTGATCTTC
TTTGGAGCGCGTTGTCTTGGGTACGCACTGTCACCTAATGGCTGGATTCT
GTTGATCTTTCAACCACTACATATCCTAAGTTATGCACTGTTTCTAACCT
CTGGTATTCAATACATGAAAGAAACCAGTCCCTTAATTGTGATTACGAGC
ATGGTTTCCCTCTTCCAAACAATGTTCGAAGGGGTTGGAGTTTTGGTTGG
GTCAAGCATTGGAGGTGTCATTTTCAAAAACTATGGTGGAAGAAAGCTGT
ATCTCATTTTTGCATTTTTCGCCTTGTTTTGGACCATGATTTTGGGTGTT
TATGTTTTCATGATCAAGAAAAAGAGGGATAATAAAACAAAAGAAGACAA
TAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071479-exon-scaffold_60-1575043694:1630169..1630419 | TCONS_00071479-exon-scaffold_60-1575043694:1630169..1630419 | Clytia hemisphaerica | exon |
| TCONS_00071479-exon-scaffold_60-1575043694:1628355..1629811 | TCONS_00071479-exon-scaffold_60-1575043694:1628355..1629811 | Clytia hemisphaerica | exon |
| TCONS_00071479-exon-scaffold_60-1510915933:1630169..1630419 | TCONS_00071479-exon-scaffold_60-1510915933:1630169..1630419 | Clytia hemisphaerica | exon |
| TCONS_00071479-exon-scaffold_60-1510915933:1628355..1629811 | TCONS_00071479-exon-scaffold_60-1510915933:1628355..1629811 | Clytia hemisphaerica | exon |
| TCONS_00071479-exon-scaffold_60-1491911889:1630169..1630419 | TCONS_00071479-exon-scaffold_60-1491911889:1630169..1630419 | Clytia hemisphaerica | exon |
| TCONS_00071479-exon-scaffold_60-1491911889:1628355..1629811 | TCONS_00071479-exon-scaffold_60-1491911889:1628355..1629811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1628355..1630419 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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