TCONS_00071546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071546
Unique NameTCONS_00071546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071546 ID=TCONS_00071546|Name=TCONS_00071546|organism=Clytia hemisphaerica|type=transcript|length=378bp
gagaaagagagaaagAAAGAAGGAGAGAGAAATAACGAGAGAAAGAGCGA
GGGAGAGAGCCTATGAGAGTCAAGTTTCCGCAATTTTAGTGAGAATGAAA
CGATGCAAATGTTTTTTGAGGGTTTGTTTAGAAATCTTGCGGAAATCGCC
AATGTTAAGTTTTTTGTGTAGATTATTCCAATCTTTAGTTATCTGGGAAG
CTATGTTATAGGACCCATACTTTACCGTCTTTGTTTTCGGAGGTTCCAGT
TTGTGTTCTGATTGTCTTGTTCCTTCATGGACAGGAGAGTATCTAAGGAA
GTCAGCAAAATATGTAGGTAGTTTACCATGTAAAAAATCAAAGGCAAATA
GACAGTTCTTCACCTGGAGTTGTTTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_60:1249840..1250217

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071546 ID=TCONS_00071546|Name=TCONS_00071546|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_60:1249840..1250217 (Clytia hemisphaerica)
AAGAAACAACTCCAGGTGAAGAACTGTCTATTTGCCTTTGATTTTTTACA
TGGTAAACTACCTACATATTTTGCTGACTTCCTTAGATACTCTCCTGTCC
ATGAAGGAACAAGACAATCAGAACACAAACTGGAACCTCCGAAAACAAAG
ACGGTAAAGTATGGGTCCTATAACATAGCTTCCCAGATAACTAAAGATTG
GAATAATCTACACAAAAAACTTAACATTGGCGATTTCCGCAAGATTTCTA
AACAAACCCTCAAAAAACATTTGCATCGTTTCATTCTCACTAAAATTGCG
GAAACTTGACTCTCATAGGCTCTCTCCCTCGCTCTTTCTCTCGTTATTTC
TCTCTCCTTCTTTctttctctctttctc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044447XLOC_044447Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071546-exon-scaffold_60-1491911889:1249840..1250217TCONS_00071546-exon-scaffold_60-1491911889:1249840..1250217Clytia hemisphaericaexon
TCONS_00071546-exon-scaffold_60-1510915933:1249840..1250217TCONS_00071546-exon-scaffold_60-1510915933:1249840..1250217Clytia hemisphaericaexon
TCONS_00071546-exon-scaffold_60-1575043694:1249840..1250217TCONS_00071546-exon-scaffold_60-1575043694:1249840..1250217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1249840..1250217 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.972982	0.445214	2.39595	0.639466	1.69725	1.76667	0.800354	0.302736	0.90091	0.50568	3.25271	1.49217	1.81997	0.222802	0.712639	0.441776	0.223158	0.598207	0.967929	0	0.464926	0	1.4413	1.19011	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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