TCONS_00071299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071299
Unique NameTCONS_00071299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071299 ID=TCONS_00071299|Name=TCONS_00071299|organism=Clytia hemisphaerica|type=transcript|length=150bp
AGACCCGAGAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGAC
AATGTattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTGAC
GCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCACTGCCACGAC
Run BLAST on NCBI

transcript from alignment at scaffold_60:1241616..1242661+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071299 ID=TCONS_00071299|Name=TCONS_00071299|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at scaffold_60:1241616..1242661+ (Clytia hemisphaerica)
AGACCCGAGAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGAC
AATGTattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTGAC
GCAAGATTTGACGTATCAAAACATTGCCCTGAAACTTGCGCTGCCACAGC
AGGTGAGTATTCAATTTTGATAAACAgcgattagtatatgtaatcacatg
ataacgagtgcaattcgaatataattgcaccagtgatttttttgttatta
atttttcgagtccgaaaggacaaggaaaattcgaaacaaaaaaatcacga
gtgcaattttcgaattgtacaaATTGTACAAACAATTGTAAAGAAGTTTA
ATGCAAAGATTGTCCTTACATTGTAGACCAAACAAAAGACAACAATGAAC
tagcagaaaaagtttgcaAAGGACAATGTattcatttgaaaagaaattgt
ggTCAAATGCTTGGATGTGGTAACGCAAAATTTGACGTATCAAAACATTG
CCCTGAAACTTGCACTGCCACAGCTGGTGagtatttcatttttgaaaaag
gcgaaTCTCATGAGCATCGACAACTTATACTAAAGTTATCGAAGAATTGT
AAAGAAGTTTAATGCAAAGATTGTCCTTACATTGTAGACCCAACAAAAGA
CAACAATGAACTAGCAAACAAAGTTTGCAAAGGACTATGTATTCATTTGA
AAAGACATTGTGGTCAAATGCTTGGATGTGGTGACGCAAGATTTGACGTA
TCAAAACATTGCCCTGAAACTTGCGCTGCCACGGCTGGTGagtatttcat
ttttgaaaaaggcaaATCTCATGAGCATCGACAACTTATACTAAAGTTAT
CAAAGAATTGTAAAGGAGTTTAATGCAAAGATTTTCCTTACATTGTAGAC
CCAACAAAAGACAACAATGAACtagcagaaaaagtttgcaAAGGACAATG
TattcatttgaaaagaaattgtggTCAAATGCTTGGATGTGGTGATGCAA
GATTTGACGTATCAAAACATTGCCCTGAAACTTGCACTGCCACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044309XLOC_044309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071299-exon-scaffold_60-1491911889:1241616..1241737TCONS_00071299-exon-scaffold_60-1491911889:1241616..1241737Clytia hemisphaericaexon
TCONS_00071299-exon-scaffold_60-1510915933:1241616..1241737TCONS_00071299-exon-scaffold_60-1510915933:1241616..1241737Clytia hemisphaericaexon
TCONS_00071299-exon-scaffold_60-1575043694:1241616..1241737TCONS_00071299-exon-scaffold_60-1575043694:1241616..1241737Clytia hemisphaericaexon
TCONS_00071299-exon-scaffold_60-1491911889:1242634..1242661TCONS_00071299-exon-scaffold_60-1491911889:1242634..1242661Clytia hemisphaericaexon
TCONS_00071299-exon-scaffold_60-1510915933:1242634..1242661TCONS_00071299-exon-scaffold_60-1510915933:1242634..1242661Clytia hemisphaericaexon
TCONS_00071299-exon-scaffold_60-1575043694:1242634..1242661TCONS_00071299-exon-scaffold_60-1575043694:1242634..1242661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1241616..1242661 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top