TCONS_00071544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071544
Unique NameTCONS_00071544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1055

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071544 ID=TCONS_00071544|Name=TCONS_00071544|organism=Clytia hemisphaerica|type=transcript|length=1055bp
TTGGTAGAATGCTTTCCTAAATGGAAACATGGTACAATTATTATAGGAGA
CGTCAACTAAACAAAAAAGTTCACATTCTCTTTTTTTcattatacaaaaa
aataaatcagcaaaaactaaaaaacactacaaagtttctaaattaTATTC
ACGAACGTATTTCAAAATTTGGTCTGCTTCTTTAAGTTCAACATGTAAAA
AATATCTATTCCCTTTAGCTTCAAAAGTGGAAAAAGCATGCTCAATCTCT
GGTATAGTAATATCTTCAACAGAAAACCTATGACGTTTGGTGGTTCCAAA
AATGGTGGAAGTTTCAGCGGCAAAGGTTCTTGTTTCTGGGTGGAAAAACA
TACGATAAACATATACTCTGGTCAACCAATGTAACAGACTGGTTGTTGTT
ACTCCCATAACAACCACGGTTGATGCTAGAATCGCTTTCGCAATAGTTGC
CAAGGTAGAAGCACTCATGAAAATAACAGCTGGTGCTGAAAGAGATACTG
TTGCAGTTgtaaatgaaaataactttagAAATTTAATTCTCTTGGATAAT
GGTCCTTCATATATAAGTCTGAAATCTTCATCTTTGACAGGTAGTGTACC
TGAAGAGCAATGTTTAGAACAACTTGTACTAAACAATATTTTTGAGACAT
TCCTTTGAGATATCTGTGGTAATCTACTATGCAGTAATGGCGTCTGTGTA
TTTGTTGAAATTCTGCAGAGATGTGTAAGTTGTGTACACGATGCTTTGGA
GACAAGTCTTTGTAATaaagacattttttattttatggaTCTAAAATATT
AGTAAACAGATGAAGAAAACTGGTGTTCAAcgaactttaaaacaaaattc
cCAAAAAGGCTTTCGAAAAAGGAAAACACTGTATAACTTAAGGCATGCAC
TCTTAGATTCCAAATAAATGGGCtccctgcttgttaatttttcgaaaatt
ttccaccccccAGACCTTAGTAtgaccccccggaccttattaggacccca
ggaccttattaggacccccgtttattaatttttaagaatattttcagttg
tcaaA
Run BLAST on NCBI

protein sequence of TCONS_00071544-protein

>TCONS_00071544-protein ID=TCONS_00071544-protein|Name=TCONS_00071544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MSLLQRLVSKASCTQLTHLCRISTNTQTPLLHSRLPQISQRNVSKILFST
SCSKHCSSGTLPVKDEDFRLIYEGPLSKRIKFLKLFSFTTATVSLSAPAV
IFMSASTLATIAKAILASTVVVMGVTTTSLLHWLTRVYVYRMFFHPETRT
FAAETSTIFGTTKRHRFSVEDITIPEIEHAFSTFEAKGNRYFLHVELKEA
DQILKYVREYNLETL
Run BLAST on NCBI

transcript from alignment at scaffold_60:1163984..1165038

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071544 ID=TCONS_00071544|Name=TCONS_00071544|organism=Clytia hemisphaerica|type=transcript|length=1055bp|location=Sequence derived from alignment at scaffold_60:1163984..1165038 (Clytia hemisphaerica)
Tttgacaactgaaaatattcttaaaaattaataaacgggggtcctaataa ggtcctggggtcctaataaggtccggggggtcaTACTAAGGTCTgggggg tggaaaattttcgaaaaattaacaagcagggaGCCCATTTATTTGGAATC TAAGAGTGCATGCCTTAAGTTATACAGTGTTTTCCTTTTTCGAAAGCCTT TTTGggaattttgttttaaagttcgTTGAACACCAGTTTTCTTCATCTGT TTACTAATATTTTAGAtccataaaataaaaaatgtctttATTACAAAGAC TTGTCTCCAAAGCATCGTGTACACAACTTACACATCTCTGCAGAATTTCA ACAAATACACAGACGCCATTACTGCATAGTAGATTACCACAGATATCTCA AAGGAATGTCTCAAAAATATTGTTTAGTACAAGTTGTTCTAAACATTGCT CTTCAGGTACACTACCTGTCAAAGATGAAGATTTCAGACTTATATATGAA GGACCATTATCCAAGAGAATTAAATTTctaaagttattttcatttacAAC TGCAACAGTATCTCTTTCAGCACCAGCTGTTATTTTCATGAGTGCTTCTA CCTTGGCAACTATTGCGAAAGCGATTCTAGCATCAACCGTGGTTGTTATG GGAGTAACAACAACCAGTCTGTTACATTGGTTGACCAGAGTATATGTTTA TCGTATGTTTTTCCACCCAGAAACAAGAACCTTTGCCGCTGAAACTTCCA CCATTTTTGGAACCACCAAACGTCATAGGTTTTCTGTTGAAGATATTACT ATACCAGAGATTGAGCATGCTTTTTCCACTTTTGAAGCTAAAGGGAATAG ATATTTTTTACATGTTGAACTTAAAGAAGCAGACCAAATTTTGAAATACG TTCGTGAATAtaatttagaaactttgtagtgttttttagtttttgctgat ttatttttttgtataatgAAAAAAAGAGAATGTGAACTTTTTTGTTTAGT TGACGTCTCCTATAATAATTGTACCATGTTTCCATTTAGGAAAGCATTCT ACCAA

Coding sequence (CDS) from alignment at scaffold_60:1163984..1165038

>TCONS_00071544 ID=TCONS_00071544|Name=TCONS_00071544|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_60:1163984..1165038 (Clytia hemisphaerica)
atgtctttATTACAAAGACTTGTCTCCAAAGCATCGTGTACACAACTTAC
ACATCTCTGCAGAATTTCAACAAATACACAGACGCCATTACTGCATAGTA
GATTACCACAGATATCTCAAAGGAATGTCTCAAAAATATTGTTTAGTACA
AGTTGTTCTAAACATTGCTCTTCAGGTACACTACCTGTCAAAGATGAAGA
TTTCAGACTTATATATGAAGGACCATTATCCAAGAGAATTAAATTTctaa
agttattttcatttacAACTGCAACAGTATCTCTTTCAGCACCAGCTGTT
ATTTTCATGAGTGCTTCTACCTTGGCAACTATTGCGAAAGCGATTCTAGC
ATCAACCGTGGTTGTTATGGGAGTAACAACAACCAGTCTGTTACATTGGT
TGACCAGAGTATATGTTTATCGTATGTTTTTCCACCCAGAAACAAGAACC
TTTGCCGCTGAAACTTCCACCATTTTTGGAACCACCAAACGTCATAGGTT
TTCTGTTGAAGATATTACTATACCAGAGATTGAGCATGCTTTTTCCACTT
TTGAAGCTAAAGGGAATAGATATTTTTTACATGTTGAACTTAAAGAAGCA
GACCAAATTTTGAAATACGTTCGTGAATAtaatttagaaactttgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044445XLOC_044445Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071544-proteinTCONS_00071544-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071544-exon-scaffold_60-1491911889:1163984..1165038TCONS_00071544-exon-scaffold_60-1491911889:1163984..1165038Clytia hemisphaericaexon
TCONS_00071544-exon-scaffold_60-1510915933:1163984..1165038TCONS_00071544-exon-scaffold_60-1510915933:1163984..1165038Clytia hemisphaericaexon
TCONS_00071544-exon-scaffold_60-1575043694:1163984..1165038TCONS_00071544-exon-scaffold_60-1575043694:1163984..1165038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1163984..1165038 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
111.203 116.381 32.6124 23.2525 15.5647 11.4247 14.5032 12.972 12.4038 10.3741 7.47765 6.94354 4.8529 3.79432 5.8817 6.10753 12.561 12.0679 4.27956 3.26539 10.2026 7.86639 51.9444 42.9585 6.88436 9.9282 6.91352 6.72341 20.8382 23.3793
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009724TMEM70
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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