TCONS_00071280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071280
Unique NameTCONS_00071280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071280 ID=TCONS_00071280|Name=TCONS_00071280|organism=Clytia hemisphaerica|type=transcript|length=794bp
TTCAGatcaatatataaaaaatatctaCGGTGGtgtaaaatataaacaaa
ccaaaaatgaaagtgatacGAGAATCGTACGATCTCAAAAACATtagtaa
aaaaatcacaatattttttacaaaaagggcaaagagaaaatttcaaatta
tttctgatGGACCTTCACGACCTTCAAGGCTATTCAAAATTATTGCTACC
CAAAGtcTTGCTGATGCAAAGTCACTGTTAAACAACAAAGCAGACCATAC
CATCAAAAGTAACTGAAGCAATAGAAAGAATTTCAAAGAAGCATCAAAAT
GAAGAAGGATACAGTTGTCAACCTGAAGGATGATAAAAAGCACAAACGAA
GACATATCTTGCGTGAACTGAAAAAAGTATTGATTAATTTCTATGATTCT
GCAAAAACTATCCATGTGACAATTTATGATAATTTGAGCAGCTATATTTC
AAGCAGCTTCGGCTATGCACCAGGACGTGGAAACTTTCCaagaaatgaaa
atcttttatggaaataaacaaaaatacattCCCAGATCCCATCCAGATTT
GGAGTACTTAAATTTTAACCTGGATTGGTCTGTACAGTACTCTCTTACTT
TGACACCCTGAATCCACACATACTTTATCTTTTGTATCATatattttcat
gtaaaaaaagattttatataTAGTTTTAATggattatttttgtacaaaga
ttttacgttttttttagTAGCAGAGTTATTTCTacctcaaaatttcattt
tcgatttaatATTGTTTATTCAAAGTTGAATTGTGTGACAATTA
Run BLAST on NCBI

transcript from alignment at scaffold_60:983903..985112+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071280 ID=TCONS_00071280|Name=TCONS_00071280|organism=Clytia hemisphaerica|type=transcript|length=1210bp|location=Sequence derived from alignment at scaffold_60:983903..985112+ (Clytia hemisphaerica)
TTCAGatcaatatataaaaaatatctaCGGTGGtgtaaaatataaacaaa ccaaaaatgaaagtgatacGAGAATCGTACGATCTCAAAAACATtagtaa aaaaatcacaatattttttacaaaaagggcaaagagaaaatttcaaatta tttctgatGGACCTTCACGACCTTCAAGGCTATTCAAAATTATTGCTACC CAAAGGTAAGATGATATTTCTTTGGTGATATTGGAGCTCTATTTACAAAA GCGAGTCACGGTGTCTTTCTCTATGTCTCTACTTTGACATTTcattataa aatcaaaacatcctAATCTCATGCTGGCTTGACTATTATgtgttttgttt tattgtctGTCCTTATAATTGTCAtgttatctcaaaatcattttatcAAT CTACCGTGTCATAACATAAGTCATGTGTTAAAAGGTTTCTTGTATTATGT TTGTTACTGCAAAGTGGTTCTCTCTAAATTTAGTGTGGAATAGCTAGTAT AACACATGAAAGGCTCATTTTTTAATCACTGGATTCTGGAAACAATAATT TTATTGAGAAAATCTTGAACACTTTATAAGTAAATTTGAGGTAATAACTT CgtctatttttgaatttttagtcTTGCTGATGCAAAGTCACTGTTAAACA ACAAAGCAGACCATACCATCAAAAGTAACTGAAGCAATAGAAAGAATTTC AAAGAAGCATCAAAATGAAGAAGGATACAGTTGTCAACCTGAAGGATGAT AAAAAGCACAAACGAAGACATATCTTGCGTGAACTGAAAAAAGTATTGAT TAATTTCTATGATTCTGCAAAAACTATCCATGTGACAATTTATGATAATT TGAGCAGCTATATTTCAAGCAGCTTCGGCTATGCACCAGGACGTGGAAAC TTTCCaagaaatgaaaatcttttatggaaataaacaaaaatacattCCCA GATCCCATCCAGATTTGGAGTACTTAAATTTTAACCTGGATTGGTCTGTA CAGTACTCTCTTACTTTGACACCCTGAATCCACACATACTTTATCTTTTG TATCATatattttcatgtaaaaaaagattttatataTAGTTTTAATggat tatttttgtacaaagattttacgttttttttagTAGCAGAGTTATTTCTa cctcaaaatttcattttcgatttaatATTGTTTATTCAAAGTTGAATTGT GTGACAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044300XLOC_044300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071280-exon-scaffold_60-1491911889:983903..984107TCONS_00071280-exon-scaffold_60-1491911889:983903..984107Clytia hemisphaericaexon
TCONS_00071280-exon-scaffold_60-1510915933:983903..984107TCONS_00071280-exon-scaffold_60-1510915933:983903..984107Clytia hemisphaericaexon
TCONS_00071280-exon-scaffold_60-1575043694:983903..984107TCONS_00071280-exon-scaffold_60-1575043694:983903..984107Clytia hemisphaericaexon
TCONS_00071280-exon-scaffold_60-1491911889:984524..985112TCONS_00071280-exon-scaffold_60-1491911889:984524..985112Clytia hemisphaericaexon
TCONS_00071280-exon-scaffold_60-1510915933:984524..985112TCONS_00071280-exon-scaffold_60-1510915933:984524..985112Clytia hemisphaericaexon
TCONS_00071280-exon-scaffold_60-1575043694:984524..985112TCONS_00071280-exon-scaffold_60-1575043694:984524..985112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:983903..985112 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4555 1.24192 0.755328 0.738971 17.5018 14.5411 34.5405 37.373 42.366 25.0675 43.2553 19.6294 8.63138 7.53962 12.5349 14.7084 12.0645 14.4189 18.9535 22.0597 41.6314 39.9834 17.3143 19.471 23.4405 30.4504 2.74419 2.39619 1.21162 1.50877
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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