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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071519 ID=TCONS_00071519|Name=TCONS_00071519|organism=Clytia hemisphaerica|type=transcript|length=905bp
GTTTCGTTGACAGCACAGCAAAGATTGAGGATATATCTAGAATATAGCAA
GCGGATCATTTTtcgttataatttgaaaaaacaattttataaaattactc
ctattcataaattagaaataaatcaaaagtaattcaaaaataaatcaaaa
ataaatcttaaatcaaaaataaatcataaataaatcataaatcaaaaata
aatcacaaataaatcataaaccaaaaataaatcagaaataaataaaaatc
aaaaataaaccataaatctcgtacaccatttttcgagtgatttgcccctc
gttGCAAAGtacacattttcttttttccactTTTACAAAACACACGTTGC
AAAGAACCATTCTTTTACAACAGGTCGACAAGATTATTGGGAATCTGTCC
AAACACACTACACAATGTTCATTTTTCAGTGCTGTTAAAACAATGTCATC
TTCTTTAAGTTCTCCTCCTTCTTCCTCATCtcgttgttgttgtggttgtt
gttgttgtggttgtggtggtgatggtggtggtggtggtggcggTGCTATC
GTGGGTGGAACACCAAAACCATTATAGCCTTCGGGAATTACTAGTGGTGG
AAAGTGGTCCCAGAGAGCCATACTGCAAATTTATCTTCTTTCCTCATTGA
TGATGAGTTGATCGGCATAATTTTCTATCAGTCTGTTCAGCATtcagaaa
tttttctctttgacggatatcatttttgtcaatcgaatgaaATGCAAACA
CGATAGCATAATATAATcgttttatttctttatttctatAAAATCTAAAG
AAGAACATCTTCCCACTTATTTTGTGATGAATCAATCCCTTCTCCAATCG
TTACATTTATAAGTTTATCAGTTACAGAATTTAATTCCTTTTCAAAACTT
gtgtc Run BLAST on NCBI protein sequence of TCONS_00071519-protein >TCONS_00071519-protein ID=TCONS_00071519-protein|Name=TCONS_00071519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MALWDHFPPLVIPEGYNGFGVPPTIAPPPPPPPSPPQPQQQQPQQQRDEE
EGGELKEDDIVLTALKNEHCVVCLDRFPIILSTCCKRMVLCNVCFVKVEK
RKCVLCNEGQITRKMVYEIYGLFLIFIYF Run BLAST on NCBI transcript from alignment at scaffold_60:714412..715316 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071519 ID=TCONS_00071519|Name=TCONS_00071519|organism=Clytia hemisphaerica|type=transcript|length=905bp|location=Sequence derived from alignment at scaffold_60:714412..715316 (Clytia hemisphaerica)
gacacAAGTTTTGAAAAGGAATTAAATTCTGTAACTGATAAACTTATAAA
TGTAACGATTGGAGAAGGGATTGATTCATCACAAAATAAGTGGGAAGATG
TTCTTCTTTAGATTTTatagaaataaagaaataaaacgATTATATTATGC
TATCGTGTTTGCATttcattcgattgacaaaaatgatatccgtcaaagag
aaaaatttctgaATGCTGAACAGACTGATAGAAAATTATGCCGATCAACT
CATCATCAATGAGGAAAGAAGATAAATTTGCAGTATGGCTCTCTGGGACC
ACTTTCCACCACTAGTAATTCCCGAAGGCTATAATGGTTTTGGTGTTCCA
CCCACGATAGCAccgccaccaccaccaccaccatcaccaccacaaccaca
acaacaacaaccacaacaacaacgaGATGAGGAAGAAGGAGGAGAACTTA
AAGAAGATGACATTGTTTTAACAGCACTGAAAAATGAACATTGTGTAGTG
TGTTTGGACAGATTCCCAATAATCTTGTCGACCTGTTGTAAAAGAATGGT
TCTTTGCAACGTGTGTTTTGTAAAagtggaaaaaagaaaatgtgtaCTTT
GCaacgaggggcaaatcactcgaaaaatggtgtacgagatttatggttta
tttttgatttttatttatttctgatttatttttggtttatgatttatttg
tgatttatttttgatttatgatttatttatgatttatttttgatttaaga
tttatttttgatttatttttgaattacttttgatttatttctaatttatg
aataggagtaattttataaaattgttttttcaaattataacgaAAAATGA
TCCGCTTGCTATATTCTAGATATATCCTCAATCTTTGCTGTGCTGTCAAC
GAAAC Coding sequence (CDS) from alignment at scaffold_60:714412..715316 >TCONS_00071519 ID=TCONS_00071519|Name=TCONS_00071519|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_60:714412..715316 (Clytia hemisphaerica)
ATGGCTCTCTGGGACCACTTTCCACCACTAGTAATTCCCGAAGGCTATAA
TGGTTTTGGTGTTCCACCCACGATAGCAccgccaccaccaccaccaccat
caccaccacaaccacaacaacaacaaccacaacaacaacgaGATGAGGAA
GAAGGAGGAGAACTTAAAGAAGATGACATTGTTTTAACAGCACTGAAAAA
TGAACATTGTGTAGTGTGTTTGGACAGATTCCCAATAATCTTGTCGACCT
GTTGTAAAAGAATGGTTCTTTGCAACGTGTGTTTTGTAAAagtggaaaaa
agaaaatgtgtaCTTTGCaacgaggggcaaatcactcgaaaaatggtgta
cgagatttatggtttatttttgatttttatttatttctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071519-exon-scaffold_60-1491911889:714412..715316 | TCONS_00071519-exon-scaffold_60-1491911889:714412..715316 | Clytia hemisphaerica | exon |
| TCONS_00071519-exon-scaffold_60-1510915933:714412..715316 | TCONS_00071519-exon-scaffold_60-1510915933:714412..715316 | Clytia hemisphaerica | exon |
| TCONS_00071519-exon-scaffold_60-1575043694:714412..715316 | TCONS_00071519-exon-scaffold_60-1575043694:714412..715316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:714412..715316 . |
Blast
The following BLAST results are available for this feature:
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