TCONS_00071332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071332
Unique NameTCONS_00071332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071332 ID=TCONS_00071332|Name=TCONS_00071332|organism=Clytia hemisphaerica|type=transcript|length=1406bp
GTTGAAGTTGTAGGAGTAACAAATAAGAACGGTATCCCGACAAGTCAAAC
ATTCAAAGCAGATGCAGTGTTGTGTACATTACCTTTGGGTGtattgaaac
ataaaaatcCACCCTCTATACATTTCAATCCTCCGCTTCCTGATTGGAAA
ACTGGCGCCATGGATCGAATGGGATTCGGAAATCTTAATAAGGTGATTTT
ATGCTTCGACCGTGTCTTTTGGAATTCAAGCACTAATCTCTTTGGCCACG
TGGCCTCGACCACATCAAATCGTGGTGAACTCTTCTTATTCTGGAGTATC
TACAAAGCGCCCGTTCTTTTGGCGTTAGTGGCGGGTGAGGCGGCAAACAA
ATTGGAAACCTATTCCGATGACGTTATCATTGGGAGAGCCTTGACCGTgc
tcaaaggaattttcggaaGTAATAATGTTCCTCAGGTATGTTACAGATAT
GATTTATCAATTTGAAGCCTCCAACTATGAAGCCTAGCTATTCCTAACTT
AAATGATTCATTNAGTGCTCAAAGGAATCTTCGGAAGTAATAATGTTCCT
CAGCCAAAAGAGACGATTGTTACGCGATGGAAATCCGACGAATGGTCACG
TGGCTCTTATTCTTTTGTTGCTGCTGGTTCCTCTGGCAACGATTATGACA
TCATGGCCGCCCCTGTAGTACCGCCCCCACCACCAGAGAAGCCTGTCATT
CCGGGTAGTAATATTCCGAGATTATTTTTCGCCGGTGAGCATACTATACG
GAACTATCCAGCAACGGTACACGGAGCTTTATTGAGTGGTTTAAGAGAAG
CAGGTCGAATTGCAGATCAGTTTCTTGGTCTACCTTACGATTTGAATAAG
TTCACTTAAGTGAATTGAGCTCcgtatttctttttgttttgatttgatgg
gCGAATTATAAACTTGAAAGATGAACCCTGTTTGTTGGGGTACTACTTTT
CATCACGTGCTGATGAAACCTATGTTTGGAGCTTCTGGAATCGAGCTATC
ATCTTCACAGCTTCGTGAAAATCGAGGTTTCTTTTGTGGTTACGctataa
aaaaacatacctCAAGTCTGATGTTAGAAATGCTGATTTTTGTACAGTGT
GTGGTGTAAATATTCCTTGTCGAGGTACTGGCTCAAAATGAATTCATACA
TAACTTGCTTTCCTCGTTAATAATTGTGTTGGTTTGTCGGATTGAAGTTA
AACTATTTTAAAGAATAAACATGTAATTGGCTGAAAAGATTGCCGAaatg
tatacacgtttttttatttaagaacaaactatataagaacataaggcttc
gatggccaaaatgttaagaacattttaaagcaggctgatttcttaggaaa
atggacgaaaatactcaaaaaatggcaaaaataagaacattttcataaca
tttttt
Run BLAST on NCBI

transcript from alignment at scaffold_60:169275..171116-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071332 ID=TCONS_00071332|Name=TCONS_00071332|organism=Clytia hemisphaerica|type=transcript|length=1842bp|location=Sequence derived from alignment at scaffold_60:169275..171116- (Clytia hemisphaerica)
GTTGAAGTTGTAGGAGTAACAAATAAGAACGGTATCCCGACAAGTCAAAC
ATTCAAAGCAGATGCAGTGTTGTGTACATTACCTTTGGGTGTATTGAAAC
ATAAAAATCCACCCTCTATACATTTCAATCCTCCGCTTCCTGATTGGAAA
ACTGGCGCCATGGATCGAATGGGATTCGGAAATCTTAATAAGGTTTGTTA
TTTCGGAATTTTAATTTCTAGTCGTTCTTATGGCCAAAGATCAACAAAAC
ATCAAAAGAAAGCTAGAAACTGTACGACTGTCAAAAAATAACTTAAATAT
CATGACACCTTATGGTTCATATTTTGGTTTTGCATGAGAGAATTTCTTAA
AATACGAGTTTTCTATTTTCAGGTGATTTTATGCTTCGACCGTGTCTTTT
GGAATTCAAGCACTAATCTCTTTGGCCACGTGGCCTCGACCACATCAAAT
CGTGGTGAACTCTTCTTATTCTGGAGTATCTACAAAGCGCCCGTTCTTTT
GGCGTTAGTGGCGGGTGAGGCGGCAAACAAATTGGAAACCTATTCCGATG
ACGTTATCATTGGGAGAGCCTTGACCGTGCTCAAAGGAATTTTCGGAAGT
AATAATGTTCCTCAGGTATGTTACAGATATGATTTATCAATTTGAAGCCT
CCAACTATGAAGCCTAGCTATTCCTAACTTAAATGATTCATTNAGTGCTC
AAAGGAATCTTCGGAAGTAATAATGTTCCTCAGGTATGTTATAGATATGA
TTTATCAATTTGAAGCCTCCAACTATGAAGCCTAGCTATTCCTAACTTAA
ATGATTCATTCTACGCCTCTGATTTCCTCTAAGTCTTATACATGACAAAC
GAAAAAGCCTTAAAGTTGTTTACTTTCATTCTATATGTCTTGACAAGCAT
AGAGTGAAAGTGAACAATGTTAAGGCTTTTTCTTTCTAGAGCTGTCTAGA
GACGATGTCTTTTCTTTTAAATTTAACATCTTTTTTTAGCCAAAAGAGAC
GATTGTTACGCGATGGAAATCCGACGAATGGTCACGTGGCTCTTATTCTT
TTGTTGCTGCTGGTTCCTCTGGCAACGATTATGACATCATGGCCGCCCCT
GTAGTACCGCCCCCACCACCAGAGAAGCCTGTCATTCCGGGTAGTAATAT
TCCGAGATTATTTTTCGCCGGTGAGCATACTATACGGAACTATCCAGCAA
CGGTACACGGAGCTTTATTGAGTGGTTTAAGAGAAGCAGGTCGAATTGCA
GATCAGTTTCTTGGTCTACCTTACGATTTGAATAAGTTCACTTAAGTGAA
TTGAGCTCCGTATTTCTTTTTGTTTTGATTTGATGGGCGAATTATAAACT
TGAAAGATGAACCCTGTTTGTTGGGGTACTACTTTTCATCACGTGCTGAT
GAAACCTATGTTTGGAGCTTCTGGAATCGAGCTATCATCTTCACAGCTTC
GTGAAAATCGAGGTTTCTTTTGTGGTTACGCTATAAAAAAACATACCTCA
AGTCTGATGTTAGAAATGCTGATTTTTGTACAGTGTGTGGTGTAAATATT
CCTTGTCGAGGTACTGGCTCAAAATGAATTCATACATAACTTGCTTTCCT
CGTTAATAATTGTGTTGGTTTGTCGGATTGAAGTTAAACTATTTTAAAGA
ATAAACATGTAATTGGCTGAAAAGATTGCCGAAATGTATACACGTTTTTT
TATTTAAGAACAAACTATATAAGAACATAAGGCTTCGATGGCCAAAATGT
TAAGAACATTTTAAAGCAGGCTGATTTCTTAGGAAAATGGACGAAAATAC
TCAAAAAATGGCAAAAATAAGAACATTTTCATAACATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044329XLOC_044329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071332-exon-scaffold_60-1575043694:170925..171116TCONS_00071332-exon-scaffold_60-1575043694:170925..171116Clytia hemisphaericaexon
TCONS_00071332-exon-scaffold_60-1575043694:170384..170744TCONS_00071332-exon-scaffold_60-1575043694:170384..170744Clytia hemisphaericaexon
TCONS_00071332-exon-scaffold_60-1575043694:169275..170127TCONS_00071332-exon-scaffold_60-1575043694:169275..170127Clytia hemisphaericaexon
TCONS_00071332-exon-scaffold_60-1510915933:170925..171116TCONS_00071332-exon-scaffold_60-1510915933:170925..171116Clytia hemisphaericaexon
TCONS_00071332-exon-scaffold_60-1510915933:170384..170744TCONS_00071332-exon-scaffold_60-1510915933:170384..170744Clytia hemisphaericaexon
TCONS_00071332-exon-scaffold_60-1510915933:169275..170127TCONS_00071332-exon-scaffold_60-1510915933:169275..170127Clytia hemisphaericaexon
TCONS_00071332-exon-scaffold_60-1491911889:170925..171116TCONS_00071332-exon-scaffold_60-1491911889:170925..171116Clytia hemisphaericaexon
TCONS_00071332-exon-scaffold_60-1491911889:170384..170744TCONS_00071332-exon-scaffold_60-1491911889:170384..170744Clytia hemisphaericaexon
TCONS_00071332-exon-scaffold_60-1491911889:169275..170127TCONS_00071332-exon-scaffold_60-1491911889:169275..170127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:169275..171116 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.16173	3.35101	3.58402	4.8042	5.25415	4.23107	3.02585	4.08658	1.63453	3.62769	2.71496	1.74947	2.15446	2.03533	1.93519	2.55629	3.6797	3.30188	1.82534	2.2343	2.18404	4.02683	4.18476	3.49074	1.69913	1.17614	2.26788	2.04574	1.50496	1.9829
Blast
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BLAST of TCONS_00071332 vs. Swiss-Prot (Human)
Match: KDM1A (Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.230e-60
Identity = 102/146 (69.86%), Postives = 121/146 (82.88%), Query Frame = 1 
Query:    4 EVVGVTNKNGIPTSQTF--KADAVLCTLPLGVLKHKNPPSIHFNPPLPDWKTGAMDRMGFGNLNKVILCFDRVFWNSSTNLFGHVASTTSNRGELFLFWSIYKAPVLLALVAGEAANKLETYSDDVIIGRALTVLKGIFGSNNVPQ 435
            EV+ V  ++   TSQTF  K DAVLCTLPLGVLK + PP++ F PPLP+WKT A+ RMGFGNLNKV+LCFDRVFW+ S NLFGHV STT++RGELFLFW++YKAP+LLALVAGEAA  +E  SDDVI+GR L +LKGIFGS+ VPQ
Sbjct:  601 EVIAVNTRS---TSQTFIYKCDAVLCTLPLGVLKQQ-PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQ 742

HSP 2 Score: 159.844 bits (403), Expect = 7.639e-42
Identity = 81/112 (72.32%), Postives = 92/112 (82.14%), Query Frame = 2 
Query:  515 VLKGIFGSNNVPQPKETIVTRWKSDEWSRGSYSFVAAGSSGNDYDIMAAXXXXXXXXXXXXXXGSNIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGLPYDLNK 850
            +LKGIFGS+ VPQPKET+V+RW++D W+RGSYS+VAAGSSGNDYD+MA P+ P P           IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG  Y L +
Sbjct:  730 ILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP---QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPR 838
The following BLAST results are available for this feature:
BLAST of TCONS_00071332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KDM1A2.230e-6069.86Lysine-specific histone demethylase 1A OS=Homo sap... [more]
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