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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071489 ID=TCONS_00071489|Name=TCONS_00071489|organism=Clytia hemisphaerica|type=transcript|length=1248bp
TAAGGATTATACTGATATCTTATACAGTTCAATGCAAATGAAAAAGTAAT
TAgatacattttcaaaaattcatatcttAAAGCCATCGTGAATGGCAACT
ACACCAAAAGTCAAATTTTCATACATAACATTAGTAAACCCTGCATTGTA
AATCAtatcagaaaaatgttcttgagATGGAAATTGTCTAATACTTTCAA
CAAGGTATTGGTATGAATTCCAGTCTTGTGCTATAACTTGACCAAGAACT
GGGATTACTTGAAATGAGTATGAATCATAAAGAGTTTTCAAGACTGGATT
TTCAACGTGAGAGAATTCTAAGCATGCAAATCGTCCACCAAATTTCAATA
CACGATAAGCTTCATCTAATACTTTGTCAATATGTGTTGTATTCCTGATA
CCAAAAGCAATTGTGTACAAATCAATTGATTCATCTTCAAAAGGTAAGTC
TTCAGCATTGGCCTGAACCCATTGAAACTTGTCCTGTATGCCAAGTTTTG
TAGCTCGACGCTTGCCAACATCCaacatatttttgttaataTCACTTACT
ATAATTTCAGTGCCCAACTCGGTGTTGCATTTGGAAGTATGAGCAAAATT
GTCCAACATTTTAAATGCAATGTCTCCAGTCCCACCTGCCATATCCAATA
TTTTCATTCCAGGTTTGAGTTGTAATGAACTTACAAAATGATTTTTCCAC
AAGCGATGAGTGCCAGCACTCATGAAATCATTCATCAAATCATAAGAATC
TGCTACGTTTTCAAAAACTCCATAAACTTTATCaactttttcttcttcct
tAACTTGCTCATACCCAAAATGTGTATATTGTTCGTTTACATTTTGTCCC
CGGCTGTTAGAATCATGGCTCATATTTCTTGTTGAGTGATTCCAGAGATA
TCTTTGTTGAAAGCCATTATTAAAACCAGACTGTGGGTTTAATGCACTAT
TTTTATTTATGGATAAGCATCGTTTTGATGCTCTCCTCAATGAACTAAAT
TTGCATAGTTGAAGTAAATTTGTATATTTCATACTACaagtaaaaattag
aaaatggaAAACTCAAATTCCTCTCTTTTTGTTCTTGGTTTGCCTATCag
tatgaaaaaatttttcacacaTCTCCCAGCCTATATGAAGAATTTTACAT
TAGTCTCCCACCCTTTTAATTTGCAGAAAATAATTGTGGTTTTGGAAAAG
AGGAACACGGGTGCAAACGGGAGAAGACATAACTTGACCCCCTATATG Run BLAST on NCBI protein sequence of TCONS_00071489-protein >TCONS_00071489-protein ID=TCONS_00071489-protein|Name=TCONS_00071489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MKYTNLLQLCKFSSLRRASKRCLSINKNSALNPQSGFNNGFQQRYLWNHS
TRNMSHDSNSRGQNVNEQYTHFGYEQVKEEEKVDKVYGVFENVADSYDLM
NDFMSAGTHRLWKNHFVSSLQLKPGMKILDMAGGTGDIAFKMLDNFAHTS
KCNTELGTEIIVSDINKNMLDVGKRRATKLGIQDKFQWVQANAEDLPFED
ESIDLYTIAFGIRNTTHIDKVLDEAYRVLKFGGRFACLEFSHVENPVLKT
LYDSYSFQVIPVLGQVIAQDWNSYQYLVESIRQFPSQEHFSDMIYNAGFT
NVMYENLTFGVVAIHDGFKI Run BLAST on NCBI transcript from alignment at scaffold_60:39417..40664 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071489 ID=TCONS_00071489|Name=TCONS_00071489|organism=Clytia hemisphaerica|type=transcript|length=1248bp|location=Sequence derived from alignment at scaffold_60:39417..40664 (Clytia hemisphaerica)
CATATAGGGGGTCAAGTTATGTCTTCTCCCGTTTGCACCCGTGTTCCTCT
TTTCCAAAACCACAATTATTTTCTGCAAATTAAAAGGGTGGGAGACTAAT
GTAAAATTCTTCATATAGGCTGGGAGAtgtgtgaaaaattttttcatact
GATAGGCAAACCAAGAACAAAAAGAGAGGAATTTGAGTTTtccattttct
aatttttacttGTAGTATGAAATATACAAATTTACTTCAACTATGCAAAT
TTAGTTCATTGAGGAGAGCATCAAAACGATGCTTATCCATAAATAAAAAT
AGTGCATTAAACCCACAGTCTGGTTTTAATAATGGCTTTCAACAAAGATA
TCTCTGGAATCACTCAACAAGAAATATGAGCCATGATTCTAACAGCCGGG
GACAAAATGTAAACGAACAATATACACATTTTGGGTATGAGCAAGTTaag
gaagaagaaaaagttGATAAAGTTTATGGAGTTTTTGAAAACGTAGCAGA
TTCTTATGATTTGATGAATGATTTCATGAGTGCTGGCACTCATCGCTTGT
GGAAAAATCATTTTGTAAGTTCATTACAACTCAAACCTGGAATGAAAATA
TTGGATATGGCAGGTGGGACTGGAGACATTGCATTTAAAATGTTGGACAA
TTTTGCTCATACTTCCAAATGCAACACCGAGTTGGGCACTGAAATTATAG
TAAGTGAtattaacaaaaatatgttGGATGTTGGCAAGCGTCGAGCTACA
AAACTTGGCATACAGGACAAGTTTCAATGGGTTCAGGCCAATGCTGAAGA
CTTACCTTTTGAAGATGAATCAATTGATTTGTACACAATTGCTTTTGGTA
TCAGGAATACAACACATATTGACAAAGTATTAGATGAAGCTTATCGTGTA
TTGAAATTTGGTGGACGATTTGCATGCTTAGAATTCTCTCACGTTGAAAA
TCCAGTCTTGAAAACTCTTTATGATTCATACTCATTTCAAGTAATCCCAG
TTCTTGGTCAAGTTATAGCACAAGACTGGAATTCATACCAATACCTTGTT
GAAAGTATTAGACAATTTCCATctcaagaacatttttctgataTGATTTA
CAATGCAGGGTTTACTAATGTTATGTATGAAAATTTGACTTTTGGTGTAG
TTGCCATTCACGATGGCTTTaagatatgaatttttgaaaatgtatcTAAT
TACTTTTTCATTTGCATTGAACTGTATAAGATATCAGTATAATCCTTA Coding sequence (CDS) from alignment at scaffold_60:39417..40664 >TCONS_00071489 ID=TCONS_00071489|Name=TCONS_00071489|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_60:39417..40664 (Clytia hemisphaerica)
ATGAAATATACAAATTTACTTCAACTATGCAAATTTAGTTCATTGAGGAG
AGCATCAAAACGATGCTTATCCATAAATAAAAATAGTGCATTAAACCCAC
AGTCTGGTTTTAATAATGGCTTTCAACAAAGATATCTCTGGAATCACTCA
ACAAGAAATATGAGCCATGATTCTAACAGCCGGGGACAAAATGTAAACGA
ACAATATACACATTTTGGGTATGAGCAAGTTaaggaagaagaaaaagttG
ATAAAGTTTATGGAGTTTTTGAAAACGTAGCAGATTCTTATGATTTGATG
AATGATTTCATGAGTGCTGGCACTCATCGCTTGTGGAAAAATCATTTTGT
AAGTTCATTACAACTCAAACCTGGAATGAAAATATTGGATATGGCAGGTG
GGACTGGAGACATTGCATTTAAAATGTTGGACAATTTTGCTCATACTTCC
AAATGCAACACCGAGTTGGGCACTGAAATTATAGTAAGTGAtattaacaa
aaatatgttGGATGTTGGCAAGCGTCGAGCTACAAAACTTGGCATACAGG
ACAAGTTTCAATGGGTTCAGGCCAATGCTGAAGACTTACCTTTTGAAGAT
GAATCAATTGATTTGTACACAATTGCTTTTGGTATCAGGAATACAACACA
TATTGACAAAGTATTAGATGAAGCTTATCGTGTATTGAAATTTGGTGGAC
GATTTGCATGCTTAGAATTCTCTCACGTTGAAAATCCAGTCTTGAAAACT
CTTTATGATTCATACTCATTTCAAGTAATCCCAGTTCTTGGTCAAGTTAT
AGCACAAGACTGGAATTCATACCAATACCTTGTTGAAAGTATTAGACAAT
TTCCATctcaagaacatttttctgataTGATTTACAATGCAGGGTTTACT
AATGTTATGTATGAAAATTTGACTTTTGGTGTAGTTGCCATTCACGATGG
CTTTaagatatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071489-exon-scaffold_60-1491911889:39417..40664 | TCONS_00071489-exon-scaffold_60-1491911889:39417..40664 | Clytia hemisphaerica | exon |
| TCONS_00071489-exon-scaffold_60-1510915933:39417..40664 | TCONS_00071489-exon-scaffold_60-1510915933:39417..40664 | Clytia hemisphaerica | exon |
| TCONS_00071489-exon-scaffold_60-1575043694:39417..40664 | TCONS_00071489-exon-scaffold_60-1575043694:39417..40664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:39417..40664 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008168 |
methyltransferase activity |
Blast
BLAST of TCONS_00071489 vs. Swiss-Prot (Human)
Match: COQ5 (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Homo sapiens GN=COQ5 PE=1 SV=2) HSP 1 Score: 296.975 bits (759), Expect = 5.723e-97 Identity = 154/276 (55.80%), Postives = 188/276 (68.12%), Query Frame = -1
Query: 73 THFGYEQXXXXXXXXXVYGVFENVADSYDLMNDFMSAGTHRLWKNHFVSSLQLKPGMKILDMAGGTGDIAFKMLD--NFAHTSKCNTEL-----------------------GTEIIVSDINKNMLDVGKRRATKLGIQDKFQWVQANAEDLPFEDESIDLYTIAFGIRNTTHIDKVLDEAYRVLKFGGRFACLEFSHVENPVLKTLYDSYSFQVIPVLGQVIAQDWNSYQYLVESIRQFPSQEHFSDMIYNAGFTNVMYENLTFGVVAIHDGFKI 825
THFG+E V EEEK KVY VFE+VA YD+MND MS G HR+WK+ + + PG ++LD+AGGTGDIAF+ L+ H K +L G+ ++V DINK ML VGK++A G + WV +AE+LPF+D+ D+YTIAFGIRN THID+ L EA+RVLK GGRF CLEFS V NP++ LYD YSFQVIPVLG+VIA DW SYQYLVESIR+FPSQE F DMI +AGF V YE+LT G+VAIH GFK+
Sbjct: 52 THFGFETVSEEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVGKQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDMIEDAGFHKVTYESLTSGIVAIHSGFKL 327
The following BLAST results are available for this feature:
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