TCONS_00071152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071152
Unique NameTCONS_00071152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071152 ID=TCONS_00071152|Name=TCONS_00071152|organism=Clytia hemisphaerica|type=transcript|length=1604bp
CTTTGAGACAatatggaaaattttggaaaacatGAAATATCGGAGGCGTC
CTGAGAGAATAGTATCAGGCAGATCAACTGAATTTTCTATTGCTTCTGAT
TCTAGTTCAAAACTGGTAGGATAGGAAAGTACATGAGTAATTGAAGTATA
TAATGGTAGTCAAGACAAGTTATAGTAACAAAGACATTggctaaaataaa
ttttcattatATGAAAACACAATCTATATAAAACgttatatcaaaataaa
taaaagtatctaaaaatactctctaaaattgtttttttttagttttgata
cAAATACTATCCTCCCATATCCTTGAATCATTATATGTAATACACAATAC
AAATTCCATTTTCGTATACCCTCgtatgcattcaaataatattCATAGTA
GTATCAACCATAGATTTAAaaagcccgaatggctagatgtcgtgcttcgg
ctgaaaagtgtgccgagttTAGAtgggaaatcctacctaggtcacgtgat
ataatagaatttcagcgcttgaacAATAAaaagcttcgcaggttttcgaG
AACAACAGCAGCAATactttttgcgatattcacttttttttgcttggaag
agcttaaagcacgacatctagcccttcgggctttataaatgtGTGGTATC
AACCGTTCAAAACAAGTTAGCTTGCATActgtattttatattttcacttT
ACTATACAACGCAGCACTGAGCAATAGTAGTAAGGGTAAATCTGACCTGT
CAGATATCACAAAATACCAAGAACACACTAAAGATTTTGATTtccaatct
taaaaatttcaACGGTACGTCGTCATAGATTTGATTATTTTAACGCCTTT
GGTTTTTCTTTCCTCCAGCAGAACCCTGACCACTTGGGCCAGCATCTGgt
gatttaaaataaaaatcaatcCCTCTTTGAGGCTTTTCTGCATTCTTTTG
AAATGCTTTACCGTTCGTTTTATGTGTATGTCGGCCCCACTCAGGTGCCA
TTACCATAGGCTTTGGGTAGTCCTGCCCTAATGAGAACTCCAATCTTTGT
AGCTCCCGGTCAGGAATAGTCCAAGGTACATGGACCTTGTTAGCAGGAAG
ATTGGTAAGCTCTGGAACCCAAGTTTTCACAAATTTTCCTTCAGCATCAT
AATCAAGAGCTTGTTTGATCATATTGAATTTACGGTCTTGTCTTGGATCA
TTACCAATGCCAGCTGAATAATTCCAATTACCATAATTACTGCAAACATC
ATGATCAAGAAGTTGCGATTCGAACCATTCGGCTCCAAGACGCCAGTCTA
ATTTCAAGTCCTTGACCAAGAAACTAGCCACGTTTTGACGACCCCGATTT
GACATCCAGCCTGTATGAAGTANCAAATCAATCTCTTCTGAAGTCACTTC
TTTTTGATAAATGATGGAGGAGACAGGTGCTTCAGAATTTTGACAAAGTT
TTACCAAGTCTTTGATGGTTGACAGTGGAGATTCATTTCGAACAACTAAG
TTTGAACCAAGTTTTTGTAGATTAGCACGTAGATCAGTGATGCTTTCAAT
GAGAAATTTTGTTCTGTGTGTACCACTTCTTGGCAAGTTAAAGCTATACG
TTCC
Run BLAST on NCBI

transcript from alignment at scaffold_6:240489..246929+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071152 ID=TCONS_00071152|Name=TCONS_00071152|organism=Clytia hemisphaerica|type=transcript|length=6441bp|location=Sequence derived from alignment at scaffold_6:240489..246929+ (Clytia hemisphaerica)
CTTTGAGACAatatggaaaattttggaaaacatGAAATATCGGAGGCGTC
CTGAGAGAATAGTATCAGGCAGATCAACTGAATTTTCTATTGCTTCTGAT
TCTAGTTCAAAACTGGTAGGATAGGAAAGTACATGAGTAATTGAAGTATA
TAATGGTAGTCAAGACAAGTTATAGTAACAAAGACATTggctaaaataaa
ttttcattatATGAAAACACAATCTATATAAAACgttatatcaaaataaa
taaaagtatctaaaaatactctctaaaattgtttttttttagttttgata
cAAATACTATCCTCCCATATCCTTGAATCATTATATGTAATACACAATAC
AAATTCCATTTTCGTATACCCTCgtatgcattcaaataatattCATAGTA
GTATCAACCATAGATTTAAaaagcccgaatggctagatgtcgtgcttcgg
ctgaaaagtgtgccgagttTAGAtgggaaatcctacctaggtcacgtgat
ataatagaatttcagcgcttgaacAATAAaaagcttcgcaggttttcgaG
AACAACAGCAGCAATactttttgcgatattcacttttttttgcttggaag
agcttaaagcacgacatctagcccttcgggctttataaatgtGTGGTATC
AACCGTTCAAAACAAGTTAGCTTGCATActgtattttatattttcacttT
ACTATACAACGCAGCACTGAGCAATAGTAGTAAGGGTAAATCTGACCTGT
CAGATATCACAAAATACCAAGAACACACTAAAGATTTTGATTtccaatct
taaaaatttcaACGGTACGTCGTCATAGATTTGATTATTTTAACGCCTTT
GGTTTTTCTTTCCTCCAGCAGAACCCTGACCACTTGGGCCAGCATCTGgt
gatttaaaataaaaatcaatcCCTCTTTGAGGCTTTTCTGCATTCTTTTG
AAATGCTTTACCGTTCGTTTTATGTGTATGTCGGCCCCACTCAGGTGCCA
TTACCATAGGCTTTGGGTAGTCCTGCCCTAATGAGAACTCCAATCTTTGT
AGCTCCCGGTCAGGAATAGTCCAAGGTACATGGACCTTGTTAGCAGGAAG
ATTGGTAAGCTCTGGAACCCAAGTTTTCACAAATTTTCCTTCAGCATCAT
AATCAAGAGCTTGTTTGATCATATTGAATTTACGGTCTTGTCTTGGATCA
TTACCAATGCCAGCTGAATAATTCCAATTACCATAATTACTGCAAACATC
ATGATCAAGAAGTTGTGATTCGAACCATTCGGCTCCAAGACGCCAGTCTA
ATTTCAAGTCCTTGACCAAGAAACTAGCCACGTTTTGACGACCCCGATTT
GACATCCAGCCTGTATGAAGTAACTCTCTCATATTTGCGTCAACAAAAGG
AACACCTGTCTCACCTTGACACCATTTCTGAAAAGCAATTTTGTCTTGTT
TCCAAGGTAAATGTTTGCCCATGATGCCAGATAAATAGAACACTTTTCTC
CCATATTTCCAACATACAAATTTAAAGTAATCTCTCCAGATCAGTTCAAA
GATACTCCAGTAAGTGGATTGGTTGGATACACGTTGATTTTCATATCTCT
TGACTTCATGGTAGATCTGTCTTGGAGATAAAGAACCATTAGCAAGCCAG
ATACTAAACTTGGTCGAGTATTCTTCTCCTAATAGACCATTCCTGGTTTC
TTTGTAAGTTGAAATGGCATCAGTGTCCCAAAGATATTTTTGGAGATGTT
TCAAGCCAGCACTTTCACCACCTTCTAGTGGAACAGCTGTTCTGTTATCT
TGCATATAGCTTTGAACACCGATCAACTTCTCCATTGTAGGGATATCACC
AAGACTGGCACCTTTGATAGGTGGCAGTTTATTAAGGGTTAGTGGTGTAG
GAATTAAATCACGAATTTCGCTTTTAGATTCTACTCCTTGACGAAACTTG
GAATATGTATCTGGGATGGTCTTCTTATTGTATGGAATGTCATCTCTAAA
AGTATAAgaacaataaaatcaaataactATGCTAACATAGAGAGAGCATG
ATTCAaactagtctacacaatagacagctccaggcttttaggccttaggA
GTAGGAGCCTATCTTCNACTCTCGGTCAGGAATGGTCCAAGGTACATGGA
TCTTGTTAGCAGGAAGATTGGTAAGCTCTGGAACCCAAGTTTTCACAAAT
TTTCCTTCAGCATCATAATCAAGAGCTTGTTTGATCATATTGAATTTACG
GTCTTGTCTTGGATCATTACCAATGCCAGCTGAATAATTCCAATTACCAT
AATTACTGCAAACATCATGATCAAGAAGTTGTGATTCGAACCATTCGGCT
CCAAGACGCCAGTCTAATTTCAAGTCCTTGACCAAGAAACTAGCCACGTT
TTGACGACCCCGATTTGACATCCAGCCTGTATGAAGTAACTCTCTCATAT
TTGCGTCAACAAAAGGAACACCTGTCTCACCTTGACACCATTTCTGAAAA
GCAATTTTGTCTTGTTTCCAAGGTAAATGTTTGCCCATGATGCCAGATAA
ATAGAACACTTTTCTCCCATATTTCCAACATACAAATTTAAAGTAATCTC
TCCAGATCAGTTCAAAGATACTCCAGTAAGTGGATTGGTTGGATACACGT
TGATTTTCATATCTCTTGACTTCATGGTAGATCTGTCTTGGAGATAAAGA
ACCATTAGCAAGCCAGATACTAAACTTGGTCGAGTATTCTTCTCCTAATA
GACCATTCCTGGTTTCTTTGTAAGTTGAAATGGCATCAGTGTCCCAAAGA
TATTTTTGGAGATGTTTCAAGCCAGCACTTTCACCACCTTCTAGTGGAAC
AGCTGTTCTGTTATCTTGTATATAGCTTTGAACACCGATCAACTTCTCCA
TTGTAGGGATATCACCAAGACTGGCACCTTTGATAGGTGGCAGTTTATTA
AGGGTTAGTGGTGTAGGAATTAAATCACGAATTTCGCTTTTAGATTCTAC
TCCTTGACGAAACTTGGAATATGTATCTGGGATGGTCTTCTTATTGTATG
GAATGTCATCTCTAAAAGTATAAgaacaataaaatcaaataactATGCTA
ACATAGAGAGAGCATGATTCAaactagtctacacaatagacagctccagg
cttttaggccttaggAGTAGGAGCCTATCTTCCTTAATTTATGCTCGAAA
CCGAAACGAATATTTGATAAAACTAAGTAATTTTATcaacagaaaaaaat
atgtcagagaaaaaatactaagaaaaatgAGGAAACTCTATTAAATTTGA
CATCATACCGAATTCACAGAGAGGAGACTGAAACTTACTTGTGAAACAAT
GACAAACCCCAAACAGGGTAGTCTTCAATGCTTTGTTCTTTGCAGAaaga
tttgatttgtttttctaaatcaatCTCTTCTGAAGTCACTTCTTTTTGAT
AAATGATGGAGGAGACAGGTGCTTCAGAATTTTGACAAAGTTTTACCAAG
TCTTTGATGGCTGACAGTGGAGATTCATTTCGAACAACTAAGTTTGAACC
AAGTTTTTGTAGATTAGCACGTAGATCAGTGATGCTTTCAATGAGAAATT
TTGTTCTGTGTGTACCACTTCTTGGCAAGTTAAAGCTATACGTTCCCTAT
AAAAAAGAGAGTTAGAGAAAAGGGAGTTTGGGATAATTTCtgggttttaa
aaatttttacaattttctttttttttataagaatagtgtactttggatga
gggtcaagtatttttaagaaagtgccaaaatattcttaacatattcttaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ctttttgcgatattcacttttttttgcttagaagagcttaaagcacgaca
tctagcccttcgggctttataaatgtGTGGTATCAAccgttcaaaatcaa
aacaagttaGCTTGCATACTGTATTTTATGTTTTCACTTTACTATACAAC
ACAGCACTGAGTAGTAGTAAGGGTAAATCTGACCTGTCAGATATCACAAC
ATACTAAGAACACACTAAAGATTTTGATTtccaatcttaaaaatttcaAC
GGTACGTCGTCATAGATTTGATTATTTTAACgccttttgtttttctttcc
tccAGCAGAACCCTGACCACTTGGGCCAGCATCTGgtgatttaaaataaa
aatcaatcCCTCTTTGAGGCTTTTCTGCATTCTTTTGAAATGCTTTACCG
TTCGTTTTATGTGTATGTCGGCCCCACTCAGGTGCCATTACCATAGGCTT
TGGGTAGTCCTGCCCTAATGAGAACTCCAATCTTTGTAGCTCCCGGTCAG
GAATAGTCCAAGGTACATGGACCTTGTTAGCAGGAAGATTGGTAAGCTCT
GGAACCCAAGTTTTCACAAATTTTCCTTCAGCATCATAATCAAGAGCTTG
TTTGATCATATTGAATTTACGGTCTTGTCTTGGATCATTACCAATACCAG
CTGAATAATTCCAATTACCATAATTACTGCAAACATCATGATCAAGAAGT
TGTGATTCGAACCATTCGGCTCCAAGACGCCAGTCTAATTTCAAGTCCTT
GACCAAGAAACTAGCCACGTTTTGACGACCCCGATTTGACATCCAGCCTG
TATGAAGTAACTCTCTCATATTTGCGTCAACAAAAGGAACACCTGTCTCA
CCTTGGCACCATTTCTGAAAAGCAATTTTGTCTTGTTTCCAAGGTAAATG
TTTGCCCATGATGCCAGATAAATAGAACACTTTTCTCCCATATTTCCAAC
ATACAAATTTAAAGTAATCTCTCCAGATCAGTTCAAAGATACTCCAGTAA
GTGGATTGGTTGGATACACGTTGATTTTCATATCTCTTGACTTCATGGTA
GATCTGTCTTGGAGATAAAGAACCATTAGCAAGCCAGATACTAAACTTGG
TCGAGTATTCTTCTCCTAATAGACCATTCCTGGTTTCTTTGTAAGTTGAA
ATGGCATCAGTGTCCCAAAGATATTTTTGGAGATGTTTCAAGCCAGCACT
TTCACCACCTTCTAGTGGAACAGCTGTTCTGTTATCTTGCATATAGCTTT
GAACACCGATCAACTTCTCCATTGTAGGGATATCACCAAGACTGGCACCT
TTGATAGGTGGCAGTTTATTAAGGGTTAGTGGTGTAGGAATTAAATCACG
AATTTCGCTTTTAGATTCTACTCCTTGACGAAACTTGGAATATGTATCTG
GGATGGTCTTCTTATTGTATGGAATGTCATCTCTAAAAGTATAAgaacaa
taaaatcaaataactATGCTAACATAGAGAGAGCATGATTCAaactagtc
tacacaatagacagctccaggcttttaggccttaggAGTAGGAGCCTATC
TTCCTTAATTTATGCTCGAAACCGAAACGAATATTTGATAAAACTAAGTA
ATTTTATcaacagaaaaaaatatgtcagagaaaaaatactaagaaaaatg
AGGAAACTCTATTAAATTTGACATCATACCGAATTCACAGAGAGGAGACT
GAAACTTACTTGTGAAACAATGACAAACCCCAAACAGGGTAGTCNGCCAG
CTGAATAATTCCAATTACCATAATTACTGCAAACATCATGATCAAGAAGT
TGCGATTCGAACCATTCGGCTCCAAGACGCCAGTCTAATTTCAAGTCCTT
GACCAAGAAACTAGCCACGTTTTGACGACCCCGATTTGACATCCAGCCTG
TATGAAGTANCAAATCAATCTCTTCTGAAGTCACTTCTTTTTGATAAATG
ATGGAGGAGACAGGTGCTTCAGAATTTTGACAAAGTTTTACCAAGTCTTT
GATGGTTGACAGTGGAGATTCATTTCGAACAACTAAGTTTGAACCAAGTT
TTTGTAGATTAGCACGTAGATCAGTGATGCTTTCAATGAGAAATTTTGTT
CTGTGTGTACCACTTCTTGGCAAGTTAAAGCTATACGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044227XLOC_044227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071152-exon-scaffold_6-1491911889:240489..241735TCONS_00071152-exon-scaffold_6-1491911889:240489..241735Clytia hemisphaericaexon
TCONS_00071152-exon-scaffold_6-1510915933:240489..241735TCONS_00071152-exon-scaffold_6-1510915933:240489..241735Clytia hemisphaericaexon
TCONS_00071152-exon-scaffold_6-1575043694:240489..241735TCONS_00071152-exon-scaffold_6-1575043694:240489..241735Clytia hemisphaericaexon
TCONS_00071152-exon-scaffold_6-1491911889:246573..246929TCONS_00071152-exon-scaffold_6-1491911889:246573..246929Clytia hemisphaericaexon
TCONS_00071152-exon-scaffold_6-1510915933:246573..246929TCONS_00071152-exon-scaffold_6-1510915933:246573..246929Clytia hemisphaericaexon
TCONS_00071152-exon-scaffold_6-1575043694:246573..246929TCONS_00071152-exon-scaffold_6-1575043694:246573..246929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:240489..246929 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.77458	4.35061	2.55633	1.31631	3.39916	1.4536	1.86811	2.74689	2.01459	1.84223	1.63958	1.90276	1.48235	1.68812	1.50087	1.9169	3.96351	4.99541	0.931756	0.769547	9.66865	6.75313	6.19675	4.79544	2.11688	2.04722	5.49623	4.08299	6.70851	4.59403
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002081Cryptochrome/DNA_photolyase_1
IPR014729Rossmann-like_a/b/a_fold
IPR006050DNA_photolyase_N
IPR005101Cryptochr/Photolyase_FAD-bd
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top