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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071154 ID=TCONS_00071154|Name=TCONS_00071154|organism=Clytia hemisphaerica|type=transcript|length=665bp
CTCATATTAAAGCTACTAGCGGTACATTTGAAAGTGGGGGACATTTCACT
TTATATTTTAGTACTGCAGAACTTCTTTTTTCCGCACAAAATACTTCTGG
TACTTCAGAATCCAAAAAAATGCTTCAGTGGTGTTTGTCACTAACCAGTT
TTGAATAATTAAACGATAGTCGATAAAACTAGTGGCAAACGCATCATGGG
CTATTGCGTGCTTTCTTTCTATAAAACGTTACGTATCATGAATATGAATA
AGTAGGTTTTATAAAAATTCAGGCTGAGtaacaaaaataacataaaaaat
tggtatcggaactgagaaattttctttaagaaacatatttaaaaaatttt
aattttgttttagcATGGGCAAAAGAGCAAGTGTACCAGCAGAGCCAACT
TCTACACCTGGAGGAGTAATGGTTATTTAccctcaaaataaaaaaaagaa
atcctcAACaccaaaGCAATCAAACAATAACAAAAGTTTGGACAATTCAA
GAATAAGTGGAATCAGTATGTTAGATGACAGTAGGGCCAATGGCAGCGAT
GTATCCCAGAGaaaaTCATTCAGAAGTGAAGCAAAAGCGCTAGAGAGAAA
GCAGGATATGAGAGTAAAACAAAGAATTAAGAAGGCCAAAGAGGAAAAAA
CCGTCCGCAGTCAAT Run BLAST on NCBI transcript from alignment at scaffold_6:8411..12354- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071154 ID=TCONS_00071154|Name=TCONS_00071154|organism=Clytia hemisphaerica|type=transcript|length=3944bp|location=Sequence derived from alignment at scaffold_6:8411..12354- (Clytia hemisphaerica)
CTCATATTAAAGCTACTAGCGGTACATTTGAAAGTGGGGGACATTTCACT
TTATATTTTAGTACTGCAGAACTTCTTTTTTCCGCACAAAATACTTCTGG
TACTTCAGAATCCAAAAAAATGCTTCAGTGGTGTTTGTCACTAACCAGTT
TTGAATAATTAAACGATAGTCGATAAAACTAGTGGCAAACGCATCATGGG
CTATTGCGTGCTTTCTTTCTATAAAACGTTACGTATCATGAATATGAATA
AGTAGGTTTTATAAAAATTCAGGCTGAGTAACAAAAATAACATAAAAAAT
TGGTATCGGAACTGAGAAATTTTCTTTAAGAAACATATTTAAAAAATTTT
AATTTTGTTTTAGCATGGGCAAAAGAGCAAGTGTACCAGCAGAGCCAACT
TCTACACCTGGAGGAGTAATGGTTATTTACCCTCAAAATAAAAAAAAGAA
ATCCTCAACACCAAAGTAAATTTTTTTTTTTTTAATTTTTATTCCACCAA
TACAGTGAGTGGTCCCAAATCCGACAGCCCTGGCTAAATCCGATGGGGTC
TTTCAAAGATACAAACTAAAATAAAAACAACCTTTGCGCTTTGACGCAAT
GAAGATACCAAAGTGTCAACTAAACTGAGAGATTTGATACACATTGATTT
TGAACCAAATTACAATAATTGTGCTTCTTATACAAAACATAATTTTTTAT
TACATAAATTGTTAATGTTTTAAACACGAGCAACAGATTCAGAATAATGG
AGGTAATTATTTTTACAACTCACACTTTTTTATCACATTAATTGAAATCT
AGACATTATAGCCATCTTGTAAGATGTTTTGTTTCAAGAGTCCTTGCAAT
AGTTTATCGTTCAACATGGAGAAGGAATATTTGTAAACATAGAATTTTTT
TCATAACAGTTATTTGGGATGTCGGAATTACGCAGGGTTGTCGGATTTAG
GACCACTCACGGTACCTATCCTGAAAAATGAATTAAATTCAGTTAATGAT
AAGTGTGCACTCTTTTTTTTTACCACATGGAAACCTCTCCCAAGGGAATT
AGTCTATACGTTTCCACATTAAAGCGAAAATGAGTGCACAGTTATCGTGA
ACAGACAGGTTCATTCAGTCATTAACAATAACAGAGTCTCGCATTTTGTA
TCATTGCATTTGTATTGTATTAGGAATGTAATTCTATATATTTCTTTCAA
ATCCTTGAAAATTATTGTTACTTTTCATTTCAACAGGCAATCAAACAATA
ACAAAAGTTTGGACAATTCAAGAATAAGTGGAATCAGTATGTTAGATGAC
AGTAGGGCCAATGGCAGCGATGTATCCCAGAGGTACTTCCCTTTTTATTT
TCAAATTTTCAAATTTATTTTTATTCTCCAAAAAAAGTGTTTTTAGACTT
TTTTAAACCAGGCATATAAATGAAAAAAACTCAGCTCTCTACTGTACAAT
TTATTTTGGGATAGATTAATTTCAATATCGAGAAAAAAAAGCTCTGATAT
GATGACTTTCAGTTGTAATCAAATACTGTCTTAAAAATCCCCTGATTTTT
TGTTCAATGATAATCTACTAACCGGCATCAGTGTAGTCAAATGTGGCAAT
CACTTTTCCTATACTAAGGCATTCAAAATGCTAAAGTATAATCAGTAGTA
TGTCATTGTATGAAGAAGAAAGGACATTCTTTACATCTTTTTCAACAATA
TGAATTTTGGGCACTCTACTAACCGGCATCAGTGTAGTCAAATGTGGCAA
TCACTTTTCCTATACTAAGGCATTCAAAATGCTAAAGTATAATTAGTAGT
ATGTCCCATTTTTATAATTTGTTAAATGTCTATTCCAAAAATCAAACTGT
TTGTTTTTTTGNAATTTTTATAATTTGTATTCAATGTCTATTCCAAAAAT
TAAACTGTTTGTTTTTTTTGTCATATGTGAAGTAAAGCATATAAAGTATT
TGAATACAACTATGAAAGCCATGTTTATTGAAGATACCTCTTAAGATGTG
AAGAATAATTTTGAAATCTATTCTAGATCTATCTATTCTAGAAAATTTTG
AGATGCAGGCGAGGTTGACAATTTGGGATTAAAAACATCAAAGTCACAGG
TATTGTTAGATAAGGGGAGGCTCCCACAAATACCAGCAAATTTCAATTGG
GACAGTCTGTTATTAAAGTACATTTCAAATTAGATGGCGGTAAATTTTCA
ATTGCGTTTTACTTTTGATAGATTTCAAAGGGGATTAACGAATGATAATT
TTCCTGTTAATAAGAAGAGTCTTGTGATAAATGGAATGTTCACATTTGAT
GGGTTATCATAGTGTGCACCCCCCCTAAATTAAAGGGGGGCTTTGTTGAT
TTCGGTTCCAAATCTTTAGGTGGGACTTCGGATTTTTTGGATCTCAGGGG
GGGTTAATAGGATGAGCTGGGACTAAAATTTGATTGGTGGGACTTGCCAA
CTTCGTTACAGAGGCCTAATTTTCAAGCACAAGTATACATACCATTTTAA
AAATTTTCGCCTTCTTACTTAAACCAATTTGCTATTTAATGCTCTCTTCT
TTATAAAATCATAATTTGAAGCATATCTTAATCTTTGAATCTTAGCGGAA
TCACTTTCATAGTTAAAAGGGGTACACACAATTGCCTTTGGGAACAGGGA
AAAATTCGAGTTTTAGGTGGGACCAAAGATTCAAGTTATCAGGTGGGGGT
TTTAGATAGTGCTGGGACCTCATTTTTTTGGTGGGACCTTGACACCCCTT
GCACACAATGCTTATCCCTTGAGGGCAAATTTTGTCGAACGTTTTTAACG
AATTTTTTCCCTCTTTCTATCTGAAATCATATTATACAAACTCAATTGGT
GCTAAATTTTTAAAACAACAGTAAGAGTTTAGCTTGTTGGTAAAATGCTT
CAAGTCAGCTAATTTAGTAAGGGGTCTCCAGTTTTTCCATTTTAGTAAGA
CCCCTTCCTACGCAAGACTTCCTTCCTTCTTGATCCCTCTAGAAACTGTG
TGTTTCACTTAAAATTTTGCTTATACCGCTCTTTAACCCTATTTAGCGGT
TTTTTTGCGGTACATAGTTCACATAAAAACTTTAAAAATGGTAGAAGAGT
CATGAAAATTGGCAGGATTGTACATATCCATACAAAGTTTGCTTTGGCAC
CCAAAATTTGATGACGTCAGCAATTTTTTATAAGCATTTTATGAAAAATA
GAAAAAAATATGACATTTTTTGAAAAGACTAGCTCTTAATGTGAAAGAGA
TTTTTCAATTCTGTTTTGATATTCTGAAAGCCAATGTAGAATTCCCTTTT
GACATTATCAAATCAGATTTTCAAAATTTTTAAGTCCTTCTTAGAAATCT
TAGAATGAAGAAGAGAGTTCAACCAACCCCTTGAATTTCAAATCGCCTCA
ACCCCCTCTTTTTCAGAAAATTAGTCCCAAAAAGTCAACCCCCCCCCCTT
TTTTAAAGAGGTGTTCTCACTATGACGGGGAAGACCTTGTTCGAGAGCCA
GGGCTGGGCCAAATTAATGAGATTGAAAAAGAATCTGCAGATCATCCAGG
GGAAGAAAACAATTATTGTTTAAATAGCCTTTTTCTTCCTTCAAGACGTG
CTATCTTATAATGAAAAGTATCAAAATTATCAATCTAAGTAAATATTGCC
AATTAAGTACTCAAAAATTCTTTAAATTATAATATACATAAAACAACAGT
TAAAGTTTAGTTTAGTTTTTAGTTCTCCAATTTTGTCAGAGAAATTCATT
GATTGTTTACAAATTTTTAAAAAGTTTGATAATCCTTCTTATTGTGAAGA
GTACCGTAATGAAAGTTCTTTCATTGTTTATTGTTTATAGAAAATCATTC
AGAAGTGAAGCAAAAGCGCTAGAGAGAAAGCAGGATATGAGAGTAAAACA
AAGAATTAAGAAGGCCAAAGAGGAAAAAACCGTCCGCAGTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071154-exon-scaffold_6-1575043694:11890..12354 | TCONS_00071154-exon-scaffold_6-1575043694:11890..12354 | Clytia hemisphaerica | exon |
| TCONS_00071154-exon-scaffold_6-1575043694:11023..11118 | TCONS_00071154-exon-scaffold_6-1575043694:11023..11118 | Clytia hemisphaerica | exon |
| TCONS_00071154-exon-scaffold_6-1575043694:8411..8514 | TCONS_00071154-exon-scaffold_6-1575043694:8411..8514 | Clytia hemisphaerica | exon |
| TCONS_00071154-exon-scaffold_6-1510915933:11890..12354 | TCONS_00071154-exon-scaffold_6-1510915933:11890..12354 | Clytia hemisphaerica | exon |
| TCONS_00071154-exon-scaffold_6-1510915933:11023..11118 | TCONS_00071154-exon-scaffold_6-1510915933:11023..11118 | Clytia hemisphaerica | exon |
| TCONS_00071154-exon-scaffold_6-1510915933:8411..8514 | TCONS_00071154-exon-scaffold_6-1510915933:8411..8514 | Clytia hemisphaerica | exon |
| TCONS_00071154-exon-scaffold_6-1491911889:11890..12354 | TCONS_00071154-exon-scaffold_6-1491911889:11890..12354 | Clytia hemisphaerica | exon |
| TCONS_00071154-exon-scaffold_6-1491911889:11023..11118 | TCONS_00071154-exon-scaffold_6-1491911889:11023..11118 | Clytia hemisphaerica | exon |
| TCONS_00071154-exon-scaffold_6-1491911889:8411..8514 | TCONS_00071154-exon-scaffold_6-1491911889:8411..8514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:8411..12354 - |
Blast
The following BLAST results are available for this feature:
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