TCONS_00071131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071131
Unique NameTCONS_00071131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071131 ID=TCONS_00071131|Name=TCONS_00071131|organism=Clytia hemisphaerica|type=transcript|length=197bp
CAGGGTAAGCAAAGTGAAGATACCTGGGCTTATCGAGTTCAATCAGAGTT
AAACAGACCTGGAGTGGTGTTTTTTAAAAGGATTAacggaaaaattcaaa
aagtggaGGAGGAACAATCGGGCTATACAGTTACCACTACCAGTCAAAAA
TTCAACAAATGTCTTGAACTAAATTTACAAGCTGACATGAATTTCAA
Run BLAST on NCBI

transcript from alignment at scaffold_59:50872..51900+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071131 ID=TCONS_00071131|Name=TCONS_00071131|organism=Clytia hemisphaerica|type=transcript|length=1029bp|location=Sequence derived from alignment at scaffold_59:50872..51900+ (Clytia hemisphaerica)
CAGGGTAAGCAAAGTGAAGATACCTGGGCTTATCGAGTTCAATCAGAGTT
AAACAGACCTGGAGTGGTGTTTTTTAAAAGGATTAacggaaaaattcaaa
aagtggaGGAGGAACAATCGGGCTATACAGTTACCACTACCAGTCAAAAA
TTCAACAAATGTCTTGAACTAAATTGTAAGCATAATTTTTAATCCTAAAA
TACTCTTCNACTATTTTGTAAAGTAAAAGCATTTTAGATAATCTAAACAT
GACAGAAGATGTTAAAAATTCCAAATGACTTTTAATGTTTTAGAAAACTG
TCCTTATGATTATGCGGCTAATCAGGGTTAATGGCAATGGACCTTTTTTA
AAGTATGCCAGCAGTGAAATTCTTTAAGGATATATCAGAAAACAATACAC
GTTGAAAGTCTACCCAAAAAAATTAATGTCCCAGAATTTATAGAATGTGA
AATATTTATGTATGCATTATTTTTTTCCAGAAACTGGCGATCGTACTTCA
CAATGCACGACATGAATTCTTTTACCTCAATCGTTAAAGCANattttttt
tctttattttttttttcaatgatttatttggctgcaaaaaataaatttaa
cagttggaaatagaaaaatcaaaaaggaaaGCAGGCCAGGAAATTACCAT
TCACCTAGATGTCTAGCATCTAATCAAAATGGCAACCTCAGAGAGACTTT
TCAAAAGATTTGGTCCAGGGGGGCTCCTCAGAGAATTTGGGTGTGTGTTT
TAGGGGCCTATTCTCAAATGATACAGCCTGTTTATAGGACAAggtatgat
tttgatttttctttggcTTCATTCCTTGATTCCCTGCATTCCCAGATCTT
GGTAACTGTTTTAAATGGGCGAGAAACTGTATGATTAAAGAAGGTGTATC
GCCTTGATAACAAAACGGTTTTAGCATCTAAGTAGATTGAAGCTGTTTAA
AATTGAAGTATGTTTATTTTAGAAAtatcatttctcatattatTGACTTT
TTTCTAGTACAAGCTGACATGAATTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044213XLOC_044213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071131-exon-scaffold_59-1491911889:50872..51046TCONS_00071131-exon-scaffold_59-1491911889:50872..51046Clytia hemisphaericaexon
TCONS_00071131-exon-scaffold_59-1510915933:50872..51046TCONS_00071131-exon-scaffold_59-1510915933:50872..51046Clytia hemisphaericaexon
TCONS_00071131-exon-scaffold_59-1575043694:50872..51046TCONS_00071131-exon-scaffold_59-1575043694:50872..51046Clytia hemisphaericaexon
TCONS_00071131-exon-scaffold_59-1491911889:51879..51900TCONS_00071131-exon-scaffold_59-1491911889:51879..51900Clytia hemisphaericaexon
TCONS_00071131-exon-scaffold_59-1510915933:51879..51900TCONS_00071131-exon-scaffold_59-1510915933:51879..51900Clytia hemisphaericaexon
TCONS_00071131-exon-scaffold_59-1575043694:51879..51900TCONS_00071131-exon-scaffold_59-1575043694:51879..51900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:50872..51900 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.69791	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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