TCONS_00071050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071050
Unique NameTCONS_00071050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071050 ID=TCONS_00071050|Name=TCONS_00071050|organism=Clytia hemisphaerica|type=transcript|length=420bp
AGATGCTCCTTTAGTTTCTACAGATGGTCAAGAAACAACGCCAAGCTCAG
GAGAAACAACGCCAAGTTCAGGAGAAACTACTCCAAGCTCTGAAGAAACA
ACACCAAGTTCTGAAGAAAAAACAACTGCTGCAAGTGGATCAACAACATC
AAAACCAGTTGTCTCAACATATGCTCCTTTAGTTTCTACAGATGGTCAAG
AAAGCACACCAAGGTCTGGAGAAACTACTCCAAGCTCTGAAGACAAAACA
ACTGCTTCATATAGATTAACAACATTTAAACCAGTTGTCTCAACTGATGC
ACCTTTAGTTGTTACAGATGGTAAAGACACCACTCCGAGCTCTGAAGAAA
CTACTCCAAGCTCTGAAGAAACCACACCTAGCTCTGAAAAAACGACTCCA
AGCTCTGAAGAAACCACTCC
Run BLAST on NCBI

transcript from alignment at scaffold_58:1254517..1254936-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071050 ID=TCONS_00071050|Name=TCONS_00071050|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at scaffold_58:1254517..1254936- (Clytia hemisphaerica)
AGATGCTCCTTTAGTTTCTACAGATGGTCAAGAAACAACGCCAAGCTCAG
GAGAAACAACGCCAAGTTCAGGAGAAACTACTCCAAGCTCTGAAGAAACA
ACACCAAGTTCTGAAGAAAAAACAACTGCTGCAAGTGGATCAACAACATC
AAAACCAGTTGTCTCAACATATGCTCCTTTAGTTTCTACAGATGGTCAAG
AAAGCACACCAAGGTCTGGAGAAACTACTCCAAGCTCTGAAGACAAAACA
ACTGCTTCATATAGATTAACAACATTTAAACCAGTTGTCTCAACTGATGC
ACCTTTAGTTGTTACAGATGGTAAAGACACCACTCCGAGCTCTGAAGAAA
CTACTCCAAGCTCTGAAGAAACCACACCTAGCTCTGAAAAAACGACTCCA
AGCTCTGAAGAAACCACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044141XLOC_044141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071050-exon-scaffold_58-1575043694:1254517..1254936TCONS_00071050-exon-scaffold_58-1575043694:1254517..1254936Clytia hemisphaericaexon
TCONS_00071050-exon-scaffold_58-1510915933:1254517..1254936TCONS_00071050-exon-scaffold_58-1510915933:1254517..1254936Clytia hemisphaericaexon
TCONS_00071050-exon-scaffold_58-1491911889:1254517..1254936TCONS_00071050-exon-scaffold_58-1491911889:1254517..1254936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1254517..1254936 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118155	0.163964	0.216338	0	0	0	0	0	0.359396	0.613983	0	0	1.38943	0.366235	1.40284	0.646459	0.423412	0.166319	3.33039	5.96898	1.34278	0	0	0.573624	0	0	0.173861	0	2.60314	2.18111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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