TCONS_00071020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071020
Unique NameTCONS_00071020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071020 ID=TCONS_00071020|Name=TCONS_00071020|organism=Clytia hemisphaerica|type=transcript|length=3778bp
AGAAAATAAACATGAGTCGAAAATGGCTGCTGGAAATTTTGATGATTGCA
CCacagaattttgaaaatgatatgaTTTTACAAATGATTTTGGCTTTCTT
ATCAGGCAATTCACTGTTTGGATGTGTAACATAAATGGCAGGTAGAAGAC
TGAGGCAATTTTTTACTGGGAGAAGGGGCAGTCAAAATGGAGACAGACCT
TCCAATGAAGAGGACGACGCAACTGCTCAAGGTGAGCAACAACTCAGTCA
AGTTGAGCAACAGCTTGGTCAAGTTGGATTAGATGATCAATCATCAAATG
ATGCTCCTGGAGCTGTCGGAGGCCCACCTATTGTTCCTGCTGGAGCATCT
TCCGGAAATGGAGCAGTAGCAGGAGGTTCTGGAGGTGCCATTGGTGGTGA
CGGAGTCTACACAACTAGCAAAGAGATGTACGATAATAGTACAGACTACA
TTGTAGCATCTTTAGCAGAGGGAATGGTACCTAATGAGGACCAGAGTGGA
TTCTCTTTCCAAATAGAACTAATCAAACGGCTGGAGAGGTTTCTTATCCT
TGGTACAGAGGGAAATACTTACTATGCAAGTGAAAAAGACAGAACATATG
AAAACATAAGTTGTATAAATGAGCTCTTAGAAAAAGGAGAAGTGGATAAG
GTTTTGCACATTCTCAAAACATTTAGTGTTCAAGGGAGATGTCCAAAAGA
GGAACCAATCCTGGTTGCTTTGGTGCAATGTTGTTATTTCCAAAATGCTG
AGATCCGTAAGAAGGCTTATGATTTAGTTAGTCCAATTTGTAATATACCA
ACAAAGCTGTTTAGATTCATTGAGCTTTGTCAGCAAAACGTCAATCAGGA
AAGAACAGCTAAGAAGCATTTAACAGAATTACCAAAAGAACTCAAGAAGA
ATCCTCTAAAGCAGAATccattaaaaaggaaaaaagaacctATGGAATCA
GAAGAATGCATAGAAGAAGCACCTGAttcaaaaaaagccaaaaagcagaa
gaagaaaaatagcCCTTTCAAATCTTATCACACTGACAAAGCTCGCTCCT
CAGGCTGGGGGCGCATGCGTAGGAGAGGGATATCTAGTTTTTATTGTGAT
AAGAATAAAAGTGCTGAACGGTTGCTGTATTTGTTGACAAAGTTTAAAAA
CCGAAACAATTGGAATCATCGGCAAGTTCTTGGTTATGCTCATCCAAAGA
TATCTAAAGATGATGATGAACAAGATGGCAAGAATTTGGTCCTGGCGTAC
TGCACCAGAGGCGTGGAAGGTTTTCAGAAAAAGCTAAACGAAATCAAGAG
AAGATCAGCAAATTGTTTGCCACAGAATGTGTCTCGTATTCAAAACTTTG
TTCAAATTCTTGAACAGGTCAGTAAGCTATCACCAGAAAATGAAGGTGAC
GAAGAGAAGCTATTGCAATTTTTACGTGGTTATGGCATTCGTGAAAGTGC
TGACGAGTTTGCAGTTGAAATTGCACTCCCTGGAGTCCCCCTCACTCCAC
CTCCACCATCATctggaaaagaaaaagcaaaaaattctAAGCAACCATTC
CAAGTTGTGCGAGAACATATACCAACTGCGTTCCTCAGTTCTGCAAAGGT
TTGGGAAGCATTGTTGCAAGACATGCCAATGACAGCTATGCTGCGAAACT
TGGGGAAAATGACTTCCCTTGGTTTGTTTCAGAAGCCCGAAAACTTGAAA
ATTGTATTGGACGCTTTAGGTGATACAAATCGTCTTCAGAAAGCAAGAAT
TCATCCCATTAAGCTTTTGATTGGGATGAAAGCGTATGAAAATGGTGCTT
CATTAAGTATGATGAGTTCTGTCACGAAGACAAACACAACAACATGGGAA
GCAaaccaagaaattttgaaaatcttggaTAAAGCCTTCTATAAAAGCTT
CAAGCAACCAGAAACGCAAGATGCATTTAGAACAGGGAAACGGTTTATGT
TGGCATTGGATGTCAGTGGTTCAATGACATGTGGTGGCTGTAATGGTTGT
GAACAGCTCACCCCCTCCATAGCTGCCACCGCACTCTCTATGGTCACATG
GAATATAGAAGAGCACGTGGAAATGGTGGCCTTTGGTGGTCGTTTGGAGC
GATTGGAAGATCATGGTTTACGCAAAGATTTGACCATCAATGATGCTTGG
AGGAAGATGAGTCGGATCAACTTTGGTTCAACAGATTGTGCGTTACCAAT
GAATTATGCGATAGACCGTAATCTTGATATTGACGTCTTCATTGTTTACA
CCGATTCCGACACCAATTCATATAATCATCCTCACAAAGCATTGCAAAGA
TATCGCGAAAAGATGGGTAAACCTAACGCTAAACTCATCGTGATCGCCTT
GACATCCAATGGGTTTTCTATCGCCGATCCTAACGACCGCCACATGCTGG
ATGTTGTTGGCTTTGATCCAGCTGTCCCTGAGATGATCTGCAATTTTGTT
AACGACAGTTATTGAGCATACCACTCATAACATTGGAGTCTTTCTCGGTG
GCTTGAGTGATCTCAGTACCACTGGACTcttttttgaaatcgaaagctgT
ACCAAACTATGGGCTCATTAACCTTGACAGTTTAGGCATTCTTACCTGAG
TTGTGCGGGATTCGATTGAGAAGCATAAGAATCTATAAAAAGAGTCATAA
GGCAGGGAACAAACAATGATATTTCTTGTATAGAAGTAGTTTACATAGAA
TGCTACACGTTGAGGAGCTGGAAACGAGTGTTGCATTCTTTccaaaattg
acgtcacttCAATAAACAATGAAATTTCATATACTGTACATACATGCTTG
CATGGAATCATTTAATTAAAGTTTTATATTTcatcttattttattttaaa
caaaCTATAACatcattttagttttttaccaatttaatttcttaaaatat
tgcattgagtttgaaggtcttctttcaaaatttagtcaatatattctcaa
cttcagttgagctacaatctgacaatgtctgtgtgtctgtgtgtctgtct
gtcacaaaaactttagggcagcctggagacttcaaaaatggtcggatttg
tcTGAAATTTGGCatacttgttccttgggtgaatatatgggggtgttttt
ttcttttttcaaaaattttgatttttggggcctgggaacgaatttttcgt
caaaacgaggctaaaactttgggacagcctggagacttcaaaaattgttc
aattTGGCTGAAagtttgcacacttgttccttgggtgaatatctgatggc
gtttctttcatttttcaaaaattttgatttttggggcctggggacgagtt
tttcgcaaaaacgaggctaaaactttggggcagcctggagacttcaaaaa
tggtcggatttgtctgaaattttgcacacttgtacCCTGGGTCAATATCT
GGaagcatttattttcatttttcaaaaatcttgatttttggggcctgggg
aagAGTTTtccgccaaaacgaggctaaaactttagagcAGAGTCTACATG
Cctcaaaaatggttggatttggctgaaatttggcacacttgttccttggg
tgaatatctgggggtctacgattgggcctatgaataatttgaagacactg
aagttgagcccagtgcgttgcgcacgttcgactatattATACACAACTTT
ATATATTACTTTTATTGTGATtcgatttctttcaaaaatcaatttctttt
gtaaataaCCGTCATCAATATTgatattgtttttgtttgtgaactatttt
tataatctttgaaataatatatcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_58:1036892..1044664-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071020 ID=TCONS_00071020|Name=TCONS_00071020|organism=Clytia hemisphaerica|type=transcript|length=7773bp|location=Sequence derived from alignment at scaffold_58:1036892..1044664- (Clytia hemisphaerica)
AGAAAATAAACATGAGTCGAAAATGGCTGCTGGAAATTTTGATGATTGCA
CCACAGAATTTTGAAAATGATATGATTTTACAAATGATTTTGGCTTTCTT
GTAAGTTTTAAGTATTTTCATGTAAGTTTACCTATTTTATTTTTGTCTAT
TCTTTATAAAAATTTACTTTACAGTACCCTAACTATTTTGAAAGTTTTGC
AGAAGAAGGAAAAAAAATGAATGAAACAGTAGCATAGTCATAAAAATAAT
CAACAAAACAAAATAAAATTTTATACAGATCAGGCAATTCACTGTTTGGA
TGTGTAACATAAATGGCAGGTAGAAGACTGAGGCAATTTTTTACTGGTAA
GTTTATTTATTTTTAATGAGTCAATGGGCTATATTCCAAAAAAAGATTAC
ACTGCAACAGGGGAGGGGGTCGTCGTTTGTATAAGTAGGAACTAGTAGTA
ATGACTCGTAACGTACCGGAACAACCCAGAGCAACCCAGAACAACCCAGA
ACGACCTAAGAGCCACCACTTTTGGTCGGCAAAGAATTCGCTAAGTCTTT
TTTCCGCCACGTATTACGCTCAAGCGCAGTTACTACAGAACAGTGTTGTG
TTGAGTTTAACTGATAATACTGAGGTAAGCATGCCAGAATAATCAATCAG
AATATTTCAACCAATCAGATTTCGTATTTTCACCAGCCTATTACATTTTT
CGTCCGTCGTCGTGATTATTCTGGTATACTTAACCCCAGTAGTTTCTCGT
TCTAGAGCAAATCCGATATTTTTTGTCTGCCTAGCTTTCGGGTTAGCCTG
TAGAAAAGTGCCGTAGCGCGAACGAAGGCTTCGTTCGTCCGCCGTCCTGA
ATTATCTACCTCACTAAGACCACTAATAGCTGTACTTCAAAGGGCGACAT
TCCATCTCTCTTCCACAGACCTGTATAGCCCCCGATGAGGGCTAGACACT
TGACTAAAATCATGCAATTTCACCCATTTGAAAGATGTGAAATAGCGTTT
GCCGCCTTCTTTCTTGATCTTGCGCACTGAAAACAATTAAAATGCTAGAT
CCTATCCATCGGCATAAAATTTAAAAAGTCAATTTTTTTTGCTGGAGAAA
GCTTTAAGTTGCCTATCTAGCCCTTCGACTTTTCAGATCTGTGCTCTCTC
CCCGATGGGTGGAATATTGGCGCTTTGTCCGTACCCGTGGGCGGAACAGA
CCACCTTGGTCGTTCTGGGTCGTTCCGGGTCGTTCTGGGTTGTTCCGGTA
CGTTACGGGTCATTACTACTAGTTCCTATTTATACAAACGACGGGAGGGG
GCACGTATAGACTTTTTTGCCATATTGAATTGTATGCAAAAATTATGGTG
TCCGAATTGCCTTGGTGAGATTGTAATTAATTTTCCCACCGGACGATGTA
CGATGGTGTTTTTCTACCGCTTTTGGACTGCTCGTAAAAACGTGTGTCCC
TGGTCAACTGCAGTCTTTACTTCGTAGGTCGGGCGAGGACGAATCTTGAA
AGAGCGCAGAAGTGTTATATGGCGTCATATGAGTCAAAGGCGGCTACGGA
TGAGTACAGTGGGAATAAATCTTTGAGGAATAGCTCCCATCATACATTGT
ACGGTGAAGCCCCCGTATCTTGTACGGACGGTGGTCAAAATAGGTTAACT
TGTTCCCACTTTACGCCCACTGGAGAACACCGTACAATGTACGGCAGTGT
CCAGGGTCATGAACACAACCACAACATTAGACATAAACTAAACCTGAAAA
ATCACCAGCGAAGTTAAAAAATAATCCTTATTCGGCTGACTGTAAATTAT
TCTCCTAGGGAATAGAACCATCAAATGATCAAATAAAAATATTGATCTGA
ACCCCCTGATTTACTGGGGCTTTTACAATGTCTTACACTTGACATGACAG
GGGTTTTCTTGCACAGGAAGATAAATTTCCATCAGATGACATCTTATGAG
GATTTCTATATTTTTAAAGGGCAAGGTTCTTTAGAAACTGGCTGAAAGTG
TGTTTTTCGGAAAAAAGATTTTGGTTGTAGAAATCAGATTTTCTTTTTGG
GGAAATTCCCTGTTTTGTCATTTTTCAAGCTTCATCATTCATGTTTTTCA
AGCTTATGTATCTAATGCTATCCCTGTCATCTTTTCTCTTTTTTTCGAAC
ATCATCTTTATTCAGCATGTTTCTTCATTACTATCTTATCTCAGGAAGGT
CCATTCAGCATGTTGCTTGTTCATTTTATAACATTTTACACCTGTTCCAT
ATTCTCCCTAAGGGTGTCCTGTAATTATCCCAAATGTTCTGAGTCTTTAT
GCAGGACACCTTTGAGATGAATTTTAAAACAATAAACTAAATTTCTTGAA
TGTTTAATGACCATATTTTGGCAAATTTTAATATTAAAAATCGAATTTGG
ATNATGAATGTGTAATGACCATATTTTGGCAAATTTTAATATTAAAAATC
GAATTTGGATGTCTAGGTAGGATAAAGTAATGTCCAAATAAGTCAAAAAC
GTCCTGTAGTTGCTCCAGTTGACTTTACATATCCTCGTTGGTAAGATTTT
GTCTCTTAGTAATGTTTCTACTGTTTGATTTTTTCTCCAGATATACATGA
AAGTTTGTGTCAAATAGCACCTCTTATTATTAGATTCTTATTCACTTTAA
GATAAGATTGTACTGTTGAAGGATTTTATATAAAACATTTGAGTAGGTTC
AGCTTATAGAGACTCTAGTGTAACCTCTAGAGGGTGGACTTCTCCCAGTG
GCTGTAACTTAAGAAATGAAAAACTTTTAATGATTGATCAATTAAAAACT
ATATTTCTTACTTTCCTACTTCTATAATAAGTTCTTGTTCCTTATTTCAC
TACTATTAGTTCAGTACTAATCATCATCATCATCATCATCATCATCACAG
GCCATATTTTAGAAAAGCAAGACAGCTTCTGTTGGAGGCCAAAAAGGGCA
CTTTTTCTTATTATGTTTTTCCACTAAAAAGGCTGTTTTTATCAAAATTT
TAGTAATTTCAAGAGGGGCAGCGTCCGATAACTGAACGCTTAAAGGGCAT
GAAAAATGGCCTGCATCATCTTTCGACATACGTCGGAAAATTTGCGTAGC
GTTCCTTCAAAATACTCGATCTTGCATGACTGTCTTTATTTCCTCAATCT
CGAGACCTGTTTCCCTCTTCAGAGTATCCAGGAAGGTTAACTTCTTTAAT
CTTACTAGACCCGTTGGTGACCAGAAAAGAAGTCTGAATATCATTTCTTC
TTTTGCTCAAAAACAGTGGCCTGCAAACTGAAGTCTTCTATTGGTGAGGA
TACGTGAGATCCTTGGTAGATTATTGCATATTTGATTGAGGTACTAATAT
TGCATAGATCAAAAAGAGCCTTGTATGGTTATGTATCTCTTCCACTGGAA
TATGACATTAAAATAATAAATGAATTTACATCTGTTCATTTAGGGAGAAG
GGGCAGTCAAAATGGAGACAGACCTTCCAATGAAGAGGACGACGCAACTG
CTCAAGGTGAGCAACAACTCAGTCAAGTTGAGCAACAGCTTGGTCAAGTT
GGATTAGATGATCAATCATCAAATGATGCTCCTGGAGCTGTCGGAGGCCC
ACCTATTGTTCCTGCTGGAGCATCTTCCGGAAATGGAGCAGTAGCAGGAG
GTTCTGGAGGTGCCATTGGTGGTGACGGAGTCTACACAACTAGCAAAGAG
ATGTACGATAATAGTACAGACTACATTGTAGCATCTTTAGCAGAGGGAAT
GGTACCTAATGAGGACCAGAGTGGATTCTCTTTCCAAATAGAACTAATCA
AACGGCTGGAGAGGTTTCTTATCCTTGGTACAGAGGGAAATACTTACTAT
GCAAGTGAAAAAGACAGAACATATGAAAACATAAGTTGTATAAATGAGCT
CTTAGAAAAAGGAGAAGTGGATAAGGTTTTGCACATTCTCAAAACATTTA
GTGTTCAAGGGAGATGTCCAAAAGAGGAACCAATCCTGGTTGCTTTGGTG
CAATGTTGTTATTTCCAAAATGCTGAGATCCGTAAGAAGGCTTATGATTT
AGTTAGTCCAATTTGTAATATACCAACAAAGCTGTTTAGATTCATTGAGC
TTTGTCAGCAAAACGTCAATCAGGAAAGAACAGCTAAGAAGCATTTAACA
GAATTACCAAAAGAACTCAAGAAGAATCCTCTAAAGCAGAATCCATTAAA
AAGGAAAAAAGAACCTATGGAATCAGAAGAATGCATAGAAGAAGCACCTG
ATTCAAAAAAAGCCAAAAAGCAGAAGAAGAAAAATAGCCCTTTCAAATCT
TATCACACTGACAAAGCTCGCTCCTCAGGCTGGGGGCGCATGCGTAGGAG
AGGGATATCTAGTTTTTATTGTGATAAGAATAAAAGTGCTGAACGGTTGC
TGTATTTGTTGACAAAGTTTAAAAACCGAAACAATTGGAATCATCGGCAA
GTTCTTGGTTATGCTCATCCAAAGATATCTAAAGATGATGATGAACAAGA
TGGCAAGAATTTGGTCCTGGCGTACTGCACCAGAGGCGTGGAAGGTTTTC
AGAAAAAGCTAAACGAAATCAAGAGAAGATCAGCAAATTGTTTGCCACAG
AATGTGTCTCGTATTCAAAACTTTGTTCAAATTCTTGAACAGGTCAGTAA
GCTATCACCAGAAAATGAAGGTGACGAAGAGAAGCTATTGCAATTTTTAC
GTGGTTATGGCATTCGTGAAAGTGCTGACGAGTTTGCAGTTGAAATTGCA
CTCCCTGGAGTCCCCCTCACTCCACCTCCACCATCATCTGGAAAAGAAAA
AGCAAAAAATTCTAAGCAACCATTCCAAGTTGTGCGAGAACATATACCAA
CTGCGTTCCTCAGTTCTGCAAAGGTAAATGTTAGTTAACAATGATAACAC
TGATAGACTTTTATTTTATCACTTTTTAGATATGCCACAGTTATCATAAT
AATTAAGAGATTATTTTAGATTGTAACTTTAAAATTAAGATTAATTTAAT
ATTTTAGATTCCACCTAAAATGATAAATATTGAGTGAGTCATCCATTCAT
TTTTGTTGTTCTCTTAGGTTTGGGAAGCATTGTTGCAAGACATGCCAATG
ACAGCTATGCTGCGAAACTTGGGGAAAATGACTTCCCTTGGTTTGTTTCA
GAAGCCCGAAAACTTGAAAATTGTATTGGACGCTTTAGGTGATACAAATC
GTCTTCAGAAAGCAAGAATTCATCCCATTAAGGTTGGAGTCAATTTATCT
TACCTTTCCACTTAGCAGTTGATTACAATCAAGTCAGCTGATTCAGTTAT
TATTTTTGTGTCCATTTTTATGATTCTCATTGTAAGTTCTTCTTACATTA
CATCTCTTCGTAATGCTAAACAACATTTCTTCACTTTCAGCTTTTGATTG
GGATGAAAGCGTATGAAAATGGTGCTTCATTAAGTATGATGAGTTCTGTC
ACGAAGACAAACACAACAACATGGGAAGCAAACCAAGAAATTTTGAAAAT
CTTGGATAAAGCCTTCTATAAAAGCTTCAAGGTAATAAGATTGTTTTTTC
TTTCAATGCTGATGTTATGGTGTCAGAATGCTGTGATATAGATTGAAATT
TTCAAACATGAAAAGCAAAAACTTCCTGAAATTTTAAAAATCTATGTCTG
CTATTATAAGTGATATCTGCTAATTTTCTCCTTTCAGCAACCAGAAACGC
AAGATGCATTTAGAACAGGGAAACGGTTTATGTTGGCATTGGATGTCAGT
GGTTCAATGACATGTGGTGGCTGTAATGGTTGTGAACAGCTCACCCCCTC
CATAGCTGCCACCGCACTCTCTATGGTCACATGGAATATAGAAGAGCACG
TGGAAATGGTGGCCTTTGGTGGTCGTTTGGAGCGATTGGAAGATCATGGT
TTACGCAAAGATTTGACCATCAATGATGCTTGGAGGAAGATGAGTCGGGT
ACTGGTTATCATATTTCAGAGAATATTCTTAAATTCGTTCCAATCGTCTA
TTTTACAAGACCTTTCCAACTCTAAAGTAGAGAAAGAATTCAAGTCTTCT
GGGCTATTGAAAAAAAAAACTTTTTGGACCCATCTTTTTTACATTCAACA
AATGCTCCAGAAATTTTTTATGTTGCGTTGTTTAATTGATTCGATATTGT
TTTGTTTCAGATCAACTTTGGTTCAACAGATTGTGCGTTACCAATGAATT
ATGCGATAGACCGTAATCTTGATATTGACGTCTTCATTGTTTACACCGAT
TCCGACACCAATTCATATAATCATCCTCACAAAGCATTGCAAAGATATCG
CGAAAAGATGGGTAAACCTAACGCTAAACTCATCGTGATCGCCTTGACAT
CCAATGGGTTTTCTATCGCCGATCCTAACGACCGCCACATGCTGGATGTT
GTTGGCTTTGATCCAGCTGTCCCTGAGATGATCTGCAATTTTGTTAACGA
CAGTTATTGAGCATACCACTCATAACATTGGAGTCTTTCTCGGTGGCTTG
AGTGATCTCAGTACCACTGGACTCTTTTTTGAAATCGAAAGCTGTACCAA
ACTATGGGCTCATTAACCTTGACAGTTTAGGCATTCTTACCTGAGTTGTG
CGGGATTCGATTGAGAAGCATAAGAATCTATAAAAAGAGTCATAAGGCAG
GGAACAAACAATGATATTTCTTGTATAGAAGTAGTTTACATAGAATGCTA
CACGTTGAGGAGCTGGAAACGAGTGTTGCATTCTTTCCAAAATTGACGTC
ACTTCAATAAACAATGAAATTTCATATACTGTACATACATGCTTGCATGG
AATCATTTAATTAAAGTTTTATATTTCATCTTATTTTATTTTAAACAAAC
TATAACATCATTTTAGTTTTTTACCAATTTAATTTCTTAAAATATTGCAT
TGAGTTTGAAGGTCTTCTTTCAAAATTTAGTCAATATATTCTCAACTTCA
GTTGAGCTACAATCTGACAATGTCTGTGTGTCTGTGTGTCTGTCTGTCAC
AAAAACTTTAGGGCAGCCTGGAGACTTCAAAAATGGTCGGATTTGTCTGA
AATTTGGCATACTTGTTCCTTGGGTGAATATATGGGGGTGTTTTTTTCTT
TTTTCAAAAATTTTGATTTTTGGGGCCTGGGAACGAATTTTTCGTCAAAA
CGAGGCTAAAACTTTGGGACAGCCTGGAGACTTCAAAAATTGTTCAATTT
GGCTGAAAGTTTGCACACTTGTTCCTTGGGTGAATATCTGATGGCGTTTC
TTTCATTTTTCAAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCG
CAAAAACGAGGCTAAAACTTTGGGGCAGCCTGGAGACTTCAAAAATGGTC
GGATTTGTCTGAAATTTTGCACACTTGTACCCTGGGTCAATATCTGGAAG
CATTTATTTTCATTTTTCAAAAATCTTGATTTTTGGGGCCTGGGGAAGAG
TTTTCCGCCAAAACGAGGCTAAAACTTTAGAGCAGAGTCTACATGCCTCA
AAAATGGTTGGATTTGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAAT
ATCTGGGGGTCTACGATTGGGCCTATGAATAATTTGAAGACACTGAAGTT
GAGCCCAGTGCGTTGCGCACGTTCGACTATATTATACACAACTTTATATA
TTACTTTTATTGTGATTCGATTTCTTTCAAAAATCAATTTCTTTTGTAAA
TAACCGTCATCAATATTGATATTGTTTTTGTTTGTGAACTATTTTTATAA
TCTTTGAAATAATATATCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044130XLOC_044130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071020-exon-scaffold_58-1575043694:1044565..1044664TCONS_00071020-exon-scaffold_58-1575043694:1044565..1044664Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1575043694:1044319..1044386TCONS_00071020-exon-scaffold_58-1575043694:1044319..1044386Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1575043694:1039792..1041221TCONS_00071020-exon-scaffold_58-1575043694:1039792..1041221Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1575043694:1039433..1039597TCONS_00071020-exon-scaffold_58-1575043694:1039433..1039597Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1575043694:1039134..1039274TCONS_00071020-exon-scaffold_58-1575043694:1039134..1039274Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1575043694:1038717..1038977TCONS_00071020-exon-scaffold_58-1575043694:1038717..1038977Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1575043694:1036892..1038504TCONS_00071020-exon-scaffold_58-1575043694:1036892..1038504Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1510915933:1044565..1044664TCONS_00071020-exon-scaffold_58-1510915933:1044565..1044664Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1510915933:1044319..1044386TCONS_00071020-exon-scaffold_58-1510915933:1044319..1044386Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1510915933:1039792..1041221TCONS_00071020-exon-scaffold_58-1510915933:1039792..1041221Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1510915933:1039433..1039597TCONS_00071020-exon-scaffold_58-1510915933:1039433..1039597Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1510915933:1039134..1039274TCONS_00071020-exon-scaffold_58-1510915933:1039134..1039274Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1510915933:1038717..1038977TCONS_00071020-exon-scaffold_58-1510915933:1038717..1038977Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1510915933:1036892..1038504TCONS_00071020-exon-scaffold_58-1510915933:1036892..1038504Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1491911889:1044565..1044664TCONS_00071020-exon-scaffold_58-1491911889:1044565..1044664Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1491911889:1044319..1044386TCONS_00071020-exon-scaffold_58-1491911889:1044319..1044386Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1491911889:1039792..1041221TCONS_00071020-exon-scaffold_58-1491911889:1039792..1041221Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1491911889:1039433..1039597TCONS_00071020-exon-scaffold_58-1491911889:1039433..1039597Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1491911889:1039134..1039274TCONS_00071020-exon-scaffold_58-1491911889:1039134..1039274Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1491911889:1038717..1038977TCONS_00071020-exon-scaffold_58-1491911889:1038717..1038977Clytia hemisphaericaexon
TCONS_00071020-exon-scaffold_58-1491911889:1036892..1038504TCONS_00071020-exon-scaffold_58-1491911889:1036892..1038504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1036892..1044664 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.71006	3.47796	5.22554	5.57137	8.20131	6.39042	11.4254	14.8969	6.44233	9.49437	7.15578	5.64341	10.9947	8.43261	7.44755	6.42208	5.37589	5.30455	7.19262	7.89858	10.6476	11.7956	5.64953	7.03198	10.4997	12.0672	10.418	10.3655	6.51802	5.45889
Blast
[Close]
BLAST of TCONS_00071020 vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.809e-66
Identity = 166/454 (36.56%), Postives = 235/454 (51.76%), Query Frame = 3 
Query: 1107 KSAERLLYLLTKFKNRNNWNHRQVLGYAHPKISKDDDEQDGKNLVLAYCTRGVEGFQKKLNEIKRRSANCLPQNVSRIQNFVQILEQVSKLSPENEGDEEKLLQFLRGY-GIRESADEFAVEIAXXXXXXXXXXXXXXKEKAKNSKQPFQVVREHIPTAFLSSAKVWEALLQDMPMTAMLRNLGKMTSLGLFQKPEN--LKIVLDALGDTNRLQKARIHPIKLLIGMKAYENGASLSMMSSVTKTNTTTWEANQEILKILDKAFYKSFKQPETQDAFRTGKRFMLALDVSGSMTCGGCNGCEQLTPSIAATALSMVTWNIEEHVEMVAFGGRLERLEDHGLRKDLTINDAWRKMSRINFGSTDCALPMNYAIDRNLDIDVFIVYTDSDTNSYN-HPHKALQRYREKMGKPNAKLIVIALTSNGFSIADPNDRHMLDVVGFDPAVPEMICNFVND 2456
            K    L   +TK+K RN W+H+ +L  +H K S      +G  +V  Y T+G     K+++E+ +  A                      LS E E    KLL++L     ++ + DE  V                      +  +  ++VREH+ T  L S +VW+ALLQ+MP+TA+LRNLGKMT+  + + P N  + +V + L +   L+KARIHP  +LI ++ Y+ G  L             W  ++EILK LD AFYK+FK  E      TGKRF+LA+DVS SM          L  S  A A+ MV    E+   +VAF    + +    +  D+T+      MS+I  G TDC+LPM +A   N   DVFIV+TD++T +   HP  AL+ YR+KM  P AKLIV  +TSNGF+IADP+DR MLD+ GFD    ++I NF  D
Sbjct:  159 KGGMALALAVTKYKQRNGWSHKDLLRLSHLKPS-----SEGLAIVTKYITKG----WKEVHELYKEKA----------------------LSVETE----KLLKYLEAVEKVKRTRDELEV---------------------IHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLE-PGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR--------GKLKWRPDEEILKALDAAFYKTFKTVEP-----TGKRFLLAVDVSASMNQRVLGSI--LNASTVAAAMCMVVTRTEKDSYVVAFS---DEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLD 536

HSP 2 Score: 92.4337 bits (228), Expect = 4.393e-19
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 3 
Query:  492 QSGFSFQIELIKRLERFLILGTEGNTYYASEKDRTYENISCINELLEKGEVDKVLHILKTFSVQGRCPKEEPILVALVQCCYFQNAEIRKKAYDLVSPICNIPTKLFRFIEL 827
            Q G+ +Q+  + RL RFL  G+EG TYY  E+    EN   +  L+E G   +V+  +K+FS +GR  K+EP+L AL  C    +   ++ A+  VS +C IPT LF FI+ 
Sbjct:   20 QDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEALIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCRIPTHLFTFIQF 131
The following BLAST results are available for this feature:
BLAST of TCONS_00071020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RO602.809e-6636.5660 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G... [more]
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