|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007108 ID=TCONS_00007108|Name=TCONS_00007108|organism=Clytia hemisphaerica|type=transcript|length=1056bp
GAAAGGGAAGATGTCAGATAGCGAAGAAAGCGGTCCAGAAGCTGGTGACT
GGGTGAATTATCCTGAAGGTGATCCAGCCGACGATTTCGAGAAAAAATCT
CTTGGACAACGAGCATCTCGCAACAACGGCAAGTACACACGAAAGACCAC
TGAAAGAAGAGGTACAAAATGTCAGAATAAACGAACAGAAAAGTATTACG
ACTATAAAGAGAAAGACAATCGAAATGGTAAAACAGTGGTCCAGTACAAA
CATGCTTACAAAGAAAAAGGAGTACAAATCGAGAAGGGTTCAATGAATCC
TACAAAAATGGATGCAGCACAGGGGGTGGCAGGTGCCTGGATAAACGTCT
CCGATAATCTGGCCCTCATGGAGAACAAAGCTTTCAAAGACTCAACCGTG
GGAAAGAGCACTCAAGTATCAGCCGCTTCAGCAAATGCAAGCACCAAAAC
GAAAGGGAAAGATAATGCTTTTGACCCCTGTGCAAGAGCATCGGCCTCCG
CGGGAAACGCTGGAGCTTCGTGTGGGGCTTCAGGCACTGGTTTATATGCA
TATGCTGGAGCGAAAGCTTCTGGCGCAGAGGCGTCGGCTTCAGCCGCTCT
TATCGACGGCGTCGTTGAGGTTGGGGCAAGTGCCGAGGCCGCAAGCGCCA
AAGCTAGCGCTAGTGCCACTGTTTTAGGAGTCCATGCTGGAGCAGATGCT
AAAGTGGCCGGCGTTTCGGCTGGAATGAGCCACACACCTTTACAAGCTGA
AGCATCCGTCCTTGGAGCTGGGGCGGAAACTGGAGTCGGTTGGGAGTACA
CTGGCGCTTCAGCAGGCGCTCATTTGGCGGAAGCGAGAGCGGGGCCGTTT
GGTGTACGCGCTGGTGTAAAGTTCGGAGCTGGAGTGCGAAATGGTGTCCC
TGAAGTTGACTTGGGTCCCGTAACTGTCCCATGCTGTGTCATGTGAAATG
GTTTGAAATAAATGAGCTTTCCATAAAATTCTGAATTGTGACACACTGCC
AATTAACCCATTGGCTTGATTATTCgtattttttaactttgtttcGTTCG
GTTGCC Run BLAST on NCBI protein sequence of TCONS_00007108-protein >TCONS_00007108-protein ID=TCONS_00007108-protein|Name=TCONS_00007108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
KGKMSDSEESGPEAGDWVNYPEGDPADDFEKKSLGQRASRNNGKYTRKTT
ERRGTKCQNKRTEKYYDYKEKDNRNGKTVVQYKHAYKEKGVQIEKGSMNP
TKMDAAQGVAGAWINVSDNLALMENKAFKDSTVGKSTQVSAASANASTKT
KGKDNAFDPCARASASAGNAGASCGASGTGLYAYAGAKASGAEASASAAL
IDGVVEVGASAEAASAKASASATVLGVHAGADAKVAGVSAGMSHTPLQAE
ASVLGAGAETGVGWEYTGASAGAHLAEARAGPFGVRAGVKFGAGVRNGVP
EVDLGPVTVPCCVM Run BLAST on NCBI transcript from alignment at sc0000073:289705..290760 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007108 ID=TCONS_00007108|Name=TCONS_00007108|organism=Clytia hemisphaerica|type=transcript|length=1056bp|location=Sequence derived from alignment at sc0000073:289705..290760 (Clytia hemisphaerica)
GGCAACCGAACgaaacaaagttaaaaaatacGAATAATCAAGCCAATGGG
TTAATTGGCAGTGTGTCACAATTCAGAATTTTATGGAAAGCTCATTTATT
TCAAACCATTTCACATGACACAGCATGGGACAGTTACGGGACCCAAGTCA
ACTTCAGGGACACCATTTCGCACTCCAGCTCCGAACTTTACACCAGCGCG
TACACCAAACGGCCCCGCTCTCGCTTCCGCCAAATGAGCGCCTGCTGAAG
CGCCAGTGTACTCCCAACCGACTCCAGTTTCCGCCCCAGCTCCAAGGACG
GATGCTTCAGCTTGTAAAGGTGTGTGGCTCATTCCAGCCGAAACGCCGGC
CACTTTAGCATCTGCTCCAGCATGGACTCCTAAAACAGTGGCACTAGCGC
TAGCTTTGGCGCTTGCGGCCTCGGCACTTGCCCCAACCTCAACGACGCCG
TCGATAAGAGCGGCTGAAGCCGACGCCTCTGCGCCAGAAGCTTTCGCTCC
AGCATATGCATATAAACCAGTGCCTGAAGCCCCACACGAAGCTCCAGCGT
TTCCCGCGGAGGCCGATGCTCTTGCACAGGGGTCAAAAGCATTATCTTTC
CCTTTCGTTTTGGTGCTTGCATTTGCTGAAGCGGCTGATACTTGAGTGCT
CTTTCCCACGGTTGAGTCTTTGAAAGCTTTGTTCTCCATGAGGGCCAGAT
TATCGGAGACGTTTATCCAGGCACCTGCCACCCCCTGTGCTGCATCCATT
TTTGTAGGATTCATTGAACCCTTCTCGATTTGTACTCCTTTTTCTTTGTA
AGCATGTTTGTACTGGACCACTGTTTTACCATTTCGATTGTCTTTCTCTT
TATAGTCGTAATACTTTTCTGTTCGTTTATTCTGACATTTTGTACCTCTT
CTTTCAGTGGTCTTTCGTGTGTACTTGCCGTTGTTGCGAGATGCTCGTTG
TCCAAGAGATTTTTTCTCGAAATCGTCGGCTGGATCACCTTCAGGATAAT
TCACCCAGTCACCAGCTTCTGGACCGCTTTCTTCGCTATCTGACATCTTC
CCTTTC Coding sequence (CDS) from alignment at sc0000073:289705..290760 >TCONS_00007108 ID=TCONS_00007108|Name=TCONS_00007108|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000073:289705..290760 (Clytia hemisphaerica)
TCACATGACACAGCATGGGACAGTTACGGGACCCAAGTCAACTTCAGGGA
CACCATTTCGCACTCCAGCTCCGAACTTTACACCAGCGCGTACACCAAAC
GGCCCCGCTCTCGCTTCCGCCAAATGAGCGCCTGCTGAAGCGCCAGTGTA
CTCCCAACCGACTCCAGTTTCCGCCCCAGCTCCAAGGACGGATGCTTCAG
CTTGTAAAGGTGTGTGGCTCATTCCAGCCGAAACGCCGGCCACTTTAGCA
TCTGCTCCAGCATGGACTCCTAAAACAGTGGCACTAGCGCTAGCTTTGGC
GCTTGCGGCCTCGGCACTTGCCCCAACCTCAACGACGCCGTCGATAAGAG
CGGCTGAAGCCGACGCCTCTGCGCCAGAAGCTTTCGCTCCAGCATATGCA
TATAAACCAGTGCCTGAAGCCCCACACGAAGCTCCAGCGTTTCCCGCGGA
GGCCGATGCTCTTGCACAGGGGTCAAAAGCATTATCTTTCCCTTTCGTTT
TGGTGCTTGCATTTGCTGAAGCGGCTGATACTTGAGTGCTCTTTCCCACG
GTTGAGTCTTTGAAAGCTTTGTTCTCCATGAGGGCCAGATTATCGGAGAC
GTTTATCCAGGCACCTGCCACCCCCTGTGCTGCATCCATTTTTGTAGGAT
TCATTGAACCCTTCTCGATTTGTACTCCTTTTTCTTTGTAAGCATGTTTG
TACTGGACCACTGTTTTACCATTTCGATTGTCTTTCTCTTTATAGTCGTA
ATACTTTTCTGTTCGTTTATTCTGACATTTTGTACCTCTTCTTTCAGTGG
TCTTTCGTGTGTACTTGCCGTTGTTGCGAGATGCTCGTTGTCCAAGAGAT
TTTTTCTCGAAATCGTCGGCTGGATCACCTTCAGGATAATTCACCCAGTC
ACCAGCTTCTGGACCGCTTTCTTCGCTATCTGACATCTTCCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007108-exon-sc0000073-1491911889:289705..290760 | TCONS_00007108-exon-sc0000073-1491911889:289705..290760 | Clytia hemisphaerica | exon |
| TCONS_00007108-exon-sc0000073-1510915933:289705..290760 | TCONS_00007108-exon-sc0000073-1510915933:289705..290760 | Clytia hemisphaerica | exon |
| TCONS_00007108-exon-sc0000073-1575043694:289705..290760 | TCONS_00007108-exon-sc0000073-1575043694:289705..290760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:289705..290760 . |
Blast
The following BLAST results are available for this feature:
|
