TCONS_00071106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071106
Unique NameTCONS_00071106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071106 ID=TCONS_00071106|Name=TCONS_00071106|organism=Clytia hemisphaerica|type=transcript|length=419bp
GTTTCAATTTTCCTTCAAGTTTTCTCAAGTGGAACTAATGAGCAATAAAG
CAGAGAGCATCATCATCATATTTTACTTCATTTGGCATGTcgttaacata
atttaaaaaatattaatgcATGGTTTAAGGAGGGTTCCCTGAGGCATTCC
AGAAATAACAGGTGAGGAATTAGATGATTTACCACAAATGAACATGTTGA
GATCAATTTGAAAGGAAATCTGTAATCCAAGACAAAATGTTTCCATCAAC
ACCTGTGTACATTTTAGCTTGATGATCAAACTTTATCAAACACCTTGCAC
CTTCTTGTTCTTTAAAGTCGATGGCTTTTGCATTAACGGTTTGGAGTACA
AGAAAAAGctttttgttgttctttttccCCTCTTCTGATGATTTTAACAA
ATTCATGGTAAATCCTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_58:954589..955007

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071106 ID=TCONS_00071106|Name=TCONS_00071106|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at scaffold_58:954589..955007 (Clytia hemisphaerica)
GTCAGGATTTACCATGAATTTGTTAAAATCATCAGAAGAGGggaaaaaga
acaacaaaaagCTTTTTCTTGTACTCCAAACCGTTAATGCAAAAGCCATC
GACTTTAAAGAACAAGAAGGTGCAAGGTGTTTGATAAAGTTTGATCATCA
AGCTAAAATGTACACAGGTGTTGATGGAAACATTTTGTCTTGGATTACAG
ATTTCCTTTCAAATTGATCTCAACATGTTCATTTGTGGTAAATCATCTAA
TTCCTCACCTGTTATTTCTGGAATGCCTCAGGGAACCCTCCTTAAACCAT
gcattaatattttttaaattatgttaacgACATGCCAAATGAAGTAAAAT
ATGATGATGATGCTCTCTGCTTTATTGCTCATTAGTTCCACTTGAGAAAA
CTTGAAGGAAAATTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044188XLOC_044188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071106-exon-scaffold_58-1491911889:954589..955007TCONS_00071106-exon-scaffold_58-1491911889:954589..955007Clytia hemisphaericaexon
TCONS_00071106-exon-scaffold_58-1510915933:954589..955007TCONS_00071106-exon-scaffold_58-1510915933:954589..955007Clytia hemisphaericaexon
TCONS_00071106-exon-scaffold_58-1575043694:954589..955007TCONS_00071106-exon-scaffold_58-1575043694:954589..955007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:954589..955007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.337883	0.823724	0.191284	0.748568	0.227827	0.360064	0	0.406682	0	0.176341	0	0.112514	0	0	0	0.102948	0	0.12999	0	0	0	0	0	0	0.181385	0	0.92661	0.988903	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top