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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070859 ID=TCONS_00070859|Name=TCONS_00070859|organism=Clytia hemisphaerica|type=transcript|length=1080bp
GTTCAAAGATGAAAAGCATGCGATTGGTCAGATAAGAAGCTGGACTTAAG
AGAAGCCAGTTGGAGTTTTTTTCTTACACCTGATCACCAACCTTTTGTCA
TCTCATTAGCAAGACGCTATACAAATTCTTTATCCCAAACCACGACCAAC
ATTTCTCCTAACCGATCAAAACACAGCTTTTAACCACGTGACAGGCTGGc
catttcaaccaatcagatcaCACTATTGGTCGGTTCCAATCTCTTTGTGT
GTTTTCTCCGgaacttctttttctttgttgatgatgtctgaaatttttgt
ttcgaGGGAAATGATGAGAGGATGAAAGATGATTTCCTGAACTAAAATTT
TTTCCTGAATTCTTTCTTGAATTAACCCAATTTTGCAGCTAGCTTCTTAT
GATAGTTCATTAATGGAAATGAATTATTTGATTGCTTGAATGAAAGTTGG
TGATGGGTTGGTTCATGGGGAAACAGTGTCTTCTTTTGTTTGTGATGGCT
GCAGGCTTGGTTGCCATGGCAATGCGATGGGGATTGGagaaaacctgaaa
aacaaaatattaaattaagGGTTCGTATCCTTCAGACTTGCTGGCCAACC
TTTTGTGTCCATGTTGCTCATTGGTTCAAGATGCAAGgGAGATCGAAGCC
CACGCTACACCACCCCCTGCAGTCAAAATAATTCGTCAATAACTGGAGGA
GATATTTGGGGAAGAAAACGATATATTAATGATTTATTTACTATCTTTTC
ATTGACGCACACACGAAATTGTTTATATATAAACTTAaataatgtaaaaa
ataaatttcgtaTTCAATATATGTACATTTggttttaaaaaataattata
acttctaaaaagatatttggtTTAATTCTTTCCAAGAAAAAACTTCATTG
CGATACAATGCACTGTATAATGTTCAACCAAAGCTCTTCGATGGGATCTA
TCGGTATTCGAATGAAGATTCAGAACTTCTCTCAAAAAATGATATCCACT
CCACCTCTGATCATTCTAAAAATTCTCTCAACGCAGATTTTCCGTCCTTG
AGTTGAGAGGTGATGAGTATAAGGTGAACT Run BLAST on NCBI transcript from alignment at scaffold_58:934168..943866+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070859 ID=TCONS_00070859|Name=TCONS_00070859|organism=Clytia hemisphaerica|type=transcript|length=9699bp|location=Sequence derived from alignment at scaffold_58:934168..943866+ (Clytia hemisphaerica)
GTTCAAAGATGAAAAGCATGCGATTGGTCAGATAAGAAGCTGGACTTAAG
AGAAGCCAGTTGGAGTTTTTTTCTTACACCTGATCACCAACCTTTTGTCA
TCTCATTAGCAAGACGCTATACAAATTCTTTATCCCAAACCACGACCAAC
ATTTCTCCTAACCGATCAAAACACAGCTTTTAACCACGTGACAGGCTGGc
catttcaaccaatcagatcaCACTATTGGTCGGTTCCAATCTCTTTGTGT
GTTTTCTCCGgaacttctttttctttgttgatgatgtctgaaatttttgt
ttcgaGGGAAATGATGAGAGGATGAAAGATGATTTCCTGAACTAAAATTT
TTTCCTGAATTCTTTCTTGAATTAACCCAATTTTGCAGCTAGCTTCTTAT
GATAGTTCATTAATGGAAATGAATTATTTGATTGCTTGAATGAAAGTTGG
TGATGGGTTGGTTCATGGGGAAACAGTGTCTTCTTTTGTTTGTGATGGCT
GCAGGCTTGGTTGCCATGGCAATGCGATGGGGATTGGagaaaacctgaaa
aacaaaatattaaattaagGTAAGGAAActtatttctcaaaaatctccaA
ATCTGAATCTCCAACACCGCCTTGCTTGAAAATCACCAAATGAACAAACT
TGCCAcaataaaatttgaaacattgaaattttcaaacctCTTTTAGGCCA
CTCTAGGTTGTAATAAGACATATTGTACATTTTAAAACAACTTTCATCGA
AGAAatagaaaggttggtttttaaatatttacttGAGTCCAGAAAAGAGA
GATTCGGATTCGACTACAAGATAATAGGCGGAAGATGTAAAAAGGATCAC
TGCTTATAATATTTAACACAACTACATTAAGATTTGTTATGTAAAACAAA
CATTCACCGACCTGTATATAGTAATTGAAAGTCACGATATATAGACATCA
TCGTCTGTCAGGCTTGCTAAGACCCACCTTGTACCTCTGAAAATNCTTGA
GTGCTTGAAAGTCACGATATATAGACATCATCGTCTGTCAGGCTTGCTAT
GACCCACCTTtacctttgaaaataaaaagagtCATCGATTTAAATAAGAA
ATCAAAGCAGTTCTTAGATGCCAGTGTAATATACCAGGTTATTcgacaaa
aaactgaaaaatattggATTAATCATATTTTCTTTGTACcagaatatcaa
aacaaacccaAAAACTTCGTGACATTAAATACTCGAATCACTTGGAGCAA
AGAAAATTCGAATTGAataggagaaataggaaaattccaactttttaccc
caaaaaagatcgaaatttggtcaaaattgatcaaatttgtcccggtaagg
gtcgtaCAATCCACAaagttttcctttgttttctccttttcagTCCCGGT
AAAGGTCCAAGGGTCGAAAGttgggcggcacccccccccccccccccccc
cccccccccccccccgcccccccccccccccaccNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCC
CCCCCCTCCCTCCCGGGAATTGAATACAAAGATTTTTAATCCAGAGATAC
TGAGACAGGAGTGTAAAAATAATAAGGCCattaagaattgaaaaaaagtt
ttcacgtTCTCTGTGtcacaaagaaaataaatttttgttttcttcaatTC
GAGCAAAAATAAACCTACGGATTAGACGTAAACTAAACCTACAGAAAATT
TGGAGgccaatttaaaatttctttgacttttttttgcagACTgagtgttc
ttaacattttatcTTGAAGTCTCTCAATTCCTTGTCGCTAATATACTGTT
GTTACTTTAATCCTGGACAAGGTTTGAGTAAATCTTAATGAGGGATAGTT
CAAGGAAAAGATTATTTGGGTGCAAATTTGGAAAGCTCTGTTGGCCATTT
TCGGATAGAATATTACAAATTCAGAAACTAACGCGTTCAAAATTCATTTG
ACTTGCAAcccaataatttcttcaaaGATGGTTTCTTAAAGACGACTATT
CAAAACATTGAagtaaatatcattttttttgcttgaattcatagattttt
agtatattttccAGAAATGTAGAGGCCTACATTTTCAATTACCCCCTCag
gcttgtgaattaaaattgataagtAAGCAAACTACATCActctcatttaa
aaacaaaacctttaatgaaGTCTAAAATGATGATTTGATTATTATGTATC
Tcgaatactttaatcggattaattttcgcgatttcgcgaatttttgccat
tttcgcgaaattaaaactcgcgaacacgcgtgagattcctgattcgcgaa
attaaatccaccacacaAAACTTTTAgaattgtatttttggcggagaaac
tagttccaagtctccatttatggcaaaaaatggctattttcagctgtttt
ctagCTTAGtcgcgaaatatttcaaaactctgactcgcgaaattaaatcc
agaaaatttcgcgatttttttagctcgcgaaatttaatctcgcgaaattt
aatccggttGAAGTAACTCATGTTTTTCATGctgaagatgttcttaattt
ccaAACACTCCCTTCTCACTGACTGGGAACTCTTCCCACTGGAGatattg
gccaaaatttccatcccatggtaaaaaaaaagaagcaatggaattcaaat
ccccggccataaaaaacataggaatatcaatccccatcgagttttcgTCG
ATAAAATTCCaccgggtctgcgagaagggggtgtattaaactaatttttt
ttatctcaaatAATTCATGTTTTTCATGCTTAAGAGGTTCTTAATCTCTA
AAAAGCACATTTAGGTGAATTATGTGGGTTACATTAAAATGTTGAGCGAT
TGAAATAGCTAAAAACCACAGTCTAGTTCTCTGATTATTGAAGATAACTT
CTGAAGATGAGTTCTGAAGATTTCTATATCCAATAGCTGCTAGAAAATCC
ATGAATCTATGAATTCCATCAGTGAAGGCAAGGGCTGGCTGAATCTGACC
AGCATTTTAGGGGCCCTTGCATTTGGATTAcaagatttgaaaatttaagt
GGGAAtcaccaaaatatttttcattcgaTAGAACTTGATACTTTTTCGAA
GAATTTTGTTTAAGTTTTGCTGAATCATGTATAGGCAGTGCATGGCAGAT
AATCCATTTTGAGTCCGGATATTTTTTATtgagtacactttttttataag
aataaactatagaAGAGCATAGGGCTTCGATGGAATAAATATCAGCATTT
AAGCTTTGCATAACACCTGTCTTAGTTAAATGGAtagaaatactcacaaa
atcgacgaaaatggtgaaaataagaatttagtttggttttgtgtattttt
gttgaaaagacaaTTCCGAGTGGAAGCTTcttaagtaaaaataattcgaa
aaaagacaggcttaaaattttttggatgttcCTATGAAAAAAACTTGTAA
GTCTAATATTGAGAACCCGGAGGTTCATCTTCTCAAACGCTCTGAGTGTT
ACATAAAagcaaaattgtaaaaaaaatcactttaaggGTAACTTTTTCAC
TTAAGTTCCAATCTTGAGGGTCAAGTGCGCTCGTACCCGACATTCTCCGA
CATAAGCAGCCCCGAATATCAGGGAAAGTGGTTACCAATAGTTACCAATA
TTGTCCACGCCACTCAAGTTGTCccaacgaattttcaaattACTATAGCC
TttcatttaaaagttttgcAGCCCCTGTCCGGCGGAATTTGAGCAACTTC
TATCTTCTAGGTGGGAAAATATCACATTTCTTGGAAAGATCAAATAGCAT
AAAGTTCCAAccgttttttctttttgtcttgTCTCCATAAGATTAACCTT
GGTTGcatgaaaagagaaaaaaagctTTGACTTCCTGTCTATCTACTTTG
AATGAAGATCATcaaatagttatttttctcaatttcaaaGGTGTGTCACA
CGCTTGAGTTTAATGAAATGGTTCCTCCCCCTATGATAAAAATACTTCGT
TAAACTACACCCTCATCTGTTATTACCGGGTGGTTCAGAAAAAACATGTc
gaaacttattttttaaattacacaaagagttttttatgtttttcgttTGG
TCGATTTTAACcccataaaataaaatatggAAATTCTTATAAATGCCTGA
ATTTTGTTATAACctaaaacaataaaatcaaaagCGTCTACCATACCAAG
ATAATCTGTTTGGTAATTATTATGTCATATCCTTTTTACTTAAGACTAAA
AAATTCTAacttagtctacacaatagacagctccaggcttttaggccttt
ctcttggtctataggcactgctagtAACCCTCACCGggaacattcacaaa
agatgtttatcaatagagatttcaaataaaagaatgtttaaaactcagct
gattggcttaagtttcgaaactctctattgtttcattaaaaccttagtac
gcatgcgatttatccggagaatttcaatactcaaaacaagagcagtgctc
atatcccggAGAGTTGGAGTTTCACGCCCGAAACGAAGAAGATCATGACG
TAGCCTATTCTAACTGGGCCCTTTTTacctaaaactaaaaaaatttctAA
CTGGGGATGTAATAAAATTTCAGAAGCTATAAGCGATTTTTCACAAGATG
TTGTTGCACTATGTAGCCTagcattttactacttttttcTCCGTTTTTAC
Tgaaaaaaacagaagaaaaaaaaaaaacttgttatttctgtgttgaaaaa
gaaaagttactgATTAGCGAAACCAGTCAAAGAAGttcaaaaaactgtta
attGGGATTTCAGATCACACTTCATTACCATGTTTCGTTGTCATGGTAAT
TCTTCGTTTCATGAAATACAGCTTAAGATTTAAACTTCCCTTTTACATTG
GAATAGGCAACGAATAACTTAAgttgaaaaatcttgaaatggctgaattt
caattcaatttgttgGACTGTTCAGAAGATTTAGGGACTTGCTCACGGAC
CTTTTTATGCCCGTGCGTGACGGCGGGAGAGAACGCCAGGGCCGTTGACA
AATCTTGCTTTTTGTTTGGTTTGATGTCAGTTCTTCCACTGTGTATGTTT
ACGAATGGTCACGTGAGAAAACTCATTCGACACAAATATAACATCAAGGT
AATTCCATTGATCCAAACCCTTAGATGGGAAATGAAGGCCAAAACGCGTG
ACCAACTTGGCTTTCACACAACTTGAAAGTAAAACTTATtgctagatttc
gaaaaatatccCGCTAAACTTTTTCTTGgttgagaaaggttaaaggttCC
TCTCTAGCTCTTTCGGGGCTTAAGCTCAATGGCTGATTCTTTTTAACCTG
GATTATTGAATGACTCAAAAAAGAGGTCAAATTTATGAACCTTTGAGTTT
GTTAGAAATAGGTGAAAATCTTTTCATATGCTGCTATGTGTTCGTTGGAA
GGATAATTATGAGTTATTTATTGAATTATACTTTTTCAATACGAAAATGT
AGAGAGAAAACGCCTTATAAAAATACATGTTAATCTAAATAAAGCATTtg
ccaaaaaatatttcaacttgATCAAAGAATATTCAATGTTCAAATGTTTG
TGGCTTGACTTAATGAAGGAAGCTTTCCAAAAGCTTATCTTCCTGATCAC
GTTCGGCGTTTCGtttctttgataaaaaatcttcttttcctGGGGGAAAA
TAATTGTCTAAGCCAAGTAAAGGATCATTTGCCAAAGGTGGAAAATATTC
TGAAACCAGCAAATCGTCTTTTTGTTGAGATGGCAGGTAGACGTCCGAAG
GGTCGTTTTGAGGTGGGATGTATCCTGAAACTAGCAAATCGTCTTTTTGT
TGAGATGGCAGGTAGACGTCCGAAGGGTCGTTTTGAGGTGGGATGTATCC
TGAAACTAGCAAATCGTCTTTTTGTTGAGATGGTAGGTAGACGTCCGAAG
GGTCGTTTTGAGGTGGGATGTATCCTGAAACTAGCAAATCGTCTTTTTGT
TGAGATGGCAGGTAGACGTCCGAAGGGTCGTTTTGAGGTGGGATGTATCC
TGAAACTAGCAAATCGTCTTTTTGTTGAGATGGTAGGTAGACGTCCGAAG
GGTCGTTTTGAGGTGGGATGTATCCTGAAACTAGCAAATCGTCTTTTTGT
TGAGATGGCAGGTAGACGTCCGAAGGGTCGTTTTGAGGTGGGATGTATCC
TGAAACTAGCAAATCGTCTTTTTGTTGAGATGGTAGGTAGACGTCCGAAG
GGTCGTTTTGAGGTGGGATGTATCCTGAAACTAGCAAATCGTCTTTTTGT
TGAGATGGTAAGTAGACGTCCGAAGTGTCGTTTTGAGGTGGGATGTATCC
TGAAACCAGCAAATCTCGGTATTCCAGTTCAGGAAGAACGTCACTTTCTt
ctaaaaatacaaagaaatcaaattcaTCTTCAATCACAATCAATGAGGTG
GGATATTGTGATAATGAGAAAATACTTCAAGAAAAAAAGCTATAATGGAC
ACATTTTATTGGTTAAATAAAACTCAACAAAATACCTTTAAGTGGAAACC
CATAAAGAGCATTCCATTGAAGCGCCAAAGTGATCAAAATGAGTCGCATG
TCCATCATGAATAATAGCCGAGTTTAAGTGGTATGGATGTTCTTCCCCCA
CTTAAGTTATATCCTTGCAACTCGGTGGTTTTTCATGAAAAGCTATTACG
TTTGTTTTGCTGTCGTGTAAAATAAACACCATACACAAAATCTTTTCTCT
GTCAAAAGTGGCAGCCATTATTATGTTGAACATTGAATGAAAATTCTTCC
TACTTCCATCAGATAAAAGATTGTTTTGTTTATCGCAATGTCGTGTAAAA
CACACACCAAATTACATATTTATTTTCCGCTCAAACTGAAGCGCACCTCG
gtttttcaaaaagagtttCGTTTGTTTTTTGGATGAGTTAACAATCAAAT
TCAATAgtgcacccccttctcacagaccattGAAATTGATAgacatttga
aaataatgaaataaaccaatcctcactgcaaaacatTTACTATCTTTCTC
ATCTCCActcgattttctttttttaaaacaaaagaattgaaatcttgatt
gataaaaaatatgagaatatcaatccccatcgagtttcagtctgttTTTT
TCATCCCTACTGCTACTGGCTGTCCttccgggtctgtgagaagggggtgt
actaGTGCAATCCTAAAAGTCGCCTTTCTTGAGTTGTCTATGGCGGGATT
TCGTTAGTTTAGGAAAACCTTCCTTAGATACCAGAAACACCAGGAGGGtc
tttttctgtttattttccTACGTAAACACGTAACACGTTTTTGATTGGAG
GAATCCTCATGAAGAAACACGTAAGATGTCGAAATATCATTCATAGTAAA
AATGGAGAAAAGGAGAGTGTCAAAACTAAAAAGCTCTACTAAAAAAGCGG
AAGAAAATACGTCTGCAttggaaaaactattttttatgTTATTAACCTTT
ATGAACTTTATGaacctacaatcatggacataaggtctgtagacttttca
aaaattcctcaATAGTGccaaaaaaaagcctttttgacGCTTGGGAAATT
TCCCAAATGAACCACAAGTGGTTATTTGGCAGAAAACACCTACAGGCTTC
CTAACACTCCATGTAGCTTTTAGTCCTTgtgatttttggacttttttggt
GCACCAGACAGCTCTGAAaagttgtttactttttattaaaCCATCTCAAA
TATGGTCTAATTAGATATCTTCTCGAATAAGTTGAAGAGCAAAGCTCAGT
GAAACCTTCAATCTTAGACAAAAAAAGGTCTGAAGAACTTGCAAAAATTC
ATTTCCTTCAATCTTGAGTGGATTTGGCTTATGGACTTGTTACCCAAACT
CTCCAAATCCGATAAAAACAACATTGGCTCtggtaaaaatgggttttcag
ggcttatttggaatttttttatgcatttttgaaaagtctacaacATCCTT
TTGTCCGTTACTATTGTACTCCTTTTTTCTATGAGAACTAGTAAATCTTT
ATGACGCTCAGTTGTTCTTATGGTTGTCatgtttctatttctataaGTTT
TAATAGCCCTAATTTGACCCTTAATCGTGCTTAGTCTGCTTAGAACTCAG
TCATTCCAGGTTCAGCAATGTCcttattttcgttttttttagcCTCATTG
TTTTcgtaaaattgttcttacaatATAAAGAATTTAGTTGGAGTAGGGGG
AGTAAATCAAATTCTTTCATCTATTCTTTTAATTGGAGTATGTCAGAATC
TTTTAGTCTTAGGTTTTGACAAAAACAAACATGTTCCTATTAAATTTATT
ACCAACAAACGTAGGTATGATATTACAAATTGCGaacaaaatacacgttt
tttataagaacaaactatgtaagaacatgaggcttcgatgatcaaaatgt
taagaacaagttaagaacattgtagggcttcgcggactcgaaaacagcca
atttattaggaaaataaacaaaaattacatgaaaaatggggaaaataaga
acatttctagacttgaaactcaaaaagttaagaacatccgaaggcttcag
aaattttggatgAACGCGTCATCTCTTCTCTCACCTTCATCTTGTGTTTC
TCTTCTCTTGTTCAGGGTTCGTATCCTTCAGACTTGCTGGCCAACCTTTT
GTGTCCATGTTGCTCATTGGTTCAAGATGCAAGggtaacatgtttttttc
ttttctgttcaTTTTTTCTACTATCTGGAACGAAAGAAGAGGAACAAATT
GTTTTCTTTCCTAGACTTTTGCAACTGCTCAGATAAATTCCCAACTATTT
TTATTAGAATATGAGGCCCACtggaaaaggtttttttattcaacgctgta
atagaccttttcataaattacgttaggaacatcacttgcctcgttttgaa
attattgtcaaGGTGATTAACTCTCAGcgaattttattaaaactaccttt
attcataaaaaaaacatttaatgtctcaagggacataatcaccatgtcaa
ttgtttgaaaacgaggcaagtgatgtttatgacgtaatttatgaaacggT
CTATTGTCATCACATTCCAATCCTCCTAACTATTTCTcaaaatgttgcat
tttttaGGAGATCGAAGCCCACGCTACACCACCCCCTGCAGTCAAAATAA
TTCGTCAATAACTGGAGGAGATATTTGGGGAAGAAAACGATATATTAATG
ATTTATTTACTATCTTTTCATTGACGCACACACGAAATTGTTTATATATA
AACTTAaataatgtaaaaaataaatttcgtaTTCAATATATGTACATTTg
gttttaaaaaataattataacttctaaaaagatatttggtTTAATTCTTT
CCAAGAAAAAACTTCATTGCGATACAATGCACTGTATAATGTTCAACCAA
AGCTCTTCGATGGGATCTATCGGTATTCGAATGAAGATTCAGAACTTCTC
TCAAAAAATGATATCCACTCCACCTCTGATCATTCTAAAAATTCTCTCAA
CGCAGATTTTCCGTCCTTGAGTTGAGAGGTGATGAGTATAAGGTGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070859-exon-scaffold_58-1491911889:934168..934736 | TCONS_00070859-exon-scaffold_58-1491911889:934168..934736 | Clytia hemisphaerica | exon |
| TCONS_00070859-exon-scaffold_58-1510915933:934168..934736 | TCONS_00070859-exon-scaffold_58-1510915933:934168..934736 | Clytia hemisphaerica | exon |
| TCONS_00070859-exon-scaffold_58-1575043694:934168..934736 | TCONS_00070859-exon-scaffold_58-1575043694:934168..934736 | Clytia hemisphaerica | exon |
| TCONS_00070859-exon-scaffold_58-1491911889:942933..943001 | TCONS_00070859-exon-scaffold_58-1491911889:942933..943001 | Clytia hemisphaerica | exon |
| TCONS_00070859-exon-scaffold_58-1510915933:942933..943001 | TCONS_00070859-exon-scaffold_58-1510915933:942933..943001 | Clytia hemisphaerica | exon |
| TCONS_00070859-exon-scaffold_58-1575043694:942933..943001 | TCONS_00070859-exon-scaffold_58-1575043694:942933..943001 | Clytia hemisphaerica | exon |
| TCONS_00070859-exon-scaffold_58-1491911889:943425..943866 | TCONS_00070859-exon-scaffold_58-1491911889:943425..943866 | Clytia hemisphaerica | exon |
| TCONS_00070859-exon-scaffold_58-1510915933:943425..943866 | TCONS_00070859-exon-scaffold_58-1510915933:943425..943866 | Clytia hemisphaerica | exon |
| TCONS_00070859-exon-scaffold_58-1575043694:943425..943866 | TCONS_00070859-exon-scaffold_58-1575043694:943425..943866 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:934168..943866 + |
Blast
The following BLAST results are available for this feature:
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