TCONS_00070990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070990
Unique NameTCONS_00070990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070990 ID=TCONS_00070990|Name=TCONS_00070990|organism=Clytia hemisphaerica|type=transcript|length=2496bp
ATTAACAATTTACCTTACCATTTAAATTCTTAGAATCAGTTTATGCCTAG
TagcaaattatttgaaaaattataaaaaatggaGGACATGGATTGGCTag
atgaaagtgaaaatttagaaaatgatttcaattctttgaaacataaacat
acaaagGATGGATTTCGTGAAGGAATTTCCCAGGGCCAAGATTACATTCT
CCAGACTGCATTCAACGAAGGTTTCAAATCATCtggcatatttttcgaaa
aactttCTCATTTCAGAGGGAAAGTCAGtgCGATATATATGTTTCTTATG
AATCAGCCTGCTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGAT
CACCAAGcttgaagattttgaaaataaccAAAGTCATATTGATGAAATAG
CTGCTCAGAATAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCAT
AAGAACACAAGGCATGATTCTATGGATAACACTACAATAGATACACTTAT
TGATGGCTTTGATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAGC
AAAAAGAACTTAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGCC
AATTCACCCCCCTCGAAAACACATGATACTAGTTATATTTACGAAAACTC
CCAGAACATCTTTGACAATAAATTAAAGGGAGATTTAGATGAACATATTG
GAACTATCAAGAATTTAATTGAACATGAAATGACTTTGATAATGACAAAT
TTTGATTCcgatacaaaaaatcaaattataaaatgtttaaaaagtattga
aaaatagGCATTGTTATTATTTCAAGACAAGACTTGCATTCCCATATAAA
TATAGCTAATATAAACAATGTTTGGTAATGTCGCTTTTATTGCCAGTGGT
GGTGAACAGTTTCTTGTCTCTAATACATAACAACACATGCcccttttcaa
tattttattatataCTTATCAGTTAATGAAGGTCGAAAACACATATaata
atttgttaaaaaaataaaccaCTTCTCTTGTGTTATTTACAtaatattcg
aatatttcttttgATCTTACTCAGAAACACGTAGTGCCGATTCTTCTCGG
AGCAAACCACTTATTTGTGCACTGTTTGTTTTCACAGATGTTTCATTGCT
TTGACATTAAAGGTCTAGTTCTCTAACATGTGTGTTTATTTTTTGCTACA
ACAAGCTTTAGAGCAAGCAGGTGCGCAAGTTGGAGCACAAGTTGGACCAC
ATGGCattggtggaggtggtggagctGGAAGGTTGATGACTGTTGGTGGA
AGGTTGACGTGTTGGCATGGTGGTGCAGCGCAAGGGGCTGGGGCTGGTGG
AGCACATGGTGGGGCGGCACATGGCATAGGTGGTGGTGCGCATGGTGGGG
CAGCACATGGCATAGGTGGTGGTGCACATGGAGGGGCAGCACATGGCATA
GGTGGTGGTGCACATGGTGGAGCAGCGCATGGCATAGGTGGTGGTGCGCA
TGGTGGGGCGGCACAAGGCATAGGTGGTGGTGCACATGGTGGGGCAGCAC
ATGGCATAGCCATTGGCATTGGTGGAGGCATGCATGGTGGGGCTGCACAT
GGCATGGGTGGAGGAGGTGGTGCGCAACAGCTTGGTCGGCAGGCGGGGTA
GCAAGCTCTTGGACATCCAGCAGGGCATGGTGGGGGAGCTCGAGCAGGTG
GTGGGAGAGCAGGTCTACAACAAGCTGGTGCACAAGATGGTTGACACATA
GGCATTGGTGGTGGTGGAGGAGGGGGCATGCAACATGCTGGTGCACATGA
GGGTTGGCACATAGGCATAGGGGGTGGAGGTGGTGGCATGCAACAAGCAG
GAGCACAAGAGGGCTGACAAGCTGGCATAGGTGGTGGGGCACATGGAGGT
GCAGCACATGGCATAGGCATAGGCATTGGTGGTGGGGCACATGGTGGAGC
AGCGCAAGGCATAGGTGGTGGTGCACATGGTGGAGCAGCACATGGCATAG
GTGGTGGGGCACATGGAGGTGCAGCACATGGCATGGGTGGTGGGGCACAT
GGAGGTGCAGCACATGGCATGGGGGGTGGTCGAGGTGGAGCGTTACAACA
CCCTGGCATAGCTTGACATTGTGATGGACAAGGCATAGGTGCAGCAGGTT
GTGCAGCGATCATGGATGACCAATGACTACAGATTGGTGCGCAGCCAAAG
GCTGGCAtaggtggtggtggtggtggtggaggtggtgcaGCGCAGCAGCT
TGGCTGGCAGGCTGGTGCACATGCGGCAGCACATCCCATTccacatgggt
ttgcacttctCTTCTCGATCTCtttaaaataagaaaacatGTTATTTATG
ATGATATTCAGAATTAATAATAAACAATGAAGTATTGCTTTTTTGTATTC
TCTCTCTCTTTCAGGttcagataaaaataaaaagtaaacaagaaagtcaa
atcaaaatgaaaaatgttgataGATGTACACTTACCAAGTTCTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_58:848100..851482-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070990 ID=TCONS_00070990|Name=TCONS_00070990|organism=Clytia hemisphaerica|type=transcript|length=3383bp|location=Sequence derived from alignment at scaffold_58:848100..851482- (Clytia hemisphaerica)
ATTAACAATTTACCTTACCATTTAAATTCTTAGAATCAGTTTATGCCTAG
TAGCAAATTATTTGAAAAATTATAAAAAATGGAGGACATGGATTGGCTAG
ATGAAAGTGAAAATTTAGAAAATGATTTCAATTCTTTGAAACATAAACAT
ACAAAGGTAAATACTTTTTTAAGAATTTTTGATTTTCTCTCAGTCTAAGC
ACTTTGTTGATTCAAGTTCATTTTGGAAGAAACAATGTCTTGTAAAAATC
AGTACCAATGATAAATAATCAATTGTATGTCTAGGCCTTCATGCTGCTTC
AGCTTCTTGTTTATATATGATGCACACTTCTTTATAAGATTAGTGTTTTT
TGGCTGATGGTGGAGCATTCTATCAAATCTATCAAAGATGTCTGATGAAG
TTTGCATAGAGTTTTCATATTTCACAAATAAAATGTGCTTTAATAACACA
ACATTACAGTAATTCTTTTGAAAAAATGTTATTTTATTATATAAGGATGG
ATTTCGTGAAGGAATTTCCCAGGGCCAAGATTACATTCTCCAGACTGCAT
TCAACGAAGGTTTCAAATCATCTGGCATATTTTTCGAAAAACTTTCTCAT
TTCAGAGGGAAAGTCAGGTAAGTTAATAACTATACAAACTATAAAGCTCT
TGAAAAAGACTTGATGATGTTACTGTTTTACTCCACTTTGTTTCTTCCCC
TTCCTCTGCCATGTATCTGTTTTTCAATTATTTATACTTCACATTAAATA
AATGGTAGCTGTATCAAATATTTGTTTATTTTGTTTGTTTTAGTGCGATA
TATATGTTTCTTATGAATCAGCCTGCTTTTGTGAAAGAAACCGGAGATCA
ATTTGAAGCTTTGATCACCAAGCTTGAAGATTTTGAAAATAACCAAAGTC
ATATTGATGAAATAGCTGCTCAGAATAACAGACGGAAGACAGAAGAAAGA
GACTTGGGAGGTCATAAGAACACAAGGCATGATTCTATGGATAACACTAC
AATAGATACACTTATTGATGGCTTTGATAATATGCAACCCCAAAATGATA
ATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGATGCAGTGACTGTAAT
TGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAACACATGATACTAGTTA
TATTTACGAAAACTCCCAGAACATCTTTGACAATAAATTAAAGGGAGATT
TAGATGAACATATTGGAACTATCAAGAATTTAATTGAACATGAAATGACT
TTGATAATGACAAATTTTGATTCCGATACAAAAAATCAAATTATAAAATG
TTTAAAAAGTATTGAAAAATAGGCATTGTTATTATTTCAAGACAAGACTT
GCATTCCCATATAAATATAGCTAATATAAACAATGTTTGGTAATGTCGCT
TTTATTGCCAGTGGTGGTGAACAGTTTCTTGTCTCTAATACATAACAACA
CATGCCCCTTTTCAATATTTTATTATATACTTATCAGTTAATGAAGGTCG
AAAACACATATAATAATTTGTTAAAAAAATAAACCACTTCTCTTGTGTTA
TTTACATAATATTCGAATATTTCTTTTGATCTTACTCAGAAACACGTAGT
GCCGATTCTTCTCGGAGCAAACCACTTATTTGTGCACTGTTTGTTTTCAC
AGATGTTTCATTGCTTTGACATTAAAGGTCTAGTTCTCTAACATGTGTGT
TTATTTTTTGCTACAACAAGCTTTAGAGCAAGCAGGTGCGCAAGTTGGAG
CACAAGTTGGACCACATGGCATTGGTGGAGGTGGTGGAGCTGGAAGGTTG
ATGACTGTTGGTGGAAGGTTGACGTGTTGGCATGGTGGTGCAGCGCAAGG
GGCTGGGGCTGGTGGAGCACATGGTGGGGCGGCACATGGCATAGGTGGTG
GTGCGCATGGTGGGGCAGCACATGGCATAGGTGGTGGTGCACATGGAGGG
GCAGCACATGGCATAGGTGGTGGTGCACATGGTGGAGCAGCGCATGGCAT
AGGTGGTGGTGCGCATGGTGGGGCGGCACAAGGCATAGGTGGTGGTGCAC
ATGGTGGGGCAGCACATGGCATAGGTGGTGGTGCGCATGGTGGGGCAGCA
CAAGGCATAGGTGGTGGTGCGCATGGTGGGGCAGCACAAGGCATAGGTGG
AGGTGCGCATGGTGGGGCGGCACAAGGCATAGGTGGTGGTGCACATGGTG
GGGCTGCACATGGCATAGCCATTGGCATTGGTGGAGGCATGCATGGTGGG
GCTGCACATGGCATGGGTGGAGGCATGCATGGTGGGGCTGCACATGGCAT
GGGTGGAGGAGGTGGTGCGCAACAGCTTGGTCGGCAGGCGGGGTAGCAAG
CTCTTGGACATCCAGCAGGGCATGGTGGGGGAGCTCGAGCAGGTGGTGGG
AGAGCAGGTCTACAACAAGCTGGTGCACAAGATGGTTGACACATAGGCAT
TGGTGGTGGTGGAGGAGGGGGCATGCAACATGCTGGTGCACATGAGGGTT
GGCACATAGGCATAGGGGGTGGAGGTGGTGGCATGCAACAAGCAGGAGCA
CAAGAGGGCTGACAAGCTGGCATAGGTGGTGGGGCACATGGTGGGGCGGC
ACATGGCATGGGTGGTGGGGCACATGGAGGTGCAGCACATGGCATAGGCA
TAGGCATTGGTGGTGGGGCACATGGTGGAGCAGCGCAAGGCATAGGTGGT
GGTGCACATGGTGGAGCAGCACATGGCATAGGTGGTGGGGCACATGGAGG
TGCAGCACATGGCATAGGCATAGGCATTGGTGGTGGGGCACATGGTGGAG
CAGCGCAAGGCATAGGTGGTGGTGCACATGGTGGAGCAGCACATGGCATA
GGTGGTGGGGCACATGGAGGTGCAGCACATGGCATGGGTGGTGGGGCACA
TGGAGGTGCAGCACATGGCATGGGTGGTGGGGCACATGGAGGTGCAGCAC
ATGGCATAGGGGGTGGTCGAGGTGGAGCGTTACAACACCCTGGCATAGCT
TGACATTGTGATGGACAAGGCATAGGTGCAGCAGGTTGTGCAGCGATCAT
GGATGACCAATGACTACAGATTGGTGCGCAGCCAAAGGCTGGCATAGGTG
GTGGTGGTGGTGGTGGAGGTGGTGCAGCGCAGCAGCTTGGCTGGCAGGCT
GGTGCACATGCGGCAGCACATCCCATTCCACATGGGTTTGCACTTCTCTT
CTCGATCTCTTTAAAATAAGAAAACATGTTATTTATGATGATATTCAGAA
TTAATAATAAACAATGAAGTATTGCTTTTTTGTATTCTCTCTCTCTTTCA
GGTTCAGATAAAAATAAAAAGTAAACAAGAAAGTCAAATCAAAATGAAAA
ATGTTGATAGATGTACACTTACCAAGTTCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044120XLOC_044120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070990-exon-scaffold_58-1575043694:851327..851482TCONS_00070990-exon-scaffold_58-1575043694:851327..851482Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1575043694:850866..850987TCONS_00070990-exon-scaffold_58-1575043694:850866..850987Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1575043694:849409..850689TCONS_00070990-exon-scaffold_58-1575043694:849409..850689Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1575043694:849211..849264TCONS_00070990-exon-scaffold_58-1575043694:849211..849264Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1575043694:848908..849174TCONS_00070990-exon-scaffold_58-1575043694:848908..849174Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1575043694:848560..848751TCONS_00070990-exon-scaffold_58-1575043694:848560..848751Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1575043694:848100..848523TCONS_00070990-exon-scaffold_58-1575043694:848100..848523Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1510915933:851327..851482TCONS_00070990-exon-scaffold_58-1510915933:851327..851482Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1510915933:850866..850987TCONS_00070990-exon-scaffold_58-1510915933:850866..850987Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1510915933:849409..850689TCONS_00070990-exon-scaffold_58-1510915933:849409..850689Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1510915933:849211..849264TCONS_00070990-exon-scaffold_58-1510915933:849211..849264Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1510915933:848908..849174TCONS_00070990-exon-scaffold_58-1510915933:848908..849174Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1510915933:848560..848751TCONS_00070990-exon-scaffold_58-1510915933:848560..848751Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1510915933:848100..848523TCONS_00070990-exon-scaffold_58-1510915933:848100..848523Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1491911889:851327..851482TCONS_00070990-exon-scaffold_58-1491911889:851327..851482Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1491911889:850866..850987TCONS_00070990-exon-scaffold_58-1491911889:850866..850987Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1491911889:849409..850689TCONS_00070990-exon-scaffold_58-1491911889:849409..850689Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1491911889:849211..849264TCONS_00070990-exon-scaffold_58-1491911889:849211..849264Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1491911889:848908..849174TCONS_00070990-exon-scaffold_58-1491911889:848908..849174Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1491911889:848560..848751TCONS_00070990-exon-scaffold_58-1491911889:848560..848751Clytia hemisphaericaexon
TCONS_00070990-exon-scaffold_58-1491911889:848100..848523TCONS_00070990-exon-scaffold_58-1491911889:848100..848523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:848100..851482 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.39708	4.48073	0.447043	0.637348	0.456925	0.310547	1.41411	1.05586	1.11147	8.03075	0.734402	2.82941	0	0	2.109	1.41687	4.51889	4.70312	0.876407	1.46718	1.57659	1.12044	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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