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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007060 ID=TCONS_00007060|Name=TCONS_00007060|organism=Clytia hemisphaerica|type=transcript|length=1345bp AAGTAAAGAATCTTCAAAGTATTTATACCATTAGTGACTATGGATTAGAT TGATGAAATGTCAAACAAATCAGGATGTTTAGTTTCTATAGTGATACCTG TCCATAATGGTAGCGCATTTATTGAGGAAGCTTTGGAATCAATCCTTAAA CAAAGTTGGAAAGAATCTCTTGAAGTATCTATATTTGACGATTGCAGTAC AGATGATTCTTACAAGAAACTTTTAACGTGGAAAGATAAGTTCGAAAATA ATGGAATACACGTTGTTTTGAGTCAGAGTCAAAATAATGAAGCAGGTGGA GTTGGGTTTGCCAAAAACTGTGCAATTTCACAATCGTCTGGCAATTTCAT TTGCTTTCTTGATATTGATGATGTAATGCACGAGAAACGTATTGAACTTC AATTATCAAAAGCCAAAGAAGATACAAACTTGATTGTTGGGTCTGGTTAT GTTCGATTGCCAGAAGGTTCAACTGTGCGTTATACAGAATGGAGCAATTC ATTAGCAGATTCCCAGTTACACACACAGATATATACCTCGTTTGGTCCCA CTATAATCAACCCAACTTGGTTTTgttcccgtgacattttcaaGAATACC GGTTATTTTAAAGAGGTTCAAAAAGGATTTCCTGAAGATCTTGAATTCTT TTATCGACATTTAGATAATAATGGGAAACTAGCGCTTGTCAAGAAACCTT TGCTGACTTATAGGTATCATTCAGCAGGGGCTACATTTTCAGTTCATGAA GATACAATATGGGACTTGCGAATGAAACAAATACAAAAGAACGTCATATC AAAATGGGGCAATTTCACTATTTGGAATGCTGGTAAACAAGGCCGTAAAT TTTATCGCTCCCTTGGTCCGGAGAATCGTGAAAAAGTATTATGTATGTGC GATGTGGATgagaaaaagatacaaaaagGAGTCTATACATGTGAAATGAT TAAAGGTGCCGATGGAAAACCATTGAAAGTTCCAATAGTTCATTTCAAAG ATGCTAGAAAACCATTCATTATTTGTGTCAAGCTGGGAATGTCGAATGGA GTATTTGAAGATAATTTGTCTTCTCTTTGTTTGGAAGAAGGaaaagattt ctttcattttaattgAAGATATAATTTCTCAATAGATGATTTTAGTTCTT ATCCAGGAATTTCCATCAGTGTTTTGTAATATAATTTTGTAATGGGATGA TTTTATTATATATCATTtcatctttctttctttttttctcgtaatGTTTA ATCAATTTCGAGGAACTGAACTTGTCATGGTCTAATTTGTATCATTGGGA ATTTTGGCTAAATTAAGTTATCAATTCAAAATGTCTATGTCTTTG Run BLAST on NCBI protein sequence of TCONS_00007060-protein >TCONS_00007060-protein ID=TCONS_00007060-protein|Name=TCONS_00007060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MSNKSGCLVSIVIPVHNGSAFIEEALESILKQSWKESLEVSIFDDCSTDD SYKKLLTWKDKFENNGIHVVLSQSQNNEAGGVGFAKNCAISQSSGNFICF LDIDDVMHEKRIELQLSKAKEDTNLIVGSGYVRLPEGSTVRYTEWSNSLA DSQLHTQIYTSFGPTIINPTWFCSRDIFKNTGYFKEVQKGFPEDLEFFYR HLDNNGKLALVKKPLLTYRYHSAGATFSVHEDTIWDLRMKQIQKNVISKW GNFTIWNAGKQGRKFYRSLGPENREKVLCMCDVDEKKIQKGVYTCEMIKG ADGKPLKVPIVHFKDARKPFIICVKLGMSNGVFEDNLSSLCLEEGKDFFH FN Run BLAST on NCBI transcript from alignment at sc0000073:67459..77340- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007060 ID=TCONS_00007060|Name=TCONS_00007060|organism=Clytia hemisphaerica|type=transcript|length=9882bp|location=Sequence derived from alignment at sc0000073:67459..77340- (Clytia hemisphaerica) AAGTAAAGAATCTTCAAAGTATTTATACCATTAGTGACTATGGATTAGGT
AGAAGAGTTTTTGTTTCTTTTTATCTTTTTTCTACTTGTAATGTCAGCTT
GTGAGCTTCTGAGAGGACAGACAGGATGCAGGTGAAGGGCCTGGGGATGG
AGAAGAATCGTTTTTTTTTAATAGACAGACTAGTCTTTTTACCTTAAATT
GTCTAAATAAAGCCCTAAACTGCTGCAATTATCTGATCCTTCAAATGTTT
ATTGTAAAACCTTCTAAATAAGCTGTTTAATAAAATCGCTTTAACTACTG
ATAACTACTTTGCAGACCAGAAAGTCTATGGCGGAAATAGACAGCTATAT
TCGACAACCGCACAACCGCCAAAAGGACCCTGTCGACGCACCGGACTCCG
GTGTATTTGTCCGGTGGCAAAAAGTATCCTTTCGCTACACCGGACGCAAT
AAGTCTGGTGTCAGTTCGGTGTTGCATACAGGGAATTTTGGACGCCGGAC
ATTTATGAAAAAAAAAATTAAGAAACACCGGACCCACCGGACTGGCCATG
TCCGGTGTTTTGATTGTCCGGTGGGAAAAATATCCTTCTCCGACACCGGA
CATCCGACCTCCTTAAGTCCGGTGTAGAAATTGTCCGGTGGTAAAAAAAA
TTCTCATTTTACATCAGACTTTCGCGTGTCCGGTGTTCGTTAAGTCCGGT
GCGTCGGCAGGGTCCTCCGCCAAAGCTTTGCTACAAAAAATTCAAAGTGG
AGTATTTTTTAGGTAAAAAATCCTTGAAATCCAGCATTTCCCTGGGGGGT
CTTTGATTAGCATTAAAACGAAAAATGCATAAAAGTGGCATTTTTTGCCC
ATTTTAAGGCTAAGAAAGGTCAGGAAAGGGTCAAAATGGTTTTTAAATGC
AACATAAAAAGACAAAATAATCCCATTAGCAGGTCACTCAATGTTGTTTC
AATTTTAGGCTAAAAAGGCTAATCTTCTCTGACTCTGAGTAGCAAAATGC
ATGAAAGCATCATCTTTGAGGTTTTGGCTAATATCTCAAAAGATTCATCT
AGGAGGAATGAAAAGAAGTTTGTGATTAAAAGGAGTTCTTTACCTACCAT
TTCTCTGCTTAGTTTCCTTACTTTTCCTAATTTTACCTATACCGTTTTTT
TACGGGGAGAGTGAAGTTTCCTGCAGTCCCTAAAATCAAAACAATGGAAA
ATTGTTTGGACGCGTGCGCAGTCGACACTACTAAACTGTGTACACATTGT
TTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATGCCTAA
AAACTAAGAAACATAAGAAACATGCTGAGGCTGAGAATGAAAAATGAGCA
TTTTTTAATTCGTTTTTTAAGAACCTTTCAATCAAGGTTCCAGAAATATA
CATATATAACAGTTAGAAACACTTGAGAAAGTCAGAAAATCAATATATAT
AGAAGATAGGAAAGTAGCGTAGATTAGTCAATTAGACTATTGTATTATCG
ACATGCGCCCTTTAAGCTTGACAAGGTTTAGAAACATGTAAGAAACATTT
AAGGCTCAAAAGGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAA
CCAGTTTCTTAAAAAAAAAATGTTTATTCAGAAGGGAAATTCCCTATGTG
ATTCCTTATTGACTCCCTTTGGAGCAAAGCTATTACCTTCTTTTAACAGG
GAGGAAAAAAGCCTCAACACTGCATGAGAGGATATTGGCTGATATATTTA
CAACACTGAAGTCTCATCCCGCAAATTCTATGTAAAAGTTATGAAAATGA
AAATGTGCCAAGTTGTTGTTACCTTATTGGCCCATTTTACACCAGTTGTT
TTTGAGTATGAAGTGGATTTTTAAAAGGCTAAAAAGTAAAACTGGTCAAA
TTTATGGACTTTTATTTCATTTTTGATATAAAAGTCCGTTAGAACCAGAA
GATAATTGTGTGTTGTGTTGTGTGCTCTTGAAATTTCTCCGCGATCCTAA
TTTAACAAGGTTGAATTTCTTGTGTAGGACGTAAGTGACCTAGCCCATGT
TGATGAAAGGAGCTATGGGAGTGTTTTGATTGACTAGTAAGAAATAGAAC
CTTGTTGTACTGGTTATATTAAGAATAAACTTTGATAGTAAATGAATTCT
ATAAAACCTTTTGGCACTGAAAAACAGTCAGCCGANATGTTAGGGGACCT
AGCACAAGACAATTTTTTTGGGGGAGCTAAATTGTTGGGGGGACCTTACT
TTGTTGGGGGGAGCTAGAAACCTGGCTGAAGCTATGTATACATAATATGT
GTATCAACTTCAAAAATAAAAACATTACTCGGCCTATTGAAGTAAGTCAT
TATGTTAATACATAATACATAATACATTTGTGCTGAAACCTCTTCTAGAT
ATCAAATTGAAAAGGAGACTTTACTGTAAAGTAAAAAAAGTAATAGAAGG
TTGGAAAAAACTGGAAAAGACAGATTGACCCCCTCCCCCAGTATGTAGGC
TTTCAAACATTTTCCCAAAGACCCCCCCCCCCCCCCNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGCAT
GAGAGGATATTGGCTGATATATTTACAACACTGAAGTCTCATCCCGCAAA
TTCTATGTAAAAGTTATGAAAATGAAAATGTGCCAAGTTGTTGTTACCTT
ATTGGCCCATTTTACACCAGTTGTTTTTGAGTATGAAGTGGATTTTTAAA
AGGCTAAAAAGTAAAACTGGTCAAATTTATGGACTTTTATTTCATTTTTG
ATATAAAAGTCCGTTAGAACCAGAAGATAATTGTGTGTTGTGTTGTGTGC
TCTTGAAATTTCTCCGCGATCCTAATTTAACAAGGTTGAATTTCTTGTGT
AGGACGTAAGTGACCTAGCCCATGTTGATGAAAGGAGCTATGGGAGTGTT
TTGATTGACTAGTAAGAAATAGAACCTTGTTGTACTGGTTATATTAAGAA
TAAACTTTGATAGTAAATGAATTCTATAAAACCTTTTGGCACTGAAAAAC
AGTCAGCCGATCAGAATGCTTTATTTGCTCAATTGAAAATCAAGTAATCA
GATAGAGTTGAAACCTTGTTGAATTAGGTGATGATTTGATAGACCAAAAA
ATCGACAAATTTTCATAAGGGACCATTAAAAAATATGTATGTTTTATATT
GGCAAAATGCAACCCCACCCCTTGTATGCTCTTGTATGCATTGATGGTAG
CCCTCTTCCTTTGCATATGCTCTTTTTCAATTACTCCACCCTCAACAAAA
TTATTTTCACTTTCAGGAATGGTGTTCCTAAAAGGTAGGGTACCCCAATC
GGGGCCCCAATTGGGCTACCTATTGGGGTACTCATTGATTTACAGACCAA
AATTAAATATTAACCAAAAATTTGTGGAGGAAAGTCATCTTCTAGGCCAG
AAGTTATGAATCTAAAAAATATTTCAATTAATATTGCATAATGCAGAAGA
TAGTTAAAGATACATAATTCATTTTGTCAAAGCACATGATGTATAATAGA
GCTTTGTGACGGGGTTCGTATATACATATACCATAGGTTCAGCCCCCCCC
TTATTTTTGGGGGGGGGGCTAAGAAATATTTTGGCCTTTAAAGAGCCTGG
GGGCTAAAATTACCAAAATATTTGGGGGGACCTAGATTGTTGGGGGGNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTCAGAGTTTGCGTA
CTTTTTGAATTGTCTCCAGGTTGTCTCTACTCCATGTAAAAAGCATTGTA
TCTTATATAGTTGTCCCTGTTATCTACACGGTCTAGGTGTTAGCTTTGGC
GATTTTGATGCATCCTTCATGTTATCCCAAATCCAATTTTACAATTTCAA
GAATTAGTCCACTTTCATTTTTCATTTGAAACATCCTTTTATGTCATGGT
ATATTTCTGTCTACCATTCCTTGGCTAAGGTTTACTTAGGGCTGATAAAC
ATAAGTATTTCACCCCTGTTTGAAAAGTCATCATTACTTTGCTTATTTTG
TGGGTTATTGTCGATTTCGAAAGATCAATACATAAGGTAACTGGACATAT
TCTTCTAAAATCTCCCCTAAAGGGCCCTACCATTTCTTCAGAAGTTAATT
AAAAATTTTTTGCACCGGCATGCGCAGAATGGATGATCTGTTCTGAGACG
AAACTGATGTAGCATTTCTTTTATATCATTCTGTTTTTAAAGAAATAATT
TTTGGGGACACAAAATTTTGTAAAATTTAGTTTGTACCAAGATATACTTT
TTATGCCATCCCTTAAATCAAATGTAATTTATTTAAGTATTTCCCAAATT
TGTGCTATTCCAGGCCTTGATTACAGTAAAACAGGGTTTTCGGCTTAGTA
TATTAATTTTGCAAAAATTTCCCAAAACCAACTAATTAAAACTCTGCCGA
ATACTTATTTCAACTCATCTGCCAAATTAACTTTTGGGGTACTAGAAGTA
AATTTTTCTATACCTGATCTGATCTTGCAAAGAAATTCATAAGGTTATTT
CTCAAAAAAAATACTATTTGATTATTTCTTATTGATTTTATTAACTGAAT
TTGAATTTGAAGCGTTGTTTTGGTGGTTGAACTCTTGATTTCGATGTTCA
TTATTTTCTTGGTATGATTAGTCAGCCTAGAGATTTTCTGGTTTGCCACC
GTTCTGGCAAAAATAATCCTCTTAACAGAAGGAAACAATGTTTGTCTTGA
ACCTAATTAATGAGAGCTCAAATCCTTATCATTAGATTGATGAAATGTCA
AACAAATCAGGATGTTTAGTTTCTATAGTGATACCTGTCCATAATGGTAG
CGCATTTATTGAGGAAGCTTTGGAATCAATCCTTAAACAAAGTTGGAAAG
AATCTCTTGAAGTATCTATATTTGACGATTGCAGTACAGATGATTCTTAC
AAGAAACTTTTAACGTGGAAAGATAAGTTCGAAAATAATGGAATACACGT
TGTTTTGAGTCAGAGTCAAAATAATGAAGCAGGTGGAGTTGGGTTTGCCA
AAAACTGTGCAATTTCACAATCGTCTGGCAATTTCATTTGCTTTCTTGAT
ATTGATGATGTAATGCACGAGAAACGTATTGAACTTCAATTATCAAAAGC
CAAAGAAGATACAAACTTGATTGTTGGGTCTGGTTATGTTCGATTGCCAG
AAGGTTCAACTGTGCGTTATACAGAATGGAGCAATTCATTAGCAGATTCC
CAGTTACACACACAGATATATACCTCGTTTGGTCCCACTATAATCAACCC
AACTTGGTTTTGTTCCCGTGACATTTTCAAGAATACCGGTTATTTTAAAG
AGGTTCAAAAAGGATTTCCTGAAGATCTTGAATTCTTTTATCGACATTTA
GATAATAATGGGAAACTAGCGCTTGTCAAGAAACCTTTGCTGACTTATAG
GTATCATTCAGCAGGGGCTACATTTTCAGTTCATGAAGATACAATATGGG
ACTTGCGAATGAAACAAATACAAAAGAACGTCATATCAAAATGGGGCAAT
TTCACTATTTGGAATGCTGGTAAACAAGGCCGTAAATTTTATCGCTCCCT
TGGTCCGGAGAATCGTGAAAAAGTATTATGTATGTGCGATGTGGATGAGA
AAAAGATACAAAAAGGAGTCTATACATGTGAAATGATTAAAGGTGCCGAT
GGAAAACCATTGAAAGTTCCAATAGTTCATTTCAAAGATGCTAGAAAACC
ATTCATTATTTGTGTCAAGCTGGGAATGTCGAATGGAGTATTTGAAGATA
ATTTGTCTTCTCTTTGTTTGGAAGAAGGAAAAGATTTCTTTCATTTTAAT
TGAAGATATAATTTCTCAATAGATGATTTTAGTTCTTATCCAGGAATTTC
CATCAGTGTTTTGTAATATAATTTTGTAATGGGATGATTTTATTATATAT
CATTTCATCTTTCTTTCTTTTTTTCTCGTAATGTTTAATCAATTTCGAGG
AACTGAACTTGTCATGGTCTAATTTGTATCATTGGGAATTTTGGCTAAAT
TAAGTTATCAATTCAAAATGTCTATGTCTTTG Coding sequence (CDS) from alignment at sc0000073:67459..77340- >TCONS_00007060 ID=TCONS_00007060|Name=TCONS_00007060|organism=Clytia hemisphaerica|type=CDS|length=1059bp|location=Sequence derived from alignment at sc0000073:67459..77340- (Clytia hemisphaerica) ATGTCAAACAAATCAGGATGTTTAGTTTCTATAGTGATACCTGTCCATAA TGGTAGCGCATTTATTGAGGAAGCTTTGGAATCAATCCTTAAACAAAGTT GGAAAGAATCTCTTGAAGTATCTATATTTGACGATTGCAGTACAGATGAT TCTTACAAGAAACTTTTAACGTGGAAAGATAAGTTCGAAAATAATGGAAT ACACGTTGTTTTGAGTCAGAGTCAAAATAATGAAGCAGGTGGAGTTGGGT TTGCCAAAAACTGTGCAATTTCACAATCGTCTGGCAATTTCATTTGCTTT CTTGATATTGATGATGTAATGCACGAGAAACGTATTGAACTTCAATTATC AAAAGCCAAAGAAGATACAAACTTGATTGTTGGGTCTGGTTATGTTCGAT TGCCAGAAGGTTCAACTGTGCGTTATACAGAATGGAGCAATTCATTAGCA GATTCCCAGTTACACACACAGATATATACCTCGTTTGGTCCCACTATAAT CAACCCAACTTGGTTTTGTTCCCGTGACATTTTCAAGAATACCGGTTATT TTAAAGAGGTTCAAAAAGGATTTCCTGAAGATCTTGAATTCTTTTATCGA CATTTAGATAATAATGGGAAACTAGCGCTTGTCAAGAAACCTTTGCTGAC TTATAGGTATCATTCAGCAGGGGCTACATTTTCAGTTCATGAAGATACAA TATGGGACTTGCGAATGAAACAAATACAAAAGAACGTCATATCAAAATGG GGCAATTTCACTATTTGGAATGCTGGTAAACAAGGCCGTAAATTTTATCG CTCCCTTGGTCCGGAGAATCGTGAAAAAGTATTATGTATGTGCGATGTGG ATGAGAAAAAGATACAAAAAGGAGTCTATACATGTGAAATGATTAAAGGT GCCGATGGAAAACCATTGAAAGTTCCAATAGTTCATTTCAAAGATGCTAG AAAACCATTCATTATTTGTGTCAAGCTGGGAATGTCGAATGGAGTATTTG AAGATAATTTGTCTTCTCTTTGTTTGGAAGAAGGAAAAGATTTCTTTCAT TTTAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007060-exon-sc0000073-1575043694:77293..77340 | TCONS_00007060-exon-sc0000073-1575043694:77293..77340 | Clytia hemisphaerica | exon |
TCONS_00007060-exon-sc0000073-1575043694:67459..68755 | TCONS_00007060-exon-sc0000073-1575043694:67459..68755 | Clytia hemisphaerica | exon |
TCONS_00007060-exon-sc0000073-1510915933:77293..77340 | TCONS_00007060-exon-sc0000073-1510915933:77293..77340 | Clytia hemisphaerica | exon |
TCONS_00007060-exon-sc0000073-1510915933:67459..68755 | TCONS_00007060-exon-sc0000073-1510915933:67459..68755 | Clytia hemisphaerica | exon |
TCONS_00007060-exon-sc0000073-1491911889:77293..77340 | TCONS_00007060-exon-sc0000073-1491911889:77293..77340 | Clytia hemisphaerica | exon |
TCONS_00007060-exon-sc0000073-1491911889:67459..68755 | TCONS_00007060-exon-sc0000073-1491911889:67459..68755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000073 | supercontig | sc0000073:67459..77340 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR001173 | Glyco_trans_2-like |
IPR029044 | Nucleotide-diphossugar_trans |
Blast
BLAST of TCONS_00007060 vs. Swiss-Prot (Human)
Match: B3GNL (UDP-GlcNAc:::betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 OS=Homo sapiens GN=B3GNTL1 PE=2 SV=2) HSP 1 Score: 349.362 bits (895), Expect = 2.096e-116 Identity = 167/353 (47.31%), Postives = 230/353 (65.16%), Query Frame = 1
Query: 55 EMSNKSGCLVSIVIPVHNGSAFIEEALESILKQSWKESLEVSIFDDCSTDDSYKKLLTWKDKFENNGIHVVLSQSQNNEAGGVGFAKNCAISQSSGNFICFLDIDDVMHEKRIELQLSKAKEDTNLIVGSGYVRLPEGSTVRYTEWSNSLADSQLHTQIYTSFGPTIINPTWFCSRDIFKNTGYFKEVQKGFPEDLEFFYRHLDNNGKLALVKKPLLTYRYHSAGATFSVHEDTIWDLRMKQIQKNVISKWGNFTIWNAGKQGRKFYRSLGPENREKVLCMCDVDEKKIQKGVYTCEMIKGADGKPLKVPIVHFKDARKPFIICVKLGMSNGVFEDNLSSLCLEEGKDFFHFN 1113
E S VSI++PVHN +++E L S+L+Q ++ ++E+S+F+D S D S + W+ K E++G+HV++ + GVG+AKN A++QSSG+++CFLD DDVM +R+ LQ A + + I+G R P ST RYT W N L QL TQ++TS GPT+I PTWFCSR F + G F E +G PEDL FFY HL G + V + LL YR+H AT V E TIW R++ +++ + +W FTIWNAGKQGR+ YRSL ++ KV+ CDVDE KI+KG Y C KP ++PI+HF+ AR PF+ICVKL ++ G FEDNL SL L+EG+DF HF+
Sbjct: 11 EESQAMQAHVSIILPVHNAEPWLDECLRSVLQQDFEGTMELSVFNDASKDKSGAIIEKWRVKLEDSGVHVIIGGHDSPSPRGVGYAKNQAVAQSSGSYLCFLDSDDVMMPQRVRLQHEAAVQHPSSIIGCRVRRDPPNSTERYTRWINQLTPEQLLTQVFTSNGPTVIMPTWFCSRAWFSHVGPFNEGGQGVPEDLLFFYEHLRKGGGVIRVDQSLLLYRHHPQAATHCVLETTIWTHRVRFLEEQALPRWAAFTIWNAGKQGRRLYRSLTAGSQRKVVAFCDVDENKIRKGFY-CHEDSQERPKP-RIPILHFRAARPPFVICVKLDLTGGAFEDNLRSLHLQEGQDFLHFS 361
The following BLAST results are available for this feature:
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