TCONS_00007060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007060
Unique NameTCONS_00007060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007060 ID=TCONS_00007060|Name=TCONS_00007060|organism=Clytia hemisphaerica|type=transcript|length=1345bp
AAGTAAAGAATCTTCAAAGTATTTATACCATTAGTGACTATGGATTAGAT
TGATGAAATGTCAAACAAATCAGGATGTTTAGTTTCTATAGTGATACCTG
TCCATAATGGTAGCGCATTTATTGAGGAAGCTTTGGAATCAATCCTTAAA
CAAAGTTGGAAAGAATCTCTTGAAGTATCTATATTTGACGATTGCAGTAC
AGATGATTCTTACAAGAAACTTTTAACGTGGAAAGATAAGTTCGAAAATA
ATGGAATACACGTTGTTTTGAGTCAGAGTCAAAATAATGAAGCAGGTGGA
GTTGGGTTTGCCAAAAACTGTGCAATTTCACAATCGTCTGGCAATTTCAT
TTGCTTTCTTGATATTGATGATGTAATGCACGAGAAACGTATTGAACTTC
AATTATCAAAAGCCAAAGAAGATACAAACTTGATTGTTGGGTCTGGTTAT
GTTCGATTGCCAGAAGGTTCAACTGTGCGTTATACAGAATGGAGCAATTC
ATTAGCAGATTCCCAGTTACACACACAGATATATACCTCGTTTGGTCCCA
CTATAATCAACCCAACTTGGTTTTgttcccgtgacattttcaaGAATACC
GGTTATTTTAAAGAGGTTCAAAAAGGATTTCCTGAAGATCTTGAATTCTT
TTATCGACATTTAGATAATAATGGGAAACTAGCGCTTGTCAAGAAACCTT
TGCTGACTTATAGGTATCATTCAGCAGGGGCTACATTTTCAGTTCATGAA
GATACAATATGGGACTTGCGAATGAAACAAATACAAAAGAACGTCATATC
AAAATGGGGCAATTTCACTATTTGGAATGCTGGTAAACAAGGCCGTAAAT
TTTATCGCTCCCTTGGTCCGGAGAATCGTGAAAAAGTATTATGTATGTGC
GATGTGGATgagaaaaagatacaaaaagGAGTCTATACATGTGAAATGAT
TAAAGGTGCCGATGGAAAACCATTGAAAGTTCCAATAGTTCATTTCAAAG
ATGCTAGAAAACCATTCATTATTTGTGTCAAGCTGGGAATGTCGAATGGA
GTATTTGAAGATAATTTGTCTTCTCTTTGTTTGGAAGAAGGaaaagattt
ctttcattttaattgAAGATATAATTTCTCAATAGATGATTTTAGTTCTT
ATCCAGGAATTTCCATCAGTGTTTTGTAATATAATTTTGTAATGGGATGA
TTTTATTATATATCATTtcatctttctttctttttttctcgtaatGTTTA
ATCAATTTCGAGGAACTGAACTTGTCATGGTCTAATTTGTATCATTGGGA
ATTTTGGCTAAATTAAGTTATCAATTCAAAATGTCTATGTCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00007060-protein

>TCONS_00007060-protein ID=TCONS_00007060-protein|Name=TCONS_00007060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MSNKSGCLVSIVIPVHNGSAFIEEALESILKQSWKESLEVSIFDDCSTDD
SYKKLLTWKDKFENNGIHVVLSQSQNNEAGGVGFAKNCAISQSSGNFICF
LDIDDVMHEKRIELQLSKAKEDTNLIVGSGYVRLPEGSTVRYTEWSNSLA
DSQLHTQIYTSFGPTIINPTWFCSRDIFKNTGYFKEVQKGFPEDLEFFYR
HLDNNGKLALVKKPLLTYRYHSAGATFSVHEDTIWDLRMKQIQKNVISKW
GNFTIWNAGKQGRKFYRSLGPENREKVLCMCDVDEKKIQKGVYTCEMIKG
ADGKPLKVPIVHFKDARKPFIICVKLGMSNGVFEDNLSSLCLEEGKDFFH
FN
Run BLAST on NCBI

transcript from alignment at sc0000073:67459..77340-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007060 ID=TCONS_00007060|Name=TCONS_00007060|organism=Clytia hemisphaerica|type=transcript|length=9882bp|location=Sequence derived from alignment at sc0000073:67459..77340- (Clytia hemisphaerica)
AAGTAAAGAATCTTCAAAGTATTTATACCATTAGTGACTATGGATTAGGT AGAAGAGTTTTTGTTTCTTTTTATCTTTTTTCTACTTGTAATGTCAGCTT GTGAGCTTCTGAGAGGACAGACAGGATGCAGGTGAAGGGCCTGGGGATGG AGAAGAATCGTTTTTTTTTAATAGACAGACTAGTCTTTTTACCTTAAATT GTCTAAATAAAGCCCTAAACTGCTGCAATTATCTGATCCTTCAAATGTTT ATTGTAAAACCTTCTAAATAAGCTGTTTAATAAAATCGCTTTAACTACTG ATAACTACTTTGCAGACCAGAAAGTCTATGGCGGAAATAGACAGCTATAT TCGACAACCGCACAACCGCCAAAAGGACCCTGTCGACGCACCGGACTCCG GTGTATTTGTCCGGTGGCAAAAAGTATCCTTTCGCTACACCGGACGCAAT AAGTCTGGTGTCAGTTCGGTGTTGCATACAGGGAATTTTGGACGCCGGAC ATTTATGAAAAAAAAAATTAAGAAACACCGGACCCACCGGACTGGCCATG TCCGGTGTTTTGATTGTCCGGTGGGAAAAATATCCTTCTCCGACACCGGA CATCCGACCTCCTTAAGTCCGGTGTAGAAATTGTCCGGTGGTAAAAAAAA TTCTCATTTTACATCAGACTTTCGCGTGTCCGGTGTTCGTTAAGTCCGGT GCGTCGGCAGGGTCCTCCGCCAAAGCTTTGCTACAAAAAATTCAAAGTGG AGTATTTTTTAGGTAAAAAATCCTTGAAATCCAGCATTTCCCTGGGGGGT CTTTGATTAGCATTAAAACGAAAAATGCATAAAAGTGGCATTTTTTGCCC ATTTTAAGGCTAAGAAAGGTCAGGAAAGGGTCAAAATGGTTTTTAAATGC AACATAAAAAGACAAAATAATCCCATTAGCAGGTCACTCAATGTTGTTTC AATTTTAGGCTAAAAAGGCTAATCTTCTCTGACTCTGAGTAGCAAAATGC ATGAAAGCATCATCTTTGAGGTTTTGGCTAATATCTCAAAAGATTCATCT AGGAGGAATGAAAAGAAGTTTGTGATTAAAAGGAGTTCTTTACCTACCAT TTCTCTGCTTAGTTTCCTTACTTTTCCTAATTTTACCTATACCGTTTTTT TACGGGGAGAGTGAAGTTTCCTGCAGTCCCTAAAATCAAAACAATGGAAA ATTGTTTGGACGCGTGCGCAGTCGACACTACTAAACTGTGTACACATTGT TTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATGCCTAA AAACTAAGAAACATAAGAAACATGCTGAGGCTGAGAATGAAAAATGAGCA TTTTTTAATTCGTTTTTTAAGAACCTTTCAATCAAGGTTCCAGAAATATA CATATATAACAGTTAGAAACACTTGAGAAAGTCAGAAAATCAATATATAT AGAAGATAGGAAAGTAGCGTAGATTAGTCAATTAGACTATTGTATTATCG ACATGCGCCCTTTAAGCTTGACAAGGTTTAGAAACATGTAAGAAACATTT AAGGCTCAAAAGGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAA CCAGTTTCTTAAAAAAAAAATGTTTATTCAGAAGGGAAATTCCCTATGTG ATTCCTTATTGACTCCCTTTGGAGCAAAGCTATTACCTTCTTTTAACAGG GAGGAAAAAAGCCTCAACACTGCATGAGAGGATATTGGCTGATATATTTA CAACACTGAAGTCTCATCCCGCAAATTCTATGTAAAAGTTATGAAAATGA AAATGTGCCAAGTTGTTGTTACCTTATTGGCCCATTTTACACCAGTTGTT TTTGAGTATGAAGTGGATTTTTAAAAGGCTAAAAAGTAAAACTGGTCAAA TTTATGGACTTTTATTTCATTTTTGATATAAAAGTCCGTTAGAACCAGAA GATAATTGTGTGTTGTGTTGTGTGCTCTTGAAATTTCTCCGCGATCCTAA TTTAACAAGGTTGAATTTCTTGTGTAGGACGTAAGTGACCTAGCCCATGT TGATGAAAGGAGCTATGGGAGTGTTTTGATTGACTAGTAAGAAATAGAAC CTTGTTGTACTGGTTATATTAAGAATAAACTTTGATAGTAAATGAATTCT ATAAAACCTTTTGGCACTGAAAAACAGTCAGCCGANATGTTAGGGGACCT AGCACAAGACAATTTTTTTGGGGGAGCTAAATTGTTGGGGGGACCTTACT TTGTTGGGGGGAGCTAGAAACCTGGCTGAAGCTATGTATACATAATATGT GTATCAACTTCAAAAATAAAAACATTACTCGGCCTATTGAAGTAAGTCAT TATGTTAATACATAATACATAATACATTTGTGCTGAAACCTCTTCTAGAT ATCAAATTGAAAAGGAGACTTTACTGTAAAGTAAAAAAAGTAATAGAAGG TTGGAAAAAACTGGAAAAGACAGATTGACCCCCTCCCCCAGTATGTAGGC TTTCAAACATTTTCCCAAAGACCCCCCCCCCCCCCCNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGCAT GAGAGGATATTGGCTGATATATTTACAACACTGAAGTCTCATCCCGCAAA TTCTATGTAAAAGTTATGAAAATGAAAATGTGCCAAGTTGTTGTTACCTT ATTGGCCCATTTTACACCAGTTGTTTTTGAGTATGAAGTGGATTTTTAAA AGGCTAAAAAGTAAAACTGGTCAAATTTATGGACTTTTATTTCATTTTTG ATATAAAAGTCCGTTAGAACCAGAAGATAATTGTGTGTTGTGTTGTGTGC TCTTGAAATTTCTCCGCGATCCTAATTTAACAAGGTTGAATTTCTTGTGT AGGACGTAAGTGACCTAGCCCATGTTGATGAAAGGAGCTATGGGAGTGTT TTGATTGACTAGTAAGAAATAGAACCTTGTTGTACTGGTTATATTAAGAA TAAACTTTGATAGTAAATGAATTCTATAAAACCTTTTGGCACTGAAAAAC AGTCAGCCGATCAGAATGCTTTATTTGCTCAATTGAAAATCAAGTAATCA GATAGAGTTGAAACCTTGTTGAATTAGGTGATGATTTGATAGACCAAAAA ATCGACAAATTTTCATAAGGGACCATTAAAAAATATGTATGTTTTATATT GGCAAAATGCAACCCCACCCCTTGTATGCTCTTGTATGCATTGATGGTAG CCCTCTTCCTTTGCATATGCTCTTTTTCAATTACTCCACCCTCAACAAAA TTATTTTCACTTTCAGGAATGGTGTTCCTAAAAGGTAGGGTACCCCAATC GGGGCCCCAATTGGGCTACCTATTGGGGTACTCATTGATTTACAGACCAA AATTAAATATTAACCAAAAATTTGTGGAGGAAAGTCATCTTCTAGGCCAG AAGTTATGAATCTAAAAAATATTTCAATTAATATTGCATAATGCAGAAGA TAGTTAAAGATACATAATTCATTTTGTCAAAGCACATGATGTATAATAGA GCTTTGTGACGGGGTTCGTATATACATATACCATAGGTTCAGCCCCCCCC TTATTTTTGGGGGGGGGGCTAAGAAATATTTTGGCCTTTAAAGAGCCTGG GGGCTAAAATTACCAAAATATTTGGGGGGACCTAGATTGTTGGGGGGNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTCAGAGTTTGCGTA CTTTTTGAATTGTCTCCAGGTTGTCTCTACTCCATGTAAAAAGCATTGTA TCTTATATAGTTGTCCCTGTTATCTACACGGTCTAGGTGTTAGCTTTGGC GATTTTGATGCATCCTTCATGTTATCCCAAATCCAATTTTACAATTTCAA GAATTAGTCCACTTTCATTTTTCATTTGAAACATCCTTTTATGTCATGGT ATATTTCTGTCTACCATTCCTTGGCTAAGGTTTACTTAGGGCTGATAAAC ATAAGTATTTCACCCCTGTTTGAAAAGTCATCATTACTTTGCTTATTTTG TGGGTTATTGTCGATTTCGAAAGATCAATACATAAGGTAACTGGACATAT TCTTCTAAAATCTCCCCTAAAGGGCCCTACCATTTCTTCAGAAGTTAATT AAAAATTTTTTGCACCGGCATGCGCAGAATGGATGATCTGTTCTGAGACG AAACTGATGTAGCATTTCTTTTATATCATTCTGTTTTTAAAGAAATAATT TTTGGGGACACAAAATTTTGTAAAATTTAGTTTGTACCAAGATATACTTT TTATGCCATCCCTTAAATCAAATGTAATTTATTTAAGTATTTCCCAAATT TGTGCTATTCCAGGCCTTGATTACAGTAAAACAGGGTTTTCGGCTTAGTA TATTAATTTTGCAAAAATTTCCCAAAACCAACTAATTAAAACTCTGCCGA ATACTTATTTCAACTCATCTGCCAAATTAACTTTTGGGGTACTAGAAGTA AATTTTTCTATACCTGATCTGATCTTGCAAAGAAATTCATAAGGTTATTT CTCAAAAAAAATACTATTTGATTATTTCTTATTGATTTTATTAACTGAAT TTGAATTTGAAGCGTTGTTTTGGTGGTTGAACTCTTGATTTCGATGTTCA TTATTTTCTTGGTATGATTAGTCAGCCTAGAGATTTTCTGGTTTGCCACC GTTCTGGCAAAAATAATCCTCTTAACAGAAGGAAACAATGTTTGTCTTGA ACCTAATTAATGAGAGCTCAAATCCTTATCATTAGATTGATGAAATGTCA AACAAATCAGGATGTTTAGTTTCTATAGTGATACCTGTCCATAATGGTAG CGCATTTATTGAGGAAGCTTTGGAATCAATCCTTAAACAAAGTTGGAAAG AATCTCTTGAAGTATCTATATTTGACGATTGCAGTACAGATGATTCTTAC AAGAAACTTTTAACGTGGAAAGATAAGTTCGAAAATAATGGAATACACGT TGTTTTGAGTCAGAGTCAAAATAATGAAGCAGGTGGAGTTGGGTTTGCCA AAAACTGTGCAATTTCACAATCGTCTGGCAATTTCATTTGCTTTCTTGAT ATTGATGATGTAATGCACGAGAAACGTATTGAACTTCAATTATCAAAAGC CAAAGAAGATACAAACTTGATTGTTGGGTCTGGTTATGTTCGATTGCCAG AAGGTTCAACTGTGCGTTATACAGAATGGAGCAATTCATTAGCAGATTCC CAGTTACACACACAGATATATACCTCGTTTGGTCCCACTATAATCAACCC AACTTGGTTTTGTTCCCGTGACATTTTCAAGAATACCGGTTATTTTAAAG AGGTTCAAAAAGGATTTCCTGAAGATCTTGAATTCTTTTATCGACATTTA GATAATAATGGGAAACTAGCGCTTGTCAAGAAACCTTTGCTGACTTATAG GTATCATTCAGCAGGGGCTACATTTTCAGTTCATGAAGATACAATATGGG ACTTGCGAATGAAACAAATACAAAAGAACGTCATATCAAAATGGGGCAAT TTCACTATTTGGAATGCTGGTAAACAAGGCCGTAAATTTTATCGCTCCCT TGGTCCGGAGAATCGTGAAAAAGTATTATGTATGTGCGATGTGGATGAGA AAAAGATACAAAAAGGAGTCTATACATGTGAAATGATTAAAGGTGCCGAT GGAAAACCATTGAAAGTTCCAATAGTTCATTTCAAAGATGCTAGAAAACC ATTCATTATTTGTGTCAAGCTGGGAATGTCGAATGGAGTATTTGAAGATA ATTTGTCTTCTCTTTGTTTGGAAGAAGGAAAAGATTTCTTTCATTTTAAT TGAAGATATAATTTCTCAATAGATGATTTTAGTTCTTATCCAGGAATTTC CATCAGTGTTTTGTAATATAATTTTGTAATGGGATGATTTTATTATATAT CATTTCATCTTTCTTTCTTTTTTTCTCGTAATGTTTAATCAATTTCGAGG AACTGAACTTGTCATGGTCTAATTTGTATCATTGGGAATTTTGGCTAAAT TAAGTTATCAATTCAAAATGTCTATGTCTTTG

Coding sequence (CDS) from alignment at sc0000073:67459..77340-

>TCONS_00007060 ID=TCONS_00007060|Name=TCONS_00007060|organism=Clytia hemisphaerica|type=CDS|length=1059bp|location=Sequence derived from alignment at sc0000073:67459..77340- (Clytia hemisphaerica)
ATGTCAAACAAATCAGGATGTTTAGTTTCTATAGTGATACCTGTCCATAA
TGGTAGCGCATTTATTGAGGAAGCTTTGGAATCAATCCTTAAACAAAGTT
GGAAAGAATCTCTTGAAGTATCTATATTTGACGATTGCAGTACAGATGAT
TCTTACAAGAAACTTTTAACGTGGAAAGATAAGTTCGAAAATAATGGAAT
ACACGTTGTTTTGAGTCAGAGTCAAAATAATGAAGCAGGTGGAGTTGGGT
TTGCCAAAAACTGTGCAATTTCACAATCGTCTGGCAATTTCATTTGCTTT
CTTGATATTGATGATGTAATGCACGAGAAACGTATTGAACTTCAATTATC
AAAAGCCAAAGAAGATACAAACTTGATTGTTGGGTCTGGTTATGTTCGAT
TGCCAGAAGGTTCAACTGTGCGTTATACAGAATGGAGCAATTCATTAGCA
GATTCCCAGTTACACACACAGATATATACCTCGTTTGGTCCCACTATAAT
CAACCCAACTTGGTTTTGTTCCCGTGACATTTTCAAGAATACCGGTTATT
TTAAAGAGGTTCAAAAAGGATTTCCTGAAGATCTTGAATTCTTTTATCGA
CATTTAGATAATAATGGGAAACTAGCGCTTGTCAAGAAACCTTTGCTGAC
TTATAGGTATCATTCAGCAGGGGCTACATTTTCAGTTCATGAAGATACAA
TATGGGACTTGCGAATGAAACAAATACAAAAGAACGTCATATCAAAATGG
GGCAATTTCACTATTTGGAATGCTGGTAAACAAGGCCGTAAATTTTATCG
CTCCCTTGGTCCGGAGAATCGTGAAAAAGTATTATGTATGTGCGATGTGG
ATGAGAAAAAGATACAAAAAGGAGTCTATACATGTGAAATGATTAAAGGT
GCCGATGGAAAACCATTGAAAGTTCCAATAGTTCATTTCAAAGATGCTAG
AAAACCATTCATTATTTGTGTCAAGCTGGGAATGTCGAATGGAGTATTTG
AAGATAATTTGTCTTCTCTTTGTTTGGAAGAAGGAAAAGATTTCTTTCAT
TTTAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003947XLOC_003947Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007060-proteinTCONS_00007060-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007060-exon-sc0000073-1575043694:77293..77340TCONS_00007060-exon-sc0000073-1575043694:77293..77340Clytia hemisphaericaexon
TCONS_00007060-exon-sc0000073-1575043694:67459..68755TCONS_00007060-exon-sc0000073-1575043694:67459..68755Clytia hemisphaericaexon
TCONS_00007060-exon-sc0000073-1510915933:77293..77340TCONS_00007060-exon-sc0000073-1510915933:77293..77340Clytia hemisphaericaexon
TCONS_00007060-exon-sc0000073-1510915933:67459..68755TCONS_00007060-exon-sc0000073-1510915933:67459..68755Clytia hemisphaericaexon
TCONS_00007060-exon-sc0000073-1491911889:77293..77340TCONS_00007060-exon-sc0000073-1491911889:77293..77340Clytia hemisphaericaexon
TCONS_00007060-exon-sc0000073-1491911889:67459..68755TCONS_00007060-exon-sc0000073-1491911889:67459..68755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:67459..77340 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.431 12.5777 7.35502 6.1233 11.7504 8.15374 7.42805 8.23209 5.73716 4.30296 4.87265 3.09909 4.11253 3.38653 4.77035 6.10893 5.29847 5.64703 2.65589 2.50128 4.77086 3.79988 12.2822 11.264 5.83434 6.2544 4.06819 3.01633 6.41271 6.99265
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001173Glyco_trans_2-like
IPR029044Nucleotide-diphossugar_trans
Blast
BLAST of TCONS_00007060 vs. Swiss-Prot (Human)
Match: B3GNL (UDP-GlcNAc:::betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 OS=Homo sapiens GN=B3GNTL1 PE=2 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 2.096e-116
Identity = 167/353 (47.31%), Postives = 230/353 (65.16%), Query Frame = 1
Query:   55 EMSNKSGCLVSIVIPVHNGSAFIEEALESILKQSWKESLEVSIFDDCSTDDSYKKLLTWKDKFENNGIHVVLSQSQNNEAGGVGFAKNCAISQSSGNFICFLDIDDVMHEKRIELQLSKAKEDTNLIVGSGYVRLPEGSTVRYTEWSNSLADSQLHTQIYTSFGPTIINPTWFCSRDIFKNTGYFKEVQKGFPEDLEFFYRHLDNNGKLALVKKPLLTYRYHSAGATFSVHEDTIWDLRMKQIQKNVISKWGNFTIWNAGKQGRKFYRSLGPENREKVLCMCDVDEKKIQKGVYTCEMIKGADGKPLKVPIVHFKDARKPFIICVKLGMSNGVFEDNLSSLCLEEGKDFFHFN 1113
            E S      VSI++PVHN   +++E L S+L+Q ++ ++E+S+F+D S D S   +  W+ K E++G+HV++    +    GVG+AKN A++QSSG+++CFLD DDVM  +R+ LQ   A +  + I+G    R P  ST RYT W N L   QL TQ++TS GPT+I PTWFCSR  F + G F E  +G PEDL FFY HL   G +  V + LL YR+H   AT  V E TIW  R++ +++  + +W  FTIWNAGKQGR+ YRSL   ++ KV+  CDVDE KI+KG Y C        KP ++PI+HF+ AR PF+ICVKL ++ G FEDNL SL L+EG+DF HF+
Sbjct:   11 EESQAMQAHVSIILPVHNAEPWLDECLRSVLQQDFEGTMELSVFNDASKDKSGAIIEKWRVKLEDSGVHVIIGGHDSPSPRGVGYAKNQAVAQSSGSYLCFLDSDDVMMPQRVRLQHEAAVQHPSSIIGCRVRRDPPNSTERYTRWINQLTPEQLLTQVFTSNGPTVIMPTWFCSRAWFSHVGPFNEGGQGVPEDLLFFYEHLRKGGGVIRVDQSLLLYRHHPQAATHCVLETTIWTHRVRFLEEQALPRWAAFTIWNAGKQGRRLYRSLTAGSQRKVVAFCDVDENKIRKGFY-CHEDSQERPKP-RIPILHFRAARPPFVICVKLDLTGGAFEDNLRSLHLQEGQDFLHFS 361          
The following BLAST results are available for this feature:
BLAST of TCONS_00007060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GNL2.096e-11647.31UDP-GlcNAc:::betaGal beta-1,3-N-acetylglucosaminyl... [more]
back to top