TCONS_00070679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070679
Unique NameTCONS_00070679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070679 ID=TCONS_00070679|Name=TCONS_00070679|organism=Clytia hemisphaerica|type=transcript|length=2794bp
AGACATGTCATATATTATCTGCAGAGAAGAGTAAacaattttcactgaat
ttgaTAGTAGTAAATTTAACTGGAAATAAATTAATCCTTTTTTTAAGTga
gaataaaacaaaaaaaatatggaTTGAATTAAAACAATAATTTGAGTAAA
ATCAACTTTTGTCATGGCTAACCCTAAAAGACCAATAGGGACTGCAAGCC
CTAACACCATCAATGCAGTTGTGCCTATGTGTACAAACCAAAGTAGCTCA
TCAAAGCATGGTAGTTCTAGTCCAAACAACCCTGATTTGGCATCATTATT
TGAATgtccagtttgttttgattatgtTTTACCGCCAATTTTCCAATGTA
GCAGTGGGCATTTAGTATGTTCAAATTGTCGGCCAAAATTGGCAGGAATC
TGTCCAACATGTAGAGGACCTTTAGGGAGTATTCGTAATTTGGCAATGGA
AAAAGTTGCAAATACTGTTTTGTTTCCATGCCGTTATGCAAATAATGGAT
GTATTGTTGCTTTACCGCATACACAGAAAAGTGAACACGAAGAAGGATGT
GAGTTTCGTCCTTATGCTTGTCCTTGTCCTGGAGCATCATGCAAATGGCA
AGGTTCTTTAGATGCAGTCATGCCTCATTTAGTACATGCGCACAAGTCAA
TAACAACATTACAGGGTgaagatattgtatttttagcGACAGACATTAAT
TTACCAGGTGCGGTTGATTGGGTTATGATGCAATCATGTTTTGGCCATCA
CTTCATGTTGGTCCTGGAAAAACAAGAACGATTTGAAGGACATCAACAAT
TTTTTGCTGTGGTTCAACTGATAGGGAGCCGAAAACaagctgaaaatttt
gcttACAGACTTGAATTGAATGGCCGTCGAAGGAGGCTTGCATGGGAAGC
TACCCCAAGAAGCATCCATGATGGGATCCAATCAGCAATCATTAATAGTG
ATTGCCTGGTGTTTGATACCAGCATTGCTCAATTATTTGCTGAAGCTGGT
AATCTTGGCATTAATGTGACTATCTCAATGTGTTGAGATGAACTAGTGTA
GTTAGATTATgcatttgaaaacaaagaagtGGATATGATGAATTAAACTG
GGGTAATAAATTCATATTCAATTCATGAATGCTGGTTTATATGaaaagtt
tttataattttgagaGGTATCATGAAACATGTTTTACTGCAGCTTGTTTA
CTTCAACCTGTTAGAAAATCTTACAGCGCCAActtttttagattattttt
acagaatttcgcTTCTATTTTATGGAACAGCTTCCTTGGTTATtcctttt
taacattttcatctTTGGTCTAGCTTTTATCAATGTACGAATCAgccttt
taaatttcaaataaaaaaggtttttttaatcTAGATGgaaaaattcacat
ttttacATGAAATGATTTGTTCTTTGCaaaatgttttggttcaatGAAAG
TTTCGATGATTTTGCATTTGAATACACCTATAAACCCTTAAAGCCTAAGG
AGACTTTAGAGTTTCACAGGCGGTACGAACTTCAAAGCTCTTTGATGATG
AGTAAATATCAATGCACAGCTTTAAGGGGTAATTAATCTCACAagagatc
atccattctgcacATACCACGCTCTGCTCCAAAGGACTAAGGTGAATTTG
GCAATCTGACTTGGTGTTTCAGAAAAGCGAAACTatcaaaatggcaatac
ctttGCTTGAAGGAGAAAGCGACTGGGTCCTAATGCGATTGGTTTAAAGT
TCAAAGTGGTGCGCCAACCTGAGCAGATTCTTTTACTGAGCCATGGCCTT
TAGAGTAAATACCTGCCATGCGCGGAGTATAAGAATTTATTCGTAGATTA
AGAGTTGATAGGTGTATTAGAACTAACTTGATCACTGAGATTGTTTACTT
TTATCATGTATGTTAAGGTCTGGTAAGGAATCTATTCTTGtacatattta
ttttgaaattatacatttttagcagtttttttcttgttcctttgATAGAT
TTGATACTTAGTTTTTTTTCAGTTCCAGGTGCTTTGTTTGGTATTATTTT
TCCcatgatattttgaaatttcattattcaaGACATTTTTAAAATAGTTA
CATAGCTACTCTTCAAGCATTTCGGGGGCGAAAATATTTATCCAATTGGC
TTAAAAGCTTGCAAGTCTGCACCAAATTTGAACTATTTGAGTCTTTGATA
CTTTGTAAATGCCAAAAATAGGACCCCCactatttttttggtaaaatatg
gaCCGGTTTTTAAAATACCAACTACGTGACCAAACTAAAAATTTGCCTTA
AATGGTCAATATCCTGtcactggtgaaaatttcaagtcaaaggCTCCTGT
AGTTCCTAAGTGCCTGCAGGGTTGACgtgtattttactgaccagTCTGCA
AAATACCAAATACTTAAGTGACTGACAAACCAGCCTTCAAAACTaatttc
aatcaaatcaaacAAGTCGATCGGTCAATCGGTGCAGGCACaacgcaccg
ggtacggcaggtacggcggCCGTCGGGAGAGCTTTCACGAATCCAATTAT
AGAAATGACTTAATATTgttattttggtcatttttttgtgtttttatgac
TGTTATATATAATATGATAAACAAGAAACAATATGAAGATGGCTTTTTTT
AAGTTATTGATTTTTTATACATGTACAATGTGCAATTTATTAGTTTCGTC
CATACCTTGTTTATTATATTAGTTTTACAAAAAATCTGaatatttgaatg
aaaaataatacaaaaatacaTTGTGTTGACTAAATTTCTATTTC
Run BLAST on NCBI

protein sequence of TCONS_00070679-protein

>TCONS_00070679-protein ID=TCONS_00070679-protein|Name=TCONS_00070679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MANPKRPIGTASPNTINAVVPMCTNQSSSSKHGSSSPNNPDLASLFECPV
CFDYVLPPIFQCSSGHLVCSNCRPKLAGICPTCRGPLGSIRNLAMEKVAN
TVLFPCRYANNGCIVALPHTQKSEHEEGCEFRPYACPCPGASCKWQGSLD
AVMPHLVHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLV
LEKQERFEGHQQFFAVVQLIGSRKQAENFAYRLELNGRRRRLAWEATPRS
IHDGIQSAIINSDCLVFDTSIAQLFAEAGNLGINVTISMC
Run BLAST on NCBI

transcript from alignment at scaffold_57:422592..426347-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070679 ID=TCONS_00070679|Name=TCONS_00070679|organism=Clytia hemisphaerica|type=transcript|length=3756bp|location=Sequence derived from alignment at scaffold_57:422592..426347- (Clytia hemisphaerica)
AGACATGTCATATATTATCTGCAGAGAAGAGTAAACAATTTTCACTGAAT
TTGATAGTAGTAAATTTAACTGGAAATAAATTAATCCTTTTTTTAAGTGA
GAATAAAACAAAAAAAATATGGATTGAATTAAAACAATAATTTGAGTAAA
ATCAACTTTTGTCATGGCTAACCCTAAAAGACCAATAGGGACTGCAAGCC
CTAACACCATCAATGCAGTTGTGCCTATGTGTACAAACCAAAGTAGCTCA
TCAAAGCATGGTAGTTCTAGTCCAAACAACCCTGATTTGGCATCATTATT
TGAATGTCCAGTTTGTTTTGATTATGTTTTACCGCCAATTTTCCAATGTA
GCAGTGGGCATTTAGTATGTTCAAATTGTCGGCCAAAATTGGCAGGAATC
TGTCCAACATGTAGAGGACCTTTAGGGAGTATTCGTAATTTGGCAATGGA
AAAAGTTGCAAATACTGTTTTGTTTCCATGCCGTTATGCAAATAATGGAT
GTATTGTTGCTTTACCGCATACACAGAAAAGTGAACACGAAGAAGGATGT
GAGTTTCGTCCTTATGCTTGTCCTTGTCCTGGAGCATCATGCAAATGGCA
AGGTTCTTTAGATGCAGTCATGCCTCATTTAGTACATGCGCACAAGTCAA
TAACAACATTACAGGGTGAAGATATTGTATTTTTAGCGACAGACATTAAT
TTACCAGGTGCGGTTGATTGGGTTATGATGCAATCATGTTTTGGCCATCA
CTTCATGTTGGTCCTGGAAAAACAAGAACGATTTGAAGGACATCAACAAT
TTTTTGCTGTGGTTCAACTGATAGGGAGCCGAAAACAAGCTGAAAATTTT
GCTTACAGACTTGAATTGAATGGCCGTCGAAGGAGGCTTGCATGGGAAGC
TACCCCAAGAAGCATCCATGATGGGATCCAATCAGCAATCATTAATAGTG
ATTGCCTGGTGTTTGATACCAGCATTGCTCAATTATTTGCTGAAGCTGGT
AATCTTGGCATTAATGTGACTATCTCAATGTGTTGAGATGAACTAGTGTA
GTTAGATTATGCATTTGAAAACAAAGAAGTGGATATGATGAATTAAACTG
GGGTAATAAATTCATATTCAATTCATGAATGCTGGTTTATATGAAAAGTT
TTTATAATTTTGAGAGGTATCATGAAACATGTTTTACTGCAGCTTGTTTA
CTTCAACCTGTTAGAAAATCTTACAGCGCCAACTTTTTTAGATTATTTTT
ACAGAATTTCGCTTCTATTTTATGGAACAGCTTCCTTGGTTATTCCTTTT
TAACATTTTCATCTTTGGTCTAGCTTTTATCAATGTACGAATCAGCCTTT
TAAATTTCAAATAAAAAAGGTTTTTTTAATCTAGGNGGGAGTATTCGTAA
TTTGGCAATGGAAAAAGTTGCAAATACTGTTTTGTTTCCATGCCGTTATG
CAAATAATGGATGTATTGTTGCTTTACCACATACACAGAAAAGTGAACAC
GAAGAAGGGTGTGAGTTTCGTCCTTATGCTTGTCCTTGTCCTGGAGCATC
ATGCAAATGGCAAGGTTCTTTAGATGCAGTCATGCCTCATTTAGTACATG
CGCACAAGTCAATAACAACATTACAGGGTGAAGATATTGTATTTTTAGCG
ACAGACATTAATTTACCAGGTGCGGTTGATTGGGTTATGATGCAATCATG
TTTTGGCCATCACTTCATGTTGGTCCTGGAAAAACAAGAACGATTTGAAG
GACATCAACAATTTTTTGCTGTGGTTCAACTGATAGGGAGCCGAAAACAA
GCTGAAAATTTTGCTTACAGACTTGAATTGAATGGCCGTCGAAGGAGGCT
TGCATGGGAAGCTACCCCAAGAAGCATCCATGATGGGATCCAATCAGCAA
TCATTAATAGTGATTGCCTGGTGTTTGATACCAGCATTGCTCAATTATTT
GCTGAAGCTGGTAATCTTGGCATTAATGTGACTATCTCAATGTGTTGAGA
TGAACTAGTGTAGTTAGATTATGCATTTGAAAACAAAGAAGTGGATATGA
TGAACTAAACTGGGGTAATAAATTCATATTCAATTCATGAATGCTGGTTT
ATATGAAAAGTTTTTATAATTTTGAGAGGTATCATGAAACATGTTTTACT
GCAGCTTGTTTACTTCAACCTGTTAGAAAATCTTACAGCGCCAACTTTTT
TAGATTATTTTTACAGAATTTCGCTTCTATTTTATGGAATAGCTTCCTTG
GTTATTCCTTTTTAACATTTTCATCTTTGGTCTAGCTTTTATCAATGTAC
GAATCAGCCTTTTAAATTTCAAATTGAAAAGGTTTTTTTAATCTAGATGG
AAAAATTCACATTTTTACATGAAATGATTTGTTCTTTGCAAAATGTTTTG
GTTCAATGAAAGTTTCGATGATTTTGCATTTGAATACACCTATAAACCCT
TAAAGCCTAAGGAGACTTTAGAGTTTCACAGGCGGTACGAACTTCAAAGC
TCTTTGATGATGAGTAAATATCAATGCACAGCTTTAAGGGGTAATTAATC
TCACAAGAGATCATCCATTCTGCACATACCACGCTCTGCTCCAAAGGACT
AAGGTGAATTTGGCAATCTGACTTGGTGTTTCAGAAAAGCGAAACTATCA
AAATGGCAATACCTTTGCTTGAAGGAGAAAGCGACTGGGTCCTAATGCGA
TTGGTTTAAAGTTCAAAGTGGTGCGCCAACCTGAGCAGATTCTTTTACTG
AGCCATGGCCTTTAGAGTAAATACCTGCCATGCGCGGAGTATAAGAATTT
ATTCGTAGATTAAGAGTTGATAGGTGTATTAGAACTAACTTGATCACTGA
GATTGTTTACTTTTATCATGTATGTTAAGGTCTGGTAAGGAATCTATTCT
TGTACATATTTATTTTGAAATTATACATTTTTAGCAGTTTTTTTCTTGTT
CCTTTGATAGATTTGATACTTAGTTTTTTTTCAGTTCCAGGTGCTTTGTT
TGGTATTATTTTTCCCATGATATTTTGAAATTTCATTATTCAAGACATTT
TTAAAATAGTTACATAGCTACTCTTCAAGCATTTCGGGGGCGAAAATATT
TATCCAATTGGCTTAAAAGCTTGCAAGTCTGCACCAAATTTGAACTATTT
GAGTCTTTGATACTTTGTAAATGCCAAAAATAGGACCCCCACTATTTTTT
TGGTAAAATATGGACCGGTTTTTAAAATACCAACTACGTGACCAAACTAA
AAATTTGCCTTAAATGGTCAATATCCTGTCACTGGTGAAAATTTCAAGTC
AAAGGCTCCTGTAGTTCCTAAGTGCCTGCAGGGTTGACGTGTATTTTACT
GACCAGTCTGCAAAATACCAAATACTTAAGTGACTGACAAACCAGCCTTC
AAAACTAATTTCAATCAAATCAAACAAGTCGATCGGTCAATCGGTGCAGG
CACAACGCACCGGGTACGGCAGGTACGGCGGCCGTCGGGAGAGCTTTCAC
GAATCCAATTATAGAAATGACTTAATATTGTTATTTTGGTCATTTTTTTG
TGTTTTTATGACTGTTATATATAATATGATAAACAAGAAACAATATGAAG
ATGGCTTTTTTTAAGTTATTGATTTTTTATACATGTACAATGTGCAATTT
ATTAGTTTCGTCCATACCTTGTTTATTATATTAGTTTTACAAAAAATCTG
AATATTTGAATGAAAAATAATACAAAAATACATTGTGTTGACTAAATTTC
TATTTC

Coding sequence (CDS) from alignment at scaffold_57:422592..426347-

>TCONS_00070679 ID=TCONS_00070679|Name=TCONS_00070679|organism=Clytia hemisphaerica|type=CDS|length=873bp|location=Sequence derived from alignment at scaffold_57:422592..426347- (Clytia hemisphaerica)
ATGGCTAACCCTAAAAGACCAATAGGGACTGCAAGCCCTAACACCATCAA
TGCAGTTGTGCCTATGTGTACAAACCAAAGTAGCTCATCAAAGCATGGTA
GTTCTAGTCCAAACAACCCTGATTTGGCATCATTATTTGAATGTCCAGTT
TGTTTTGATTATGTTTTACCGCCAATTTTCCAATGTAGCAGTGGGCATTT
AGTATGTTCAAATTGTCGGCCAAAATTGGCAGGAATCTGTCCAACATGTA
GAGGACCTTTAGGGAGTATTCGTAATTTGGCAATGGAAAAAGTTGCAAAT
ACTGTTTTGTTTCCATGCCGTTATGCAAATAATGGATGTATTGTTGCTTT
ACCGCATACACAGAAAAGTGAACACGAAGAAGGATGTGAGTTTCGTCCTT
ATGCTTGTCCTTGTCCTGGAGCATCATGCAAATGGCAAGGTTCTTTAGAT
GCAGTCATGCCTCATTTAGTACATGCGCACAAGTCAATAACAACATTACA
GGGTGAAGATATTGTATTTTTAGCGACAGACATTAATTTACCAGGTGCGG
TTGATTGGGTTATGATGCAATCATGTTTTGGCCATCACTTCATGTTGGTC
CTGGAAAAACAAGAACGATTTGAAGGACATCAACAATTTTTTGCTGTGGT
TCAACTGATAGGGAGCCGAAAACAAGCTGAAAATTTTGCTTACAGACTTG
AATTGAATGGCCGTCGAAGGAGGCTTGCATGGGAAGCTACCCCAAGAAGC
ATCCATGATGGGATCCAATCAGCAATCATTAATAGTGATTGCCTGGTGTT
TGATACCAGCATTGCTCAATTATTTGCTGAAGCTGGTAATCTTGGCATTA
ATGTGACTATCTCAATGTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043972XLOC_043972Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070679-proteinTCONS_00070679-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070679-exon-scaffold_57-1575043694:424964..426347TCONS_00070679-exon-scaffold_57-1575043694:424964..426347Clytia hemisphaericaexon
TCONS_00070679-exon-scaffold_57-1575043694:422592..424001TCONS_00070679-exon-scaffold_57-1575043694:422592..424001Clytia hemisphaericaexon
TCONS_00070679-exon-scaffold_57-1510915933:424964..426347TCONS_00070679-exon-scaffold_57-1510915933:424964..426347Clytia hemisphaericaexon
TCONS_00070679-exon-scaffold_57-1510915933:422592..424001TCONS_00070679-exon-scaffold_57-1510915933:422592..424001Clytia hemisphaericaexon
TCONS_00070679-exon-scaffold_57-1491911889:424964..426347TCONS_00070679-exon-scaffold_57-1491911889:424964..426347Clytia hemisphaericaexon
TCONS_00070679-exon-scaffold_57-1491911889:422592..424001TCONS_00070679-exon-scaffold_57-1491911889:422592..424001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:422592..426347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.32588	3.14957	6.46961	8.18933	18.3783	12.8649	16.1742	17.3995	10.7125	13.9812	10.547	9.5317	8.05951	7.46318	7.56979	8.48039	10.2411	10.9649	6.49714	8.09139	8.65177	9.76691	9.22664	9.94777	8.24141	9.06917	18.3297	17.1183	21.6821	19.8297
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR0181217-in-absentia-prot_TRAF-dom
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR013010Znf_SIAH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0007275multicellular organism development
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00070679 vs. Swiss-Prot (Human)
Match: SIAH1 (E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2)

HSP 1 Score: 469.544 bits (1207), Expect = 4.145e-158
Identity = 219/253 (86.56%), Postives = 238/253 (94.07%), Query Frame = 2 
Query:  275 NNPDLASLFECPVCFDYVLPPIFQCSSGHLVCSNCRPKLAGICPTCRGPLGSIRNLAMEKVANTVLFPCRYANNGCIVALPHTQKSEHEEGCEFRPYACPCPGASCKWQGSLDAVMPHLVHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQERFEGHQQFFAVVQLIGSRKQAENFAYRLELNGRRRRLAWEATPRSIHDGIQSAIINSDCLVFDTSIAQLFAEAGNLGINVTISMC 1033
            +N DLASLFECPVCFDYVLPPI QC SGHLVCSNCRPKL   CPTCRGPLGSIRNLAMEKVAN+VLFPC+YA++GC + LPHT+K++HEE CEFRPY+CPCPGASCKWQGSLDAVMPHL+H HKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQE+++GHQQFFA+VQLIG+RKQAENFAYRLELNG RRRL WEATPRSIH+GI +AI+NSDCLVFDTSIAQLFAE GNLGINVTISMC
Sbjct:   31 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLT-CCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282
The following BLAST results are available for this feature:
BLAST of TCONS_00070679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIAH14.145e-15886.56E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens ... [more]
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