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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070621 ID=TCONS_00070621|Name=TCONS_00070621|organism=Clytia hemisphaerica|type=transcript|length=2374bpRun BLAST on NCBI transcript from alignment at scaffold_57:156170..171112+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070621 ID=TCONS_00070621|Name=TCONS_00070621|organism=Clytia hemisphaerica|type=transcript|length=14943bp|location=Sequence derived from alignment at scaffold_57:156170..171112+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070621 vs. Swiss-Prot (Human)
Match: HEXB (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3) HSP 1 Score: 479.559 bits (1233), Expect = 1.343e-159 Identity = 243/505 (48.12%), Postives = 325/505 (64.36%), Query Frame = 3
Query: 207 SLFPKPQEETKDATKLMSLDPEKFSFTKT-----GEDSDVIQAALVRYKMIAFPDAQVGGADSNY---PQITGLNVHIIQPYKAMDF---KMDESYNLVIAAPMASIEANTVWGALRGLETFSQAVYQNISDKYYVNSNKIHDFPRFHHRGFLIDTSRHYLSVQTIEQFIDALAYSKYNVLHWHIVDETSFPFVSKTFPSLSEMGSFNSTTHVYNPEDVQRVIEYARMRGVRVLPEFDTPGHSDSW-YSIENLLTKCYSSGKPNGNTGPIDPTVESNYEFLKNFFKEVAEVFPDAYLHLGGDEVSFSCWESNPNIAKWMADHDMGKNYSLLEQYYEQRLLDIVGALGKNYVIWQEVVDNQVKVKADTVVNIWRGHNDEWKAEAKKITTLGYNVILSSPWYLNYISYAQDWPTYYKADPQSFDGTQEQLDLVLGGTACMWGEWVDATNLLARTWARALAVGERLWSAKTVTDVSDAGLRMWEHRCRYLRRGIPAENVISSNYCRHE 1685
+L+P P K L+ L PE F + + G +++ A RY F + + + Q+ L V I + F DESY L++ P+A ++AN VWGALRGLETFSQ VYQ+ + +N + I D PRF HRG LIDTSRHYL V+ I + +DA+A++K+NVLHWHIVD+ SFP+ S TFP LS GS+ S +HVY P DV+ VIEYAR+RG+RVLPEFDTPGH+ SW ++LLT CYS + GPI+PT+ + Y FL FFKE++EVFPD ++HLGGDEV F CWESNP I +M G ++ LE +Y Q++LDI+ + K ++WQEV D++ K+ T+V +W+ + + E ++T G+ VILS+PWYL+ ISY QDW YYK +P F GTQ+Q L +GG AC+WGE+VDATNL R W RA AVGERLWS+K V D+ DA R+ HRCR + RGI A+ + + YC HE
Sbjct: 55 ALWPLPLS-VKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQAKTQVQQLLVSITLQSECDAFPNISSDESYTLLVKEPVAVLKANRVWGALRGLETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSY-SLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLTPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVFDDKAKLAPGTIVEVWK--DSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQP-LYAGYCNHE 554 The following BLAST results are available for this feature:
BLAST of TCONS_00070621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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