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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007005 ID=TCONS_00007005|Name=TCONS_00007005|organism=Clytia hemisphaerica|type=transcript|length=1362bp
ATACCCTCGAATTCATGGAAGAGACGGATGTTGATGGGATGAAAGAAGCT
TTGAATAAAGAATCGCCGACACATATGGGTGGCTTACTGTCAACGAATTT
AAGGCAAGCGATCTTACATCCGGAGACGTGGAGGAAAAGAGGCTTAAGAG
GGCTATTAAAAATGCAGAGCAAGTTAAAGAACGTATATATAAAAAGCCAA
GAATAGAGGAACCTGATGGAGAATACTCCAAGGCAATCAAATCTAGAACT
GAACAAAGGAGCCGTATGGATGAGGTGGTCTGTTATTCATGCAAAAGAGT
AGGGCACTACGTCAGCCACTGTCCTTTTTCTGAATCTTCGTCACCTTTGG
CCCACTCGACAAAATTAATGTCCTCATCAACAGCAACAAAAAGTTCGTCG
TCCAATTCAAATTCTAAATCGTCAAGGGATGGAAAATAActttaacaaaa
aatataagatTTCATNACTCGACAAAGTTAATGTCCTCACCAACAGCAAC
AAAAAGTTCGTCGTCCAATTCAAATTCTAAATCGTCAAGGGATGGAAAAT
AACTTTAAcaaaaaatagaagattttcaGATATTCAGaacaattttttca
acttttgaaatacagtagCTAATTTACGTTGCgttagttttaaaaattga
ttaCAATTTTGTCTTGTTGTAATTAGATTAGTATTAATGAGAGCTGATGA
TATAAATGTACCTGATCTTCTATTCTATTTCAACTGTGCCATTTTACCTT
CTTTAATAATAAATGTCAAAAATGGATGATGCAACAAATTATCAAAACTT
CTCTCCTTCGTTTTGCTAATTTACCTCACTGGGATAAAAGACGATTAATA
AATTTTGACGTTATTCAAGAACTTCAATTTTTGCAAACCAatttaaaaaa
cgtaaaagcttTTAGAATTAAAACCAAACCAGGAATTACGAAGGTCATCT
TTTCGGACGCAAGTGGTACAGGCTATGGAGGTTACGCGGTCGAAAAGTTA
GGAAACATCATAgcaaaaggaaatttttgtaGACATGAAATACAACTAGC
TCAACTTTTCGTGAAACTAATAAAACAGCAGATTTGATTTCCAAATCTAC
CGACACAGATAATTGGTCTATCGATAATGAGATTTTTAATTATATAATCA
AAAACTATGGACAAATTACTATCGATCGAATTTCCAATAACCAAAACGCT
AAGGCAACTGTTCTAATTCTCGTGAGTATTACCCAGAAACATCCACGTTC
AACGCTGTTTCCTGTAATTGGGGAAACAATGAGTTCAACTGGCTTTGTCG
TCCAATATCGCTCGTAGGTAAAACAATTCAGCATCTGAAAAACCGTAGAG
GTAAAGgcatac Run BLAST on NCBI protein sequence of TCONS_00007005-protein >TCONS_00007005-protein ID=TCONS_00007005-protein|Name=TCONS_00007005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MMQQIIKTSLLRFANLPHWDKRRLINFDVIQELQFLQTNLKNVKAFRIKT
KPGITKVIFSDASGTGYGGYAVEKLGNIIAKGNFCRHEIQLAQLFVKLIK
QQI Run BLAST on NCBI transcript from alignment at sc0000073:49551..50949+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007005 ID=TCONS_00007005|Name=TCONS_00007005|organism=Clytia hemisphaerica|type=transcript|length=1399bp|location=Sequence derived from alignment at sc0000073:49551..50949+ (Clytia hemisphaerica)
ATACCCTCGAATTCATGGAAGAGACGGATGTTGATGGGATGAAAGAAGCT
TTGAATAAAGGTAAGAGATTACTAGAGACTCGTATTCAACATATTAGAAT
CGCCGACACATATGGGTGGCTTACTGTCAACGAATTTAAGGCAAGCGATC
TTACATCCGGAGACGTGGAGGAAAAGAGGCTTAAGAGGGCTATTAAAAAT
GCAGAGCAAGTTAAAGAACGTATATATAAAAAGCCAAGAATAGAGGAACC
TGATGGAGAATACTCCAAGGCAATCAAATCTAGAACTGAACAAAGGAGCC
GTATGGATGAGGTGGTCTGTTATTCATGCAAAAGAGTAGGGCACTACGTC
AGCCACTGTCCTTTTTCTGAATCTTCGTCACCTTTGGCCCACTCGACAAA
ATTAATGTCCTCATCAACAGCAACAAAAAGTTCGTCGTCCAATTCAAATT
CTAAATCGTCAAGGGATGGAAAATAActttaacaaaaaatataagatTTC
ATNACTCGACAAAGTTAATGTCCTCACCAACAGCAACAAAAAGTTCGTCG
TCCAATTCAAATTCTAAATCGTCAAGGGATGGAAAATAACTTTAAcaaaa
aatagaagattttcaGATATTCAGaacaattttttcaacttttgaaatac
agtagCTAATTTACGTTGCgttagttttaaaaattgattaCAATTTTGTC
TTGTTGTAATTAGATTAGTATTAATGAGAGCTGATGATATAAATGTACCT
GATCTTCTATTCTATTTCAACTGTGCCATTTTACCTTCTTTAATAATAAA
TGTCAAAAATGGATGATGCAACAAATTATCAAAACTTCTCTCCTTCGTTT
TGCTAATTTACCTCACTGGGATAAAAGACGATTAATAAATTTTGACGTTA
TTCAAGAACTTCAATTTTTGCAAACCAatttaaaaaacgtaaaagcttTT
AGAATTAAAACCAAACCAGGAATTACGAAGGTCATCTTTTCGGACGCAAG
TGGTACAGGCTATGGAGGTTACGCGGTCGAAAAGTTAGGAAACATCATAg
caaaaggaaatttttgtaGACATGAAATACAACTAGCTCAACTTTTCGTG
AAACTAATAAAACAGCAGATTTGATTTCCAAATCTACCGACACAGATAAT
TGGTCTATCGATAATGAGATTTTTAATTATATAATCAAAAACTATGGACA
AATTACTATCGATCGAATTTCCAATAACCAAAACGCTAAGGCAACTGTTC
TAATTCTCGTGAGTATTACCCAGAAACATCCACGTTCAACGCTGTTTCCT
GTAATTGGGGAAACAATGAGTTCAACTGGCTTTGTCGTCCAATATCGCTC
GTAGGTAAAACAATTCAGCATCTGAAAAACCGTAGAGGTAAAGgcatac Coding sequence (CDS) from alignment at sc0000073:49551..50949+ >TCONS_00007005 ID=TCONS_00007005|Name=TCONS_00007005|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000073:49551..50949+ (Clytia hemisphaerica)
ATGATGCAACAAATTATCAAAACTTCTCTCCTTCGTTTTGCTAATTTACC
TCACTGGGATAAAAGACGATTAATAAATTTTGACGTTATTCAAGAACTTC
AATTTTTGCAAACCAatttaaaaaacgtaaaagcttTTAGAATTAAAACC
AAACCAGGAATTACGAAGGTCATCTTTTCGGACGCAAGTGGTACAGGCTA
TGGAGGTTACGCGGTCGAAAAGTTAGGAAACATCATAgcaaaaggaaatt
tttgtaGACATGAAATACAACTAGCTCAACTTTTCGTGAAACTAATAAAA
CAGCAGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007005-exon-sc0000073-1491911889:49551..49610 | TCONS_00007005-exon-sc0000073-1491911889:49551..49610 | Clytia hemisphaerica | exon |
| TCONS_00007005-exon-sc0000073-1510915933:49551..49610 | TCONS_00007005-exon-sc0000073-1510915933:49551..49610 | Clytia hemisphaerica | exon |
| TCONS_00007005-exon-sc0000073-1575043694:49551..49610 | TCONS_00007005-exon-sc0000073-1575043694:49551..49610 | Clytia hemisphaerica | exon |
| TCONS_00007005-exon-sc0000073-1491911889:49648..50949 | TCONS_00007005-exon-sc0000073-1491911889:49648..50949 | Clytia hemisphaerica | exon |
| TCONS_00007005-exon-sc0000073-1510915933:49648..50949 | TCONS_00007005-exon-sc0000073-1510915933:49648..50949 | Clytia hemisphaerica | exon |
| TCONS_00007005-exon-sc0000073-1575043694:49648..50949 | TCONS_00007005-exon-sc0000073-1575043694:49648..50949 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:49551..50949 + |
Blast
The following BLAST results are available for this feature:
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