TCONS_00070328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070328
Unique NameTCONS_00070328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070328 ID=TCONS_00070328|Name=TCONS_00070328|organism=Clytia hemisphaerica|type=transcript|length=740bp
CCAGAACCGTCCAAACGTGCAAGTTTTATCGAATTTCGATCAAATAGTAA
TGGtttatgaagaagaaaaaatgaagctgTTTCTCAGAGGAAAACATCTT
ACAACAGTCTCCTTAGTAGACGCTGTGCCAACCATGTTGGCTTACTACTA
TCTTTTCGACATGGATTACCCGCTTAATTATGATACTGGTTTCCATTTTT
TGCAATACGTTATCTTTGGTGATTCTATCGTCCCAAAGAACTTGGAGAAA
ACGTTGGACAATTTCAACGACGCATATTCTAAATTTAAGATTGAACGGTT
GAGACAGTAGTTGGTGATTCTATCGTCCCAAAGAACTTGGAGAAAACGTT
GGACAATTTCGACGACGCATATTCTAAATTTAAGATTGAACGGTTGAGAC
AGTAGTTGCCGAGTTATATTTTGATTAGGTTTTTTTTGCATAACGTTATA
TTTCATGTACATACAGATGCGGTAGTTGCCGAGTTatattttatcttaat
ttttttgcattACGTTATAGTTCGTTCACTCTAACTTGGTTAATGACTAA
TGACTTTCAAGTGGAATTCTTTTCTTTCAACtattaaaaaatggaaattg
agtgtttgtaaaaaagtcattaaCCAAGTTAGAGTGAACGAACTGTACAT
TTTTTCATATACATAGTAGGAaacattttggcgggaatttagtTGTAATT
TATGTTGTAATTCTTTTCTCGCATTTTACATAAGGAGGAG
Run BLAST on NCBI

protein sequence of TCONS_00070328-protein

>TCONS_00070328-protein ID=TCONS_00070328-protein|Name=TCONS_00070328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
QNRPNVQVLSNFDQIVMVYEEEKMKLFLRGKHLTTVSLVDAVPTMLAYYY
LFDMDYPLNYDTGFHFLQYVIFGDSIVPKNLEKTLDNFNDAYSKFKIERL
RQ
Run BLAST on NCBI

transcript from alignment at scaffold_53:24362..25101

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070328 ID=TCONS_00070328|Name=TCONS_00070328|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at scaffold_53:24362..25101 (Clytia hemisphaerica)
CTCCTCCTTATGTAAAATGCGAGAAAAGAATTACAACATAAATTACAact
aaattcccgccaaaatgttTCCTACTATGTATATGAAAAAATGTACAGTT
CGTTCACTCTAACTTGGttaatgacttttttacaaacactcaatttccat
tttttaataGTTGAAAGAAAAGAATTCCACTTGAAAGTCATTAGTCATTA
ACCAAGTTAGAGTGAACGAACTATAACGTaatgcaaaaaaattaagataa
aatatAACTCGGCAACTACCGCATCTGTATGTACATGAAATATAACGTTA
TGCAAAAAAAACCTAATCAAAATATAACTCGGCAACTACTGTCTCAACCG
TTCAATCTTAAATTTAGAATATGCGTCGTCGAAATTGTCCAACGTTTTCT
CCAAGTTCTTTGGGACGATAGAATCACCAACTACTGTCTCAACCGTTCAA
TCTTAAATTTAGAATATGCGTCGTTGAAATTGTCCAACGTTTTCTCCAAG
TTCTTTGGGACGATAGAATCACCAAAGATAACGTATTGCAAAAAATGGAA
ACCAGTATCATAATTAAGCGGGTAATCCATGTCGAAAAGATAGTAGTAAG
CCAACATGGTTGGCACAGCGTCTACTAAGGAGACTGTTGTAAGATGTTTT
CCTCTGAGAAAcagcttcattttttcttcttcataaaCCATTACTATTTG
ATCGAAATTCGATAAAACTTGCACGTTTGGACGGTTCTGG

Coding sequence (CDS) from alignment at scaffold_53:24362..25101

>TCONS_00070328 ID=TCONS_00070328|Name=TCONS_00070328|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_53:24362..25101 (Clytia hemisphaerica)
CTACTGTCTCAACCGTTCAATCTTAAATTTAGAATATGCGTCGTTGAAAT
TGTCCAACGTTTTCTCCAAGTTCTTTGGGACGATAGAATCACCAAAGATA
ACGTATTGCAAAAAATGGAAACCAGTATCATAATTAAGCGGGTAATCCAT
GTCGAAAAGATAGTAGTAAGCCAACATGGTTGGCACAGCGTCTACTAAGG
AGACTGTTGTAAGATGTTTTCCTCTGAGAAAcagcttcattttttcttct
tcataaaCCATTACTATTTGATCGAAATTCGATAAAACTTGCACGTTTGG
ACGGTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043802XLOC_043802Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070328-proteinTCONS_00070328-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070328-exon-scaffold_53-1491911889:24362..25101TCONS_00070328-exon-scaffold_53-1491911889:24362..25101Clytia hemisphaericaexon
TCONS_00070328-exon-scaffold_53-1510915933:24362..25101TCONS_00070328-exon-scaffold_53-1510915933:24362..25101Clytia hemisphaericaexon
TCONS_00070328-exon-scaffold_53-1575043694:24362..25101TCONS_00070328-exon-scaffold_53-1575043694:24362..25101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:24362..25101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133626	0.19546	0	0	1.17132	0.569593	0.601291	1.28668	0.506719	1.25531	1.62457	1.33491	2.66612	1.10752	1.36579	1.34356	0.55172	0.719721	0.56819	0.891855	0.258395	0.850742	0.0766066	1.25364	3.94538	3.07301	0.549684	0.195546	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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