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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070118 ID=TCONS_00070118|Name=TCONS_00070118|organism=Clytia hemisphaerica|type=transcript|length=2619bpRun BLAST on NCBI transcript from alignment at scaffold_513:411595..414924- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070118 ID=TCONS_00070118|Name=TCONS_00070118|organism=Clytia hemisphaerica|type=transcript|length=3330bp|location=Sequence derived from alignment at scaffold_513:411595..414924- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070118 vs. Swiss-Prot (Human)
Match: SHOC2 (Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 2.149e-38 Identity = 133/404 (32.92%), Postives = 195/404 (48.27%), Query Frame = 2
Query: 347 LPEETNRFINLVKFSISGNNLSTLP-DIQQLVCLKELNLDENSLISLPDTLGELQALEKLSMIGNRLKTLPESLGKLKSLRELYIDENDLAVINFSFQNLEHLEIFEATNNKLEVLSEDIGCAKKLRILNLNHNQLLTLPESISDLEAVEILDLSNNLLKELPERFASSKRLVKFMAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFDDEFCSNAPNLRILEAGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLP-DSFCELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRNLEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQALDLFSNELEALPEVIFQLKKLTRLDLDRN 1552
LP L + + N L +LP ++ LV L L L ENSL SLPD+L L+ L L + N+L+ +P + +L SL LY+ N + + +NL L + NK++ L +IG L L++ HNQL LP+ I + + LDL +N L +LP+ + L + N P +EE+ L +N+++ P + S+ L L N F L F STI L H N + K+P F K L+K N+ +NQL LP FG S+ L+L N + +P L +LE L LS N L++LP +GN +KL EL L+ N L+++P+ + +K LQ L L +N+L LP I L LT L L N
Sbjct: 115 LPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLP--ESLLSSLVKLNSLTLARNC-------FQLYPVGGPSQF-STIYSLNMEH----NRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGEN 504 HSP 2 Score: 132.88 bits (333), Expect = 3.175e-32 Identity = 128/432 (29.63%), Postives = 207/432 (47.92%), Query Frame = 2
Query: 332 NDFDELPEETNRFINLVKFSISGNNLSTLPD-IQQLVCLKELNLDENSLISLPDTLGELQALEKLSMIGNRLKTLPESLGKLKSLRELYIDENDLAVINFSFQNLEHLEIFEATNNKLEVLSEDIGCAKKLRILNLNHNQLLTLPESISDLEAVEILDLSNNLLKELPERFASSKRLVKFMAENNTFKYFP-FWFCDLPKIEEMYLSDNSVTLEP------FDDEFCSNAPNLRI------LEAGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFCELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRNLEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQALDLFSN-ELEALPEVIFQLKKLTRLDLDRNNFNMSLADVP 1582
N LP E +NL+ ++S N+L++LPD + L L+ L+L N L +P + L +L L + NR+ T+ + + L L L I EN + + L +L + +N+LE L ++IG ++ L+L HN+LL LP++I +L ++ L L N L +P A L + ENN P L K+ + L+ N L P F + N + RI + + A +S ++ K L+ L + FG+ +E + N + K+P+ L L ++ N L LP G L L LDL +N + LP+ L++L+ L L+ NQL LP IG+ L L L N+L +P+ +GT++ L+ L L N L +LP F+L ++L + MS+ + P
Sbjct: 133 NKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLP-LDFGTWTSMVELNLATN--QLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLP---FELALCSKLSI------MSIENCP 552 HSP 3 Score: 87.4261 bits (215), Expect = 1.022e-17 Identity = 85/281 (30.25%), Postives = 132/281 (46.98%), Query Frame = 2
Query: 329 YNDFDELPEETNRFINLVKFSISGNNLSTLPD-IQQLVCLKELNLDENSLISLPDTLGELQALEKLSMIGNRLKTLPE----SLGKLKSLR------ELY---------------IDENDLAVINFS-FQNLEHLEIFEATNNKLEVLSEDIGCAKKLRILNLNHNQLLTLPESISDLEAVEILDLSNNLLKELPERFASSKRLVKFMAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFDDEFCSNAPNLRILEAGANYMSSISEKFGLLSKLEQVHF 1090
+N + LP+E + + N L LPD I L L L L N L ++P +L + ALE+L++ N + TLPE SL KL SL +LY ++ N + I F F + L +N+L L D G + LNL NQL +PE +S L ++E+L LSNNLLK+LP + ++L + E N + P L ++++ L++N +T P + NL L G N ++ + E+ G L LE+++
Sbjct: 247 HNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLP---RGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYL 524 HSP 4 Score: 87.0409 bits (214), Expect = 1.564e-17 Identity = 88/373 (23.59%), Postives = 153/373 (41.02%), Query Frame = 2
Query: 590 LYIDENDLAVINFSFQNLEHLEIFEATNNKLEVLSEDIGCAKKLRILNLNHNQLLTLPESISDLEAVEILDLSNNLLKELPERFASSKRLVKFMAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFD-DEFCSNAPNLRILEAGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFCELKHLNKANINENQLNCLPERFG---------------------------ELESLTW---------------------LDLGQNMIRHLP-STFCELRNLEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQALDLFSNELEALPEVIFQLKKLTRLDLDRNNF 1558
L + + + ++ S + L L +NKL+ L ++GC L L L+ N L +LP+S+ +L+ + +LDL +N L+E+P L N +L K+ + + +N + P + E C NL L+ N + + ++ G ++ I L+ H N ++ LPD+ L L++ + N+L+ +P +L SLT L++ N I +P F + L L + NQL LP + G + ++EL L N L +P+ + + L+ L L +N L+ LP + L+KL LDL+ N
Sbjct: 105 LDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGELC----NLITLDVAHNQLEHLPKEIGNCTQ---------ITNLDLQH----NELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKL 460 The following BLAST results are available for this feature:
BLAST of TCONS_00070118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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