TCONS_00070068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070068
Unique NameTCONS_00070068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070068 ID=TCONS_00070068|Name=TCONS_00070068|organism=Clytia hemisphaerica|type=transcript|length=599bp
CTTTTTTGACTGAATCATAAGTCACCAAGTCAATTCAAGATGTTAACATA
CCAGTGGTGAGCTGTTCACTACATAGCTTGTCGATTGTTTGGTCTGCGAT
TTCTTCATTGGACAAGCCTGAAAGTCAGTAAAGTGGGGAAAAAGGTATTA
CATACCAGTGGTGGCGGACTATGCGTTATGGTGCTTGTCAAATGTTTTGG
ATTTGATTTCTTTACTGGACAAGCCTGAATAAACAGAAGAAAAGGATATT
CAATCTAAACTACCTTTATCTGAGGATTAGAATAGGCGATTGGTACCATA
TcaatttcctgaaaaataaaCGAGAAGTCAGCATCATATCAAACTTGTTG
ATAGAGACATTCGATCGGACACTAGAAGGACAGTGTGAGTATCtagatta
atttttgaaaaaaaatctaatgaaatgaTAAGATGGCTCAATTTCAATTA
TGTTTTAACAAATTGTCAACATTAGAATAAATGGCAGGACATGAAAAAGT
TAAATTATGTCGTGAAAAATTGATCTTTTGAGCTACTAAGTTTGGTAACA
GATTCCTGCCTTACCTTCATTTCCTTCGATTTTCTTCATGGGGGAGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_513:121009..124282+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070068 ID=TCONS_00070068|Name=TCONS_00070068|organism=Clytia hemisphaerica|type=transcript|length=3274bp|location=Sequence derived from alignment at scaffold_513:121009..124282+ (Clytia hemisphaerica)
CTTTTTTGACTGAATCATAAGTCACCAAGTCAATTCAAGGTAAGTGtaac
ttttattacttttattatTTAGTAACCTATTATTTCTTCGACGGTTAAGT
TTGGTTAAGCTGGCCGATATTCCTGGTCTTGACTCTTCTGATTGGACATC
CTCTGTGCTGAACAACTGAAattgttgagaaaaaaattgtcataaATAAT
GGGTGGTTCAAGTTATAGTCGGTTACCCCCCTGTGGACGACATGGATTTT
CcgtaacaatttacttttgaaaaacttaagcATTTTCTtaacattcaaga
ttttttatgggaaaatcCATGATACTTGGCAAGAAAATAAAGCAAATCTT
ATGGACTTTTCGATACATATGACtaaataattaggaaaagtcctggattt
tccgaaacctttttcaaatttatcaggatttccaagtgaaaaaaaatcca
aaaaacccaGTCGTCCATAGCGGGTAATGGAACTGCCCCTACAATATACT
CTTCATTAGTAGAAAATACCTTATTGCCAGACAATCTCAACCGAACAGAA
CCGacaatcaaaccaaatcgaacgcaatcgaccgattgaaattttgacgt
cCGATTGAGATGATGAGATTGCGTTAGACAATCTAATTTCAATCAGTCGA
TTGCGTTNATTGAAATTTtgacgtttgattgagattcgattgcgttagAC
AATCTAATTTCAATCagtcgattgtgttcaatttggttcgatcgtcgatt
ccgttcgattgatatCGTCTGGTTACAGTATTGGAGAGGAactaattttt
agtgatttcgCTGTTTTTCGGCAAAACCACGAAAAATCTGAACCCGCAAG
taataattttttccaattttatcaaattgaaagctgagatatttgacttt
ttaaatctctaaaaataagtctttacacagtctttactttgaatttcttt
tgttatcaaGTAAAGTTTTTGAAGATCAAAGTCAAATATCCCGGCTTCAG
AAAATAATTGGGACAAAAACTTTGGAGGTGTTTCTTAGGACCATAACAGG
TAtatctctaagccaaatatcaaaaatcatctgatagTTCCTTTAAGGTT
AAATAAAAAGTTTGATATGGAAAAATTTTGACaggaatttttaaataaaa
aaagcatACTTTGCCATCTGATCTTCAGTGAACATGATGGTCATGATGCT
GTATACAAGTTTTTTCCAACACGTGAATGATTTCGACTTTAACATCaaga
atttgaatttattttctgtGACAATCAATGTTTTGGTGTAAGCCAGGGCC
CTTGgctaaaatcaaaagaaaactgaaAACTTAGCAAACAGGGCAgtgaa
aactcaaaatttcaatgaCTTTATAATGTCTTCAGGATGTCAAAAGActt
tacaaaatcaattttgtcattAAAAAGGTAGTGAAAGGTCAACTTCTTTG
TACTCACAAATTCATATAATTCTTGACTGTCATTGATGGAGTCCTATaat
aattaaaattatttgttCACTGTTTATTTCTCAACCTGTCTCAAACTATT
GAAATAGAACAGAATAGGATATCATTAGTTTCAGATGAAACTTGAGCAAA
ACTTTTGAATGGATCAATAAAAGCTTGGTTGTACAAACTTTTGTAAATTG
CAGGGGATTCACAGTGAAATTCCTGCTATCGTAAAAAACTTACCCTTCTT
TCTTGATTGCAGCGCTGGTCAGGAACctgaataaattgaaagtaAAGGTG
CACAGAACTTGAAAAAGTCTGCAAAAGTACTTATCTTAGTGATAGCTtat
aatcaaaattatttctgtGAAATTTGATTTTGCCACAATCTTTGCAAATT
CCAACTAATGTAAATTGGCTATGCTTGTGTTTTGGTCCCACCGTCGTGCC
ACGGTTATTCTCAAAGTAAAATCTTTATATTTAACATTAANGCCGCCGTG
GTGCCACGGttattctcaaaataaaatctttatatTTAACATTAACATAA
AGgatattaattatttttcatagATGTTAACATACCAGTGGTGAGCTGTT
CACTACATAGCTTGTCGATTGTTTGGTCTGCGATTTCTTCATTGGACAAG
CCTGAAAGTCAGTAAAGTGGGGAAAAAGGTAAGATGAAAATTTCCTATCA
TTTTAtgtggaaaagattttttcatataCTTTAGATACAACAAGTCTCTA
CCTTTTTATAGGTTTAATAATTGTTAAATTCATTCATCTGAAAGCTAACT
tagaaaattcttttgattatTCTTTAAAGGTATTACATACCGGTGGTGGC
GGACTATGCGTTATAGTGCTTGTCAAATGTTTTGGNAAAATTCTTTTGAT
TATTCTTTAAAGGTATTACATACCAGTGGTGGCGGACTATGCGTTATGGT
GCTTGTCAAATGTTTTGGATTTGATTTCTTTACTGGACAAGCCTGAATAA
ACAGAAGAAAAGGTAAGATTACTCATGGTTTATATGTTAAATCTAAACCa
gaagttttcttttcatttataGCACATATTTTTGTTGTAGATGTGGTACA
TAATTTAAGACCATGCAAATAATTTTTCCAGCCAAGTAGTTCACCAAGTT
ATTACAGAACATGAGCTgaaattgcttaaaaatttATTAATTGGTGTGTG
GGGGACTCGGGCCCTTTAAGAATGTTGGAAAGCTGGACTAGAGCCTCTTT
AAAATTAAGTTAATATAATGTTAAGTACCTTTGGTCTGTTTTTCATGAAA
GGTTTATCCTGTGATTTCTGGAAAAATAATGATTctttaataaattttca
aatttatttagaCACTAGCTTGAATTGGTGGGGTCTGCATTTGAAGTGTA
AATTTAGTTGTGGTAATTACAGTTAAAGATTAAACCCTCACTTAATTAAA
CTTATTTTTTATTGTACAGGATATTCAATCTAAACTACCTTTATCTGAGG
ATTAGAATAGGCGATTGGTACCATATcaatttcctgaaaaataaaCGAGA
AGTCAGCATCATATCAAACTTGTTGATAGAGACATTCGATCGGACACTAG
AAGGACAGTGTGAGTATCtagattaatttttgaaaaaaaatctaatgaaa
tgaTAAGATGGCTCAATTTCAATTATGTTTTAACAAATTGTCAACATTAG
AATAAATGGCAGGACATGAAAAAGTTAAATTATGTCGTGAAAAATTGATC
TTTTGAGCTACTAAGTTTGGTAACAGATTCCTGCCTTACCTTCATTTCCT
TCGATTTTCTTCATGGGGGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043628XLOC_043628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070068-exon-scaffold_513-1491911889:121009..121047TCONS_00070068-exon-scaffold_513-1491911889:121009..121047Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1510915933:121009..121047TCONS_00070068-exon-scaffold_513-1510915933:121009..121047Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1575043694:121009..121047TCONS_00070068-exon-scaffold_513-1575043694:121009..121047Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1491911889:123032..123136TCONS_00070068-exon-scaffold_513-1491911889:123032..123136Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1510915933:123032..123136TCONS_00070068-exon-scaffold_513-1510915933:123032..123136Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1575043694:123032..123136TCONS_00070068-exon-scaffold_513-1575043694:123032..123136Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1491911889:123371..123470TCONS_00070068-exon-scaffold_513-1491911889:123371..123470Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1510915933:123371..123470TCONS_00070068-exon-scaffold_513-1510915933:123371..123470Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1575043694:123371..123470TCONS_00070068-exon-scaffold_513-1575043694:123371..123470Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1491911889:123928..124282TCONS_00070068-exon-scaffold_513-1491911889:123928..124282Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1510915933:123928..124282TCONS_00070068-exon-scaffold_513-1510915933:123928..124282Clytia hemisphaericaexon
TCONS_00070068-exon-scaffold_513-1575043694:123928..124282TCONS_00070068-exon-scaffold_513-1575043694:123928..124282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:121009..124282 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.11158e-06	1.52302e-05	6.7347e-06	1.35643e-05	0.000610482	0.000245535	0.000257737	0.000133433	1.22652	2.64246	2.4219	0.964788	0.864808	0.833602	1.92573	1.47301	1.63491	0.734179	5.75649e-05	1.56	2.91486	2.47765	0.86234	0.804761	2.46256e-05	0	1.72522	1.38448	0	0.797936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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