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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069942 ID=TCONS_00069942|Name=TCONS_00069942|organism=Clytia hemisphaerica|type=transcript|length=2678bp GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT GTCCGATCTCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCCTCATG GTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGATGA GGTAACTGTTGTGACGTTCACCAAGAGTGTCCTTTTGAACGCTTTCGGTT TCTTTAAATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACA GTTTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA TGGTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGA GAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGA TTTCTTTAAATATACGTAATGCGTcttgattttgagataaattctCTAAA CATTGTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACC GAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGT CATGGTAATGAGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTT TTAAAATACAAGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTc catcatttttttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTT CAAAAAGATGAATCAAATCATTCTGTACATCAATCAATTTCataagaaag atattttcaacatctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTA TTTGCCatccatttttttttcttgacttCTGCAATTTCTCATGTCTTCAA TAAAGGTATTTGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACG TAAGTTTTGAGAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTC TAGAAAGCATGTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCA ATAAAGATAATATCTTATTTAGAACAAATACATCATCAACAAATTTGATC AGTAATCCTTTCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAG AAGATCATTAACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCA AAGACAAAGTAGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCT GAAAGAAgttctttttgtcttttatcGAATATGGTTAGGTACATTTCAAC AGTTAGTCCATTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGG GTAGATAGCTGAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTG CGTGCGTCTACATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTT GCTAGAAAATTGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCAC CGCATTGTGAGGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGA ATCAAATCGACCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAA TACTTTACGGGGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAA CAAGATTTGAGATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAG ATCTGATTAATGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGAT GTTGACCAAGCTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAA CATTACGATAGGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTG CCCCCAATCCCACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTG ACGGTAAACTGCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGT GGTTGGCAACTGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATC AGTTTTTTCACTTTAGAACCAGCAATCCATATATTACATATGTCATCAAA TTCAGCCTTGGATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTA GTATGGCATTGAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATC CTATTCCTGATTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCT AGTTACAAAAAAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTC CAGAAGTTGGAAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTT CTCCTCAGTTTATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATAC TTTTGCTGGATCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCT GGTTGTCTAATTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGG TCCTCGTCAGTATGTGACTGTGTACTCA Run BLAST on NCBI transcript from alignment at scaffold_511:593631..597190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069942 ID=TCONS_00069942|Name=TCONS_00069942|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at scaffold_511:593631..597190+ (Clytia hemisphaerica) GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCGATCTCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCCTCATG
GTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGATGA
GGTAACTGTTGTGACGTTCACCAAGAGTGTCCTTTTGAACGCTTTCGGTT
TCTTTAAATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACA
GTTTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA
TGGTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGA
GAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGA
TTTCTTTAAATATACGTAATGCGTcttgattttgagataaattctCTAAA
CATTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTCGAACGGTTTCGATTTCTTCAAATATACGTAATGCGT
CATGGTAATGAGATAAATTCTTTAAACATTGTCCGATCTCATGCTTCGTG
ATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTTAACGGTTTC
GATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTA
AACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACGTTCA
CCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGC
TTCATGATAATGAGATAAATTCATGAAACAGTGTCCAATGGCATGCTTCG
TGGAGAGGTAACGGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTT
TCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTC
TAAACATTGTCCGATCTCATGCTTCGTGGAGAGGTAATGGTTGTGACGTT
CACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTAAT
GCTTCATGATAATGAGATAAATTCTTTAAACAGTGTCCAATGGCATGCTT
CGTGATGAGGTAACTGTTGTGACGTTCGCCGAGAGTGTCCTTTTCAACGG
TTTCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTC
TCTAAACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACG
TTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTA
ATGCTTCATGATAATGAGATAAATTCATTAAACAGTGTCCAATGGCATGC
TTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAAC
GGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGAAAGGT
TATTTAAAGTGTTTGCATAATTATATTTAGTTTTAAAATACAAGTCTTTT
CTCTCATAACCATCTGTATGTGAAAGTTTTTccatcatttttttcaagta
GTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAAAAGATGAATCAAAT
CATTCTGTACATCAATCAATTTCataagaaagatattttcaacatctttt
tcaCAGATGAAAAGAAAATGCTGGTACCAGTATTTGCCatccattttttt
ttcttgacttCTGCAATTTCTCATGTCTTCAATAAAGGTATTTGCTAGCT
CTTGATAGACTGGTTCTTTGACATTTGGAACGTAAGTTTTGAGAAAGGTT
TGAGTTAGTTCGTGACAATTTATTTGGTTTTCTAGAAAGCATGTACCTGT
GTTCGTGGTTTCAATGATTGAGTACTTGGCCAATAAAGATAATATCTTAT
TTAGAACAAATACATCATCAACAAATTTGATCAGTAATCCTTTCCTGATG
ACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGATCATTAACTTTTTG
ACCACCTTCCTGTAATAATCTATTATAGGTCAAAGACAAAGTAGTATAAA
CTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAAGAAgttctttttgt
cttttatcGAATATGGTTAGGTACATTTCAACAGTTAGTCCATTCTTATT
AATAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAGATAGCTGAGAGATT
TTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTGCGTCTACATCGTGG
ATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTAGAAAATTGTTTTAT
CTTGATAACATCGAATCGTTGATCCCATTCACCGCATTGTGAGGTGATGA
GAAAATATGGTGCTTCCTTTTTGGTGTCAGGAATCAAATCGACCAAAGCA
GCCTGATTGATGACATTGTCTAGGACAAACAATACTTTACGGGGTTTATT
CACATCCTGTCTTACTGAGAAGTAATCGTAAACAAGATTTGAGATCTCTT
TCAATGGTTTGGCTGACCCATTTTGATTATAGATCTGATTAATGCCACAT
CGGTTGGCGATCTCGGTGAATGATTTTTCGATGTTGACCAAGCTGTTACA
GTTAATCCAACAAACGATATCCTCGTAATAAACATTACGATAGGATTGCC
AATACTCGCGAGCAGTTTCTGACTTTCCACTGCCCCCAATCCCACTGATG
ACAACAGAGAATTTGAAGTCATCGTGGTGTTGACGGTAAACTGCTTGGTG
AATATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTTGGCAACTGGCGGTA
GACAGGCATAATTGAAAGAAGTCTTGGTCATCAGTTTTTTCACTTTAGAA
CCAGCAATCCATATATTACATATGTCATCAAATTCAGCCTTGGATAGCCC
TAGCTGTAATAAGGGTGGTTCTGCATCACTTAGTATGGCATTGAATTCCG
GTAGACTGACTTTGGTACCACCATGTTGGATCCTATTCCTGATTTTTATC
AAATCTTTCATATTTTCTCCGAAGAACTCTCTAGTTACAAAAAAGAGGAG
TGTACTGTCAAACTGGTCAAGGTAGACCATTCCAGAAGTTGGAAGGAGTA
ATTTGTATTGCTCATCTTTGATGACATTTTTTCTCCTCAGTTTATCGATT
GTAGCTTTATGTGATAGAAAGAATTGAAATACTTTTGCTGGATCTCGTGT
GTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTTGTCTAATTTGCCAA
GGAGAACCTGGCAACGAAACCCTCTTTCTTGGTCCTCGTCAGTATGTGAC
TGTGTACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069942-exon-scaffold_511-1491911889:593631..594331 | TCONS_00069942-exon-scaffold_511-1491911889:593631..594331 | Clytia hemisphaerica | exon |
TCONS_00069942-exon-scaffold_511-1510915933:593631..594331 | TCONS_00069942-exon-scaffold_511-1510915933:593631..594331 | Clytia hemisphaerica | exon |
TCONS_00069942-exon-scaffold_511-1575043694:593631..594331 | TCONS_00069942-exon-scaffold_511-1575043694:593631..594331 | Clytia hemisphaerica | exon |
TCONS_00069942-exon-scaffold_511-1491911889:594584..594611 | TCONS_00069942-exon-scaffold_511-1491911889:594584..594611 | Clytia hemisphaerica | exon |
TCONS_00069942-exon-scaffold_511-1510915933:594584..594611 | TCONS_00069942-exon-scaffold_511-1510915933:594584..594611 | Clytia hemisphaerica | exon |
TCONS_00069942-exon-scaffold_511-1575043694:594584..594611 | TCONS_00069942-exon-scaffold_511-1575043694:594584..594611 | Clytia hemisphaerica | exon |
TCONS_00069942-exon-scaffold_511-1491911889:595242..597190 | TCONS_00069942-exon-scaffold_511-1491911889:595242..597190 | Clytia hemisphaerica | exon |
TCONS_00069942-exon-scaffold_511-1510915933:595242..597190 | TCONS_00069942-exon-scaffold_511-1510915933:595242..597190 | Clytia hemisphaerica | exon |
TCONS_00069942-exon-scaffold_511-1575043694:595242..597190 | TCONS_00069942-exon-scaffold_511-1575043694:595242..597190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_511 | supercontig | scaffold_511:593631..597190 + |
Blast
The following BLAST results are available for this feature:
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