TCONS_00069936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069936
Unique NameTCONS_00069936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4026

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069936 ID=TCONS_00069936|Name=TCONS_00069936|organism=Clytia hemisphaerica|type=transcript|length=4026bp
TACCAGGTGAAACATCTACACCTTCTTCTTTTTGCTTTCGTTTCTGTTCG
TGCTGTTCTTTCATTTCGACAGCTTCACGATAAATCGAATGATGATCACC
AAGCCGTTGCAAAGATATCTCTTCTACTTCAGTCAAGTGATCCATtgctt
cttcaatctttttcataCCAAACAAGCAGTGTGCCAAATTGATTCTGATG
GAGAGAATAATTGGATGTTCTTTATCCAACACCTGTAAGCCATCTTCAAG
TGTTTGTGATAAAGTATCATGGGCTTTATTGGAAAGTCCTTTTTCTGCCA
AACAACGCCCGATAACGCTTGTCGTTTGTAAAACTTCCGGATGGGATTTG
TCGAatgtttcgatctgttttgttTGAGTTGATTCAAGAATTTTCAATGC
ATCATTAAAACGTCCTTTCATTGTCAGAACATGACCGATGTGGAAATCGT
TTCTCAAGTATCGATCGTGATGGTCACCAAAAACTTCTGACAATATCGGT
TTGGATGATTCGAAAATTTGTAACGCTTCGTCGAATGCTTTCATTCTCTT
CAAACATTCTCCGATATAGATTTTGCCAATCAAGTAATCCCTGTGTCTCT
ggcctattgttttattatcaattatttCGATTTCTTTGAAGATACTTAAT
GCGTCCTCGAAATGAGACAGATTCATTAGACATTGTCCGATTTTGTGCTT
TGTGGTGAGGTAATCGTTGTCCTTTCGAACGGTTTCGATTTCTTTAAATA
TACGTAATGCTTCATGGTAGTGGGATAAATTCTCTAAACATTGTCCAATG
GCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTT
TTGAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAG
ATAAATTCTTTAAACATTGTCCGATCTCATGCTTCGTGGAGAGGTAACGG
TTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAA
TATACGTAATGCCTCATGGTAGTGAGATAAATTCATTAAACAGTTTCCAA
TGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCAAGAGTGTCC
TTTTGAACGCTTTCGGTTTCTTTAAATATACGTAATGCGTCATGGTAGTG
AGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGAGAGGTAAC
TGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTA
AATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACAGTTTCC
AATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGAGAGTGT
CCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTcttgattt
tgagataaattctCTAAACATTGTCCAATGGCATGCTTCGTGATGAGGTA
ACTGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTT
CAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATTGT
CCGATCTCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGT
GTCCTTTTTAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGT
AATGAGATAAATTCTTTAAACATTGTCCAATGGCATGCTTCGTGGAGAGG
TAATGGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTC
TTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCATGAAACAGT
GTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACGTTCACCGAGA
GTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATG
ATAATGAGATAAATTCTTTAAACAGTGTCCAATGGCATGCTTCGTGATGA
GGTAACTGTTGTGACGTTCGCCGAGAGTGTCCTTTTCAACGGTTTCGATT
TCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTCTAAACA
TTGTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA
TGGTAATGAGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTTTT
AAAATACAAGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTcca
tcatttttttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCA
AAAAGATGAATCAAATCATTCTGTACATCAATCAATTTCataagaaagat
attttcaacatctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTATT
TGCCatccatttttttttcttgacttCTGCAATTTCTCATGTCTTCAATA
AAGGTATTTGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACGTA
AGTTTTGAGAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTCTA
GAAAGCATGTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCAAT
AAAGATAATATCTTATTTAGAACAAATACATCATCAACAAATTTGATCAG
TAATCCTTTCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAA
GATCATTAACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCAAA
GACAAAGTAGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGA
AAGAAgttctttttgtcttttatcGAATATGGTTAGGTACATTTCAACAG
TTAGTCCATTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGGGT
AGATAGCTGAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCG
TGCGTCTACATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGC
TAGAAAATTGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCACCG
CATTGTGAGGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGAAT
CAAATCGACCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAATA
CTTTACGGGGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAACA
AGATTTGAGATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAGAT
CTGATTAATGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGATGT
TGACCAAGCTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAACA
TTACGATAGGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTGCC
CCCAATCCCACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTGAC
GGTAAACTGCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGTGG
TTGGCAACTGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATCAG
TTTTTTCACTTTAGAACCAGCAATCCATATATTACATATGTCATCAAATT
CAGCCTTGGATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTAGT
ATGGCATTGAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATCCT
ATTCCTGATTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCTAG
TTACAAAAAAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTCCA
GAAGTTGGAAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTTCT
CCTCAGTTTATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATACTT
TTGCTGGATCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGG
TTGTCTAATTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGGTC
CTCGTCAGTATGTGACTGTGTACTCA
Run BLAST on NCBI

transcript from alignment at scaffold_511:592913..597190+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069936 ID=TCONS_00069936|Name=TCONS_00069936|organism=Clytia hemisphaerica|type=transcript|length=4278bp|location=Sequence derived from alignment at scaffold_511:592913..597190+ (Clytia hemisphaerica)
TACCAGGTGAAACATCTACACCTTCTTCTTTTTGCTTTCGTTTCTGTTCG
TGCTGTTCTTTCATTTCGACAGCTTCACGATAAATCGAATGATGATCACC
AAGCCGTTGCAAAGATATCTCTTCTACTTCAGTCAAGTGATCCATtgctt
cttcaatctttttcataCCAAACAAGCAGTGTGCCAAATTGATTCTGATG
GAGAGAATAATTGGATGTTCTTTATCCAACACCTGTAAGCCATCTTCAAG
TGTTTGTGATAAAGTATCATGGGCTTTATTGGAAAGTCCTTTTTCTGCCA
AACAACGCCCGATAACGCTTGTCGTTTGTAAAACTTCCGGATGGGATTTG
TCGAatgtttcgatctgttttgttTGAGTTGATTCAAGAATTTTCAATGC
ATCATTAAAACGTCCTTTCATTGTCAGAACATGACCGATGTGGAAATCGT
TTCTCAAGTATCGATCGTGATGGTCACCAAAAACTTCTGACAATATCGGT
TTGGATGATTCGAAAATTTGTAACGCTTCGTCGAATGCTTTCATTCTCTT
CAAACATTCTCCGATATAGATTTTGCCAATCAAGTAATCCCTGTGTCTCT
ggcctattgttttattatcaattatttCGATTTCTTTGAAGATACTTAAT
GCGTCCTCGAAATGAGACAGATTCATTAGACATTGTCCGATTTTGTGCTT
TGTGGTGAGGTAATCGTTGTCCTTTCGAACGGTTTCGATTTCTTTAAATA
TACGTAATGCTTCATGGTAGTGGGATAAATTCTCTAAACATTGTCCAATG
GCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTT
TTGAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAG
ATAAATTCTTTAAACATTGTCCGATCTCATGCTTCGTGGAGAGGTAACGG
TTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAA
TATACGTAATGCCTCATGGTAGTGAGATAAATTCATTAAACAGTTTCCAA
TGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCAAGAGTGTCC
TTTTGAACGCTTTCGGTTTCTTTAAATATACGTAATGCGTCATGGTAGTG
AGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGAGAGGTAAC
TGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTA
AATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACAGTTTCC
AATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGAGAGTGT
CCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTcttgattt
tgagataaattctCTAAACATTGTCCAATGGCATGCTTCGTGATGAGGTA
ACTGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTT
CAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATTGT
CCGATCTCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGT
GTCCTTTTTAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGT
AATGAGATAAATTCTTTAAACATTGTCCAATGGCATGCTTCGTGGAGAGG
TAATGGTTGTGACGTTCACCGAGAGTGTCCTTTCGAACGGTTTCGATTTC
TTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCATGAAACAGT
GTCCAATGGCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATG
ATAATGAGATAAATTCTCTAAACATTGTCCGATCTCATGCTTCGTGGAGA
GGTAATGGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATT
TCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTTTAAACA
GTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCGCCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCA
TGATAATGAGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGGA
GAGGTAATGGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGA
TTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCATTAAA
CAGTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGT
CATGGTAATGAGAAAGGTTATTTAAAGTGTTTGCATAATTATATTTAGTT
TTAAAATACAAGTCTTTTCTCTCATAACCATCTGTATGTGAAAGTTTTTc
catcatttttttcaagtaGTTGGAAAGTCTTCTCATATGTCCTTGTGTTT
CAAAAAGATGAATCAAATCATTCTGTACATCAATCAATTTCataagaaag
atattttcaacatctttttcaCAGATGAAAAGAAAATGCTGGTACCAGTA
TTTGCCatccatttttttttcttgacttCTGCAATTTCTCATGTCTTCAA
TAAAGGTATTTGCTAGCTCTTGATAGACTGGTTCTTTGACATTTGGAACG
TAAGTTTTGAGAAAGGTTTGAGTTAGTTCGTGACAATTTATTTGGTTTTC
TAGAAAGCATGTACCTGTGTTCGTGGTTTCAATGATTGAGTACTTGGCCA
ATAAAGATAATATCTTATTTAGAACAAATACATCATCAACAAATTTGATC
AGTAATCCTTTCCTGATGACTTTTCCATCCAAGTAGGAGATTTTGTTTAG
AAGATCATTAACTTTTTGACCACCTTCCTGTAATAATCTATTATAGGTCA
AAGACAAAGTAGTATAAACTGAAGGGTTTCCGATTTCTTGGGTTCCCTCT
GAAAGAAgttctttttgtcttttatcGAATATGGTTAGGTACATTTCAAC
AGTTAGTCCATTCTTATTAATAAATGAAAACGCCTGCTGTAGAGCAAGGG
GTAGATAGCTGAGAGATTTTAGAAGTTTTTGGTTTGCTTCTTTATCTTTG
CGTGCGTCTACATCGTGGATATTTCTCTCTAAGAACTGTTCAGCCTCTTT
GCTAGAAAATTGTTTTATCTTGATAACATCGAATCGTTGATCCCATTCAC
CGCATTGTGAGGTGATGAGAAAATATGGTGCTTCCTTTTTGGTGTCAGGA
ATCAAATCGACCAAAGCAGCCTGATTGATGACATTGTCTAGGACAAACAA
TACTTTACGGGGTTTATTCACATCCTGTCTTACTGAGAAGTAATCGTAAA
CAAGATTTGAGATCTCTTTCAATGGTTTGGCTGACCCATTTTGATTATAG
ATCTGATTAATGCCACATCGGTTGGCGATCTCGGTGAATGATTTTTCGAT
GTTGACCAAGCTGTTACAGTTAATCCAACAAACGATATCCTCGTAATAAA
CATTACGATAGGATTGCCAATACTCGCGAGCAGTTTCTGACTTTCCACTG
CCCCCAATCCCACTGATGACAACAGAGAATTTGAAGTCATCGTGGTGTTG
ACGGTAAACTGCTTGGTGAATATTGCTGATCAGGTTTGCTCTTCTGAAGT
GGTTGGCAACTGGCGGTAGACAGGCATAATTGAAAGAAGTCTTGGTCATC
AGTTTTTTCACTTTAGAACCAGCAATCCATATATTACATATGTCATCAAA
TTCAGCCTTGGATAGCCCTAGCTGTAATAAGGGTGGTTCTGCATCACTTA
GTATGGCATTGAATTCCGGTAGACTGACTTTGGTACCACCATGTTGGATC
CTATTCCTGATTTTTATCAAATCTTTCATATTTTCTCCGAAGAACTCTCT
AGTTACAAAAAAGAGGAGTGTACTGTCAAACTGGTCAAGGTAGACCATTC
CAGAAGTTGGAAGGAGTAATTTGTATTGCTCATCTTTGATGACATTTTTT
CTCCTCAGTTTATCGATTGTAGCTTTATGTGATAGAAAGAATTGAAATAC
TTTTGCTGGATCTCGTGTGTTCAGTTTTTTGTGTATTCTCTCTCGCAGCT
GGTTGTCTAATTTGCCAAGGAGAACCTGGCAACGAAACCCTCTTTCTTGG
TCCTCGTCAGTATGTGACTGTGTACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043539XLOC_043539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069936-exon-scaffold_511-1491911889:592913..594737TCONS_00069936-exon-scaffold_511-1491911889:592913..594737Clytia hemisphaericaexon
TCONS_00069936-exon-scaffold_511-1510915933:592913..594737TCONS_00069936-exon-scaffold_511-1510915933:592913..594737Clytia hemisphaericaexon
TCONS_00069936-exon-scaffold_511-1575043694:592913..594737TCONS_00069936-exon-scaffold_511-1575043694:592913..594737Clytia hemisphaericaexon
TCONS_00069936-exon-scaffold_511-1491911889:594864..595115TCONS_00069936-exon-scaffold_511-1491911889:594864..595115Clytia hemisphaericaexon
TCONS_00069936-exon-scaffold_511-1510915933:594864..595115TCONS_00069936-exon-scaffold_511-1510915933:594864..595115Clytia hemisphaericaexon
TCONS_00069936-exon-scaffold_511-1575043694:594864..595115TCONS_00069936-exon-scaffold_511-1575043694:594864..595115Clytia hemisphaericaexon
TCONS_00069936-exon-scaffold_511-1491911889:595242..597190TCONS_00069936-exon-scaffold_511-1491911889:595242..597190Clytia hemisphaericaexon
TCONS_00069936-exon-scaffold_511-1510915933:595242..597190TCONS_00069936-exon-scaffold_511-1510915933:595242..597190Clytia hemisphaericaexon
TCONS_00069936-exon-scaffold_511-1575043694:595242..597190TCONS_00069936-exon-scaffold_511-1575043694:595242..597190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:592913..597190 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.585572	0.42509	0.107436	1.04593e-05	8.7435	8.94367	9.08938	8.64076	2.96327	3.88843	6.78578	3.32804	2.62233	3.44346	1.48381	2.67774	2.19522	2.39906	2.20031	1.87835	0.99912	2.17154	0.644163	2.31399	9.37592	9.26281	0.558727	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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