TCONS_00069902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069902
Unique NameTCONS_00069902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069902 ID=TCONS_00069902|Name=TCONS_00069902|organism=Clytia hemisphaerica|type=transcript|length=1980bp
CACTCTCAGacataattgaaaaaaaacattggaCAAAAATCCATTTAAAC
CTGCTGTTCTTGTAGTACAAACTCACAGTTTGctttgaaaatacatttta
atAGAGAGTCCTCGACATCAGGTTCATAAGACATTCAAAAGAGGTCCAGG
TAGTATAGCTCCCTGATGTGATGGCAGTGACCTCCTAAACACCGACCTCG
ATCACTAAGGGAACTATATACATTTTCTTGTTATAATTTCGATACTaaat
aagtttttcttttgatatcgTTATTTTTTCTCTTCAACATGTGAATATTT
GTACAAAATCTTTCTGGAAGAAAATGATGAATGTATGACAATGTGTTTGA
GGTGAAATCAAGAGcttcaatttcaacaatctgGACCAAGGAATAAAATC
TGGAATATGGATGGATCAGAAATCTCAAGTGACGAACCAAAGAAAAATGG
ATTTCGTTACATTTGTGAACCAGTCTTATTTCTCTACTCATTCGCATACA
TGTTGCAATTCCCAACAGCACATCAGTATATTTACAGTCGGTTCAGCGAG
AACATAGGCTTCAAATATTCCTATAATAATCCACATGCTGGGATATCGAG
AGAATGTCACCATGGCTCGATGAACCAGACTGATATACACGCTCAACAAA
AGGTGCAATCAGCGACGGCTCATTTCCAAATCTACTATCACATTATGAGT
ATCATACCATCAACCATCATGAACCTTTTCTACGGCGCTCTCTCCGACGA
AGTTGGACGTCGCTGCATGATGACGGTAGTTCTCATCTGTTCTGTCATCG
AATCGTCTATTCTTTTAGTCAACATCGTGTTTAAGCTACCATTATGGACG
ATCTTTATTGGGAACGCATGTGCAGGTTTCGGAGGTGGACTGAATGGAAT
GTTTATGTTGATCATTGCTTACACTGCCGACGTTACTGAGAAAATGGACA
GGTCTGTCCGAATTGGTTACATAGAGGCTGCATTATTCCTTGGTATGACA
ATAAGTAATTACGCCAGTGGAGAATTGATTCACCAATATGGTTTCACTAT
ACCACAAGTTGTCACTGTTCTTTCGCATCTGTCCGCCATCTTGTATGTCG
CCTTTGTCCTCAAGaaatcacgtgatcaaaacaaaCCGAGAAACGAGACG
AACAAATTGCTTATCTTTTGGCAACAACCGATTAACATGTGGAACATTTT
AGTTAAAGAACGTGCAAACAAGGACTTGTTATATCTagccatctttattt
tgatcAGTGGCCTAACTTTCACTGTTAGTGTTCATTCCGTGTTCACACTG
TATTTGTTAAATCGTCCATTTTGTTGGCTGGCCAGAGACGTTGGTTACAT
CATGGGAACCTATTTTCTTCTCCTTTCCTTGGGAACAGCTATTGGAATGA
AGATTTTAACACCAACCATACCTGAATGGCTTTTATCTCTGCTCAGTTTC
ATGATGTCGGCTGGAAGCTTTCTTTATATCGCATTTGCAACCAATAAATT
GGATTTATATGCAGCAATTGCGCTACGATTTTTCGGTGGTTTACCGACAG
CCATCTTTCGTGGAAATGTTTCGAAGAGTGTCCCTCAAAACGAGCATGGA
GCCATCTTTTCGGTCATCACATCCATAGAAATGCTACTCATCATGTtggg
aattttcattttcaatacaTCATACGCACATTTGAATGATATTGGACATC
CCGGATGGTTTTTCCTTATACCGGCCATAATGCTTATTATACCGTTTACT
TTATCTGTGGTTTATTGGaagaaaacgttcgatttgcaaaggaaacattt
ttatgacgtcactaTTAGTGAAGAAGACgaggaagaagaaaaagaacaac
ttttgaaagaataaacTCTGTGGAGAAGTGTTGAAAATGCTTTATCCTTA
TATGTTACTGTTTCTGTTAGAAATATCACCCCTTCGCGGTGTCCTTAAAT
GAGCTTATATTTTGAAGGGCTGGCCCTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_511:328660..340051+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069902 ID=TCONS_00069902|Name=TCONS_00069902|organism=Clytia hemisphaerica|type=transcript|length=11392bp|location=Sequence derived from alignment at scaffold_511:328660..340051+ (Clytia hemisphaerica)
CACTCTCAGacataattgaaaaaaaacattggaCAAAAATCCATTTAAAC
CTGCTGTTCTTGTAGTACAAACTCACAGTTTGctttgaaaatacatttta
atAGAGAGTCCTCGACATCAGGTTCATAAGACATTCAAAAGAGGTCCAGG
TAGTATAGCTCCCTGATGTGATGGCAGTGACCTCCTAAACACCGACCTCG
ATCACTAAGGGAACTATATACATTTTCTTGTTATAATTTCGATACTaaat
aagtttttcttttgatatcgTTATTTTTTCTCTTCAACATGTGAATATTT
GTACAAAATCTTTCTGGTAAGTCAAATCTAACAAAGACTTGTTAAACATT
TTCTCTTGAAATTGTTCCATatcagtttttatttctttgaagattttgtt
caaacacacgaaaaataaatttttcatctttaatttcattttgatgGGTG
TTTGGTTAAGTAACATCTAAAATTCATTAATTTGCGTTTCAGGAAGAAAA
TGATGAATGTATGACAATGTGTTTGAGGTGAAATCAAGAGcttcaatttc
aacaatctgGACCAAGGTATAAACGGAATcctaaaacacccctgtctctg
tgctTCAGTCAGGGGGGTCGGTATACTTAAATTCTCAAACATACATGAAT
ACTAAAAGGATACTACCACTACcccatttttgaaaagtggtattTTATTT
AGTACCCATGTACTGAAATGTTTAGGGACATTTCGAGACAGAGAACACCC
AATCTTGGTCTTTTCAGGACAACTTTTGTCTTCTCGGGACCGTTTTTCTC
AAGAGTTCTGATCTTACCAGTATTGCAAAAAATCACGAACAGCTCAGAAA
AAGAGTGAGTTAAAAAATCTCACATTTTAGTTTGGATTCCgccttttttg
gtattttagtaccccattttactaaaaggatttttaagtTTCTGGGTATA
CAACCACGTCACTAAACTAAATCTAGGATAGATTTAAGTACCGACCTCCC
CCTGCTATAGTGGTTATCGATAGCCTAGAGGGTTGGATTAAAAAGAAGAG
ATTCTATTTTAGCGACCCTCTAAAAATTCTACTTCGTTTTAGagttaccg
tattacttcgaataaataTATTATTTAAGGAGGGGTTTTTATTCtagggg
ggcgtttattaagtGATTTATAACCAAGGTCACTTTAATAAAGTGAATGG
GAACCCGTTTTGCCTTCGGATTATTGTTtgagcatagtataagaaagccc
cGGCTGTCTTCGAgttctataagaacatcaatTTTGCTAGTTTATTCTTG
GTTGGTAGttttgtgaatttttctctCATTTCCTTCAGAACAAGTTTTTG
AATTTAGATACCTTTGAATATTGGCCCAATAAATCACTATGAACTATTTT
TGGAGATATATCATATTANgcatagtataagaaagccgcggctgtcTTCG
AgttctataagaacatcaatTTTGCTAGTTTATTCTTGGTTGGTAGtttt
gtgaatttttctcttatttcctTCAGAACAAGTTTTTGAATTTAGATACC
TTTGAATCTGGGCCCAATAAATCACTATGAACTATTTTTGGAGATATATT
ACTATTAGGGGTATTTTGAGGAAATAATACTTTTTAgccaaaattcaaat
tataaaaactaaattcaaaatgagaactttcctgtcagtttaaatgatTA
ATTTGGAAATTGccagcttgaaattttcacagtattgtctttgatgtact
ttttcattggtttctcaaaatatttcattaaaatattgtgaaggcattcg
aggcacttgattacttttttagtttttcagcCCAACCATTTTGTGCTTGT
GCTTATATTACTTATTGTTGATATTTCATTTATAATGATTATATGATACA
AGTGTATTTTCACAAAGGCATACCATTACTTTCTAAAACGCAGTGAGAAA
TAGTTATTAACGATAAATCAATAAAACTTACCACAacaattcagatgtta
tcattccagccgtgGCTTTATACAATACtcttatactatggtttgaGTAT
AAATAGCTCAACTTAGAGATCAAAATTACTAAAAGAATACATATTATTAT
CATATATCTAAGTTTTCCTTCATATCATACTTCCTTACAGCTACTTGTTT
CAAATCACATTCCCTCCTAAGGGGAGGCGTTTATtagaaggggcgtttat
tataAATCTTTTCTCAAAGGAGGGGCATTTAAAagaaaggggcgtttatt
cgaggtaATACTGGAGTCAGTTCCTCAAAGATTTTAGTGAGGTAAAAATT
TGATGTTAGATGGATCACAAAGTATATTCCTCTATAAAAGGTCTAAAATT
TAGGAATAATCTTACATCCTTAATTGAAATATCCCTCAAAACAGTACCTT
GCTTTTCTTTTTAGGAATAAAATCTGGAATATGGATGGATCAGAAATCTC
AAGTGACGAACCAAAGAAAAATGGATTTCGTTACATTTGTGAACCAGTCT
TATTTCTCTACTCATTCGCATACATGTTGCAATTCCCAACAGCACATCAG
TATATTTACAGTCGGTTCAGCGAGAACATAGGCTTCAAATATTCCTATAA
TAATCCACATGCTGGGATATCGAGAGAATGTCACCATGGCTCGATGAACC
AGACTGATATACACGCTCAACAAAAGGTtcgttacatgttttttttttta
taagcatatgttttTTGGGAAACAAGCTCAATTATGCTTAGAGATATTTT
AGACTCAGACTCGAAGTATGTTtatcatatgcttatttttccgaaaaatt
cgagtctccaatttttccaaaatctgtcgTTGCTATACATGAGGATAGGG
AAATAGGTAATGACACAAAGATTTTTCAGGAAAGTTGTGAACGATTGCCG
CGTTTATAATTTTCACTTACACGCCTCAAAAGCAAGCTCAgtaatatgct
tgtaatatgcttattttttagacaaattcaggtgtcggtatgcttataaa
cgtaatgcttataaaaaaacatgtattatcTTTCACGAATCACTTTAGCC
ATCTCACGTAATTTCGCAagatttatttttgtgaaaaaggcaATAGTTTG
CGAAACCGGGAAATGTGAAATTAATCtgaactagccggtacccgacATTG
CACACCGGTTAAGCtttagctgaacgcactaaaagtccctTGGATTTGAA
AACACGTAAAGCAAAGGAAAAGAGAAAAACGAAGTGGCGGGCAAGCCAAG
GCAAAAATTAAATTGCTAAATGTACGGGCctttaatttcaaaagaaaGGC
TGAATGAAGTCTGAAGGAAGTCTGAACCAGGCTCTATGAATCACAACAAA
GCTTAGAACACATTGGTGGGGCAAGCTTAAAACTGCTTGTAAGAAACGAA
AGTTACACGcagaaaacaaaatgacatatAGACTACCGCTATATAGATAA
GGTatgatcactgacctttatataccctggaccaagcttctcaatcccag
ccaagcaaaatcctTGATCGGAGTTTtgtgaaaattggtaccctaatgtc
ggcactactcgatagcggtgtaattgcatcgagagcgctaggtctacttt
tcctcaaattcttttgatgatgtagcggcgttagacgttaatttttaaca
ttgcaatggcttctccttgggtaccaattctaaaaaaactccaatcaaag
atggcagatattgTTTGGTCCAGGGTTATATAAAGGTCAGTGGGTATGAT
CTGTCTTCACACAATCAATTTGGCCTCACAGCAAGGTATTCATCAATGGC
CTTGTGTGACGAGGagtcaataaaaaatgaacATCACACTGATAAATGTT
CTCGCTAGTAAAcaatcacaggaaaaaattttcgttttcttagttggaaa
aaagataaaatccaatggaaaatccaacctgaaaatgtgggacattctcc
aaggttggaaattttgcattttccatggcttggaattttcgtaaatccag
gttgaaaaaagcaaaattaacaaggttgcaattttttaaaattcagttgg
aaaaaagccaaaatccaagcttaaacaaggttggaattctcgaaaatcga
ggttgaaaaaaaacaaaatccaaatttaacaaggttggaattttcaaaaa
tctaggttgaaaaaagccaaaatacaACGtggttggaaatttcgaaaatc
caggTGGAAGAAAGCCGAaatacaaggttggaatttttgtaaattcagtt
ggaaaaaagccaaaatccaagctaaacaaggttgaaaaaagccaaaatcc
aaaaagtcatggcagagatgtggaaaataGATCTTAAAcaagatttttgt
ttttgtgaacagtcactcgctagcctaggctcgatggctcccggtcaata
tctcgttattgttcgcacagatacgtggttgatcttagatcactcacaca
gctcagcagggtactatttgaaactatgacacaagtaccctaagtgcttc
actgtgcgaacgcactgcgattgaccgaggccgctccgaagagaagcctc
acctgacggaaacttacagcttgactgctcacattgtagcctaatatcta
ggttagctatacatcaaaacagttttgagcgaaaaatcgctagtggtttt
cccaaggacatgcgcagaaaatggttggaaaaacgtaatttccacatgaa
tttttaacgttttccaaactgtttggaaaaacacaaatttccaacccaaa
aagtctagttttccaatcgaaagagtttcaatttcacaaaaatgtaattt
ccacatggatttttaacgttttccaaactgtttggagaaacacaaatttc
caacccaaaaagtctagttttccaatcgaaagagtttcaatttcacaaaa
atgtaatttccacatggatttttaacgttttccaaactgtttggagaaac
acaaatttccaacccaaaaagtctagttttccaagaaagggtttcaatct
tagaaaaatgtaatttccacatggattttgaacgttttccaaactgtttg
ggagaaacacaaatttccgacccaaaaagtctagtttttcaacttgaggt
atcaaatttactaaaatatgtattttcacatcgatttNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCGGATAAAAACG
CACGTATTAATCTTGACCCTCTCATGTACTAGAACAAGTTTACTCGAATT
ACTcacaattttctttaaaaatgaaaaatcccaaaatttaGGTGAAAAAT
TACCCAAATTTAATTGTTCGAGTTTAAGTAGCTCGATTATAAAAATCTAA
ATTGTCTCTTCTACAGGTGCAATCAGCGACGGCTCATTTCCAAATCTACT
ATCACATTATGAGTATCATACCATCAACCATCATGAACCTTTTCTACGGC
GCTCTCTCCGACGAAGTTGGACGTCGCTGCATGATGACGGTAGTTCTCAT
CTGTTCTGTCATCGAATCGTCTATTCTTTTAGTCAACATCGTGTTTAAGC
TACCATTATGGACGATCTTTATTGGGAACGCATGTGCAGGTTTCGGAGGT
GGACTGAATGGAATGTTTATGTTGATCATTGCTTACACTGCCGACGTTAC
TGAGAAAATGGACAGGTCTGTCCGAATTGGTAAGCTTGTTAATCTAGTCT
GTCTTCACACACCTGTTATTAGCTTATAAATATATACCGGTATGGTCTAG
TCTGGCATGCTAGGTCACTAAATTATGAGTGAGAGGAAGGTTAAGTAAAG
GAGATCTTGAGGACACTCTTGTAGTTAATGTAAACCAATATTATCACATA
ACAGTTAtggtattatcatataacacctataTTACTGTATAAGACGTACT
ATAAATAACTCCACTCTATAAATCACCAAGCATTCGAGGCCCAGATTCTG
TGCCAATGTATTACTTTCTTCTACTTTCTGAGCAAATTCATTCTGTTATG
AATGGTGGTATCGAAAATAGATTGACACCCTTCATTTTGAGGCCGGCGGC
ATTAAGTTAGATTCATGTATTTTAACCAACTGCTAAAAAGGATTTGCAAA
TGGAATGAAATGTATTGTTATTTCAGGTTACATAGAGGCTGCATTATTCC
TTGGTATGACAATAAGTAATTACGCCAGTGGAGAATTGATTCACCAATAT
GGTTTCACTATACCACAAGTTGTCACTGTTCTTTCGCATCTGTCCGCCAT
CTTGTATGTCGCCTTTGTCCTCAAGaaatcacgtgatcaaaacaaaCCGA
GAAACGAGACGAACAAATTGCTTATCTTTTGGCAACAACCGATTAACATG
TGGAACATTTTAGTTAAAGAACGTGCAAACAAGGACTTGTTATATCTagc
catctttattttgatcAGTGGCCTAACTTTCACTGTTAGTGTTCATTCCG
TGTTCACACTGTATTTGTTAAATCGTCCATTTTGTTGGCTGGCCAGAGAC
GTTGGTTACATCATGGGAACCTATTTTCTTCTCCTTTCCTTGGGAACAGC
TATTGGAATGAAGATTTTAACACCAACCATACCTGAATGGCTTTTATCTC
TGCTCAGTTTCATGATGTCGGCTGGAAGCTTTCTTTATATCGCATTTGCA
ACCAATAAATTGGATTTATATGCAGGTGAGATATTGTTTTgctttgtttc
ttcttcttccaatTATACTCAGTTAATCTGTGGTTACTGCCTTTCATATT
AAGGTGTCTTATGTATTCAGTATATGGTTCCATACCTTCCAATTAAAGGG
TTCTTTCAATCTCAAATGTTGAAGCATCCTccattttaaaaacctttact
aTTCCGTCAGCGCAATAAGATAGCCTTCGTTTCGCTAATTTGATTTCGAT
CTAGGAGTCTTGAAAGGAGGCTTCAAGTTCCCAAGAAGAGCACTTGTCCG
ACCAGGATCAAATACTCTGTTAACAATTTTCCCTTCCTTTTGACAGCAAT
TGCGCTACGATTTTTCGGTGGTTTACCGACAGCCATCTTTCGTGGAAATG
TTTCGAAGAGTGTCCCTCAAAACGAGCATGGTCAGTATAATAAGATGAGC
TCCATCCTGAAATTGCTTTTCCAACTATTTCCTGGCTATTGTTTacaatg
aaaataattaaacaataattggctttaaattctACAACATAATTTCTCCG
CAGTGGGTTTAAACGGCGATAAGAATACCTAATCGCTGCATAATGAATTT
ATGGTAGATCTTTACTTAATATTAAAATTCTATATTCTTTCCCGATTTTC
CAGGAGCCATCTTTTCGGTCATCACATCCATAGAAATGCTACTCATCATG
TtgggaattttcattttcaatacaTCATACGCACATTTGAATGATATTGG
ACATCCCGGATGGTTTTTCCTTATACCGGCCATAATGCTTATTATACCGT
TTACTTTATCTGTGTAAGTTActtgtgtttttataaaaccAGCACCCTTT
GGATGAGGCttagttgtttttattttttcctgatttttagaCTTTCATAT
TCTTTTAAAATGCTCTTTATATGCTTAAGTACTTTATAGGGCTTATAATC
AAGATTGATGAAATCTGTTCTTAGGTCTGGGTTAAAATTGAGCCTTAATC
AATCCTCTTAATCAATCTAAAATCAGACGTGAACTTGATCTGTTTTGTAG
GGTTTATTGGAAGAAAACGTTCGATTTACAAAggaaacatttttatgacg
tcactaTTAGTGAAGAAGACgaggaagaagaaaaagaacaacttttgaaa
gaataaacTCTGTGGAGAAGTGTTGAAAATGCTTTATCCTTATATGTTAC
TGTTTCTGTTAGAAATATCACCCCTTCGCGGTGTCCTTAAATGAGCTTAT
ATTTTGAAGGGCTGGCCCTTCATgcccctaaaattgaaattattagttgg
cttaaaaatagtttttattttatttatggaaaattgttattttatctttt
gtattttaaaattgtACATGAAAAATTCAGGGGGTAGTAAAAATCGTGGA
GAAAATGTGCATCTTATAACAGCCAAGAATATCACCTTCACCGGCAGTTG
TTGAATCGGCATTCATGAcatgttttaataaaaatttcccaaaatgccGT
TTTTTTGTCAAACGAATGAAGAGGTAGTGGTATTCCTGGCAAATCTCGCA
ATTCTGTCTGTCAATCGAAAGGGCTgtaagattttattttatttatttat
tctttatttaaagtTGGGTACTAAAAATCTAGATTTTACAAATGAATATA
AAGTCTAATTAAATCCAACTTAGTAAAAAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTAAAGTTTAAAAACACATTTAAAAGTAGAGTCAACC
ATATTTCTAAATGCAACCTTTACAGGTGCATATAGGAGAAACAGATTTCA
GAGCAGCCTTAAAAGATGTTAGTGAATCTAGGTTCTTAATATTGGATGGT
AATTTGTTCCAGGTAGAGACTGCTCTGAAATCGAAAGTATTTACAGCAAA
AACACTGTcatatttttcatataattGTAAAGCTAACGTATGACCAGAAC
GGAGGGTATAAGCAGATTGTCCTGTATTGAAAATATCATGCATAATGCTA
GGTCCGATGTGCTGGATCAACGATgtaaaataatagataaccaacttgcc
ttgattctcaaaaaacatccatgttacggttgtaaaaatattaatgacat
tttgcatcgtaaaaagtgcaattaaataaaaacttgcttcatttgcatcC
TTCTATTGgccagaatcgatcacgtgatgtatatttttccaaaatttggg
ttagaaaaagtgtattttcctataggcagcctcacagaaggaatttttta
attNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttttaatta
gatattattgttctataaacattcatctgtttattttgtatcaggcaacc
ttcatgcacttttcattcgtgagatatcgcacttcaaatcacacacATAT
TTTTCAGACAACATCATTTTATGatcgtttatttatccagatgaagatta
agtggtatcaggccgatccgtagtcaatttgtctaaagattggtaccttt
atcttttgaaaaaaattccaaaatttgcagtaNCGGCAAAAGATTTAAGT
GATATTTCGACAATCAAACAACTGACTGTGGATGGTGGGGCGAACGGGAA
TTTTTTACTTCTTCTCGGATTGGCAAAAATCTGGACCGAATGGGAAGGTC
TTTCTGATTAGGTTTCATGACTTTTCTCACTATACTATTAAGCGCTTCCC
AATCGGGTTCAAACTTCCCGTAACACCAGTTTCAAGAGAGATTTGATGAT
TATTAAGAAAGATTGCCACAGTAAAACCTTCAAATTCTTTACCGCCTAGA
GAAAGTCGTCATCGTACAACTTTGTATGAGTTTCAGTCATTTTTCGACTT
CCTGATTAGGAAAAATCTTCCCAAAGGGGCAGAAAAAATCGAGATGGTGC
GAGCAGTTTCCTcccaatagaccttatcggagtttctgatttttctaaaa
aagcgatgcattgcgggattgtttcgagtgtattacatagaattccctcg
aggaattcctaagagatttctattgtaatacactcgaaacaatcccacaa
tgcatcgcttttttagaaaaatcaaaaactccggtAAGGTCTATTCGGAA
GAATCTTTTCGATCAAGTTAGTGCGTAGTGGGCATAAAAGGCTTTATagc
caatttttaatttttcatcattttagtTATCGAGTGCATTGATCTTAAAT
TTGCATTTTAGCTCAGCATGCCCGATCCAATATAAAGTGTAAGTTTTAAT
CCACATCCCTGTTACATCCTGCCAGGAAGGTGAAATAAGCTTTGAAATTA
CAATTTTAATTAAAGTATACAGACCTACTTTAAttaaaattgtaatttta
aAGCTTGTCACCTCCCTGACAGGGTGTAACAGGGCTGTGGATTAAAACTT
ATTGAGAAATTCCAATCAGCACCCTTTGAATAAGGCTCGGCTGTTTTTAT
TCTTCCTGATGTCTAGACTTtcatattctttgaaaattctctTTATATGG
CTTTAAAGGGGCTTAAAATCAAGATGATTGAAATCTGTTCTTAGGTCTTG
GTTAAAATTGAGCCTTAATCAAGCCTCTTAATCAATCTAAAATCAGACCT
GAACTTGATCTGTTTTGTAGGGTTTATTGGaagaaaacgttcgatttgca
aaggaaacatttttatgacgtcactaTTAGTGAAGAAGACgaggaagaag
aaaaagaacaacttttgaaagaataaacTCTGTGGAGAAGTGTTGAAAAT
GCTTTATCCTTATATGTTACTGTTTCTGTTAGAAATATCACCCCTTCGCG
GTGTCCTTAAATGAGCTTATATTTTGAAGGGCTGGCCCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043531XLOC_043531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069902-exon-scaffold_511-1491911889:328660..328975TCONS_00069902-exon-scaffold_511-1491911889:328660..328975Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1510915933:328660..328975TCONS_00069902-exon-scaffold_511-1510915933:328660..328975Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1575043694:328660..328975TCONS_00069902-exon-scaffold_511-1575043694:328660..328975Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1491911889:329152..329225TCONS_00069902-exon-scaffold_511-1491911889:329152..329225Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1510915933:329152..329225TCONS_00069902-exon-scaffold_511-1510915933:329152..329225Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1575043694:329152..329225TCONS_00069902-exon-scaffold_511-1575043694:329152..329225Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1491911889:331074..331335TCONS_00069902-exon-scaffold_511-1491911889:331074..331335Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1510915933:331074..331335TCONS_00069902-exon-scaffold_511-1510915933:331074..331335Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1575043694:331074..331335TCONS_00069902-exon-scaffold_511-1575043694:331074..331335Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1491911889:334676..334988TCONS_00069902-exon-scaffold_511-1491911889:334676..334988Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1510915933:334676..334988TCONS_00069902-exon-scaffold_511-1510915933:334676..334988Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1575043694:334676..334988TCONS_00069902-exon-scaffold_511-1575043694:334676..334988Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1491911889:335436..335984TCONS_00069902-exon-scaffold_511-1491911889:335436..335984Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1510915933:335436..335984TCONS_00069902-exon-scaffold_511-1510915933:335436..335984Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1575043694:335436..335984TCONS_00069902-exon-scaffold_511-1575043694:335436..335984Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1491911889:336306..336389TCONS_00069902-exon-scaffold_511-1491911889:336306..336389Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1510915933:336306..336389TCONS_00069902-exon-scaffold_511-1510915933:336306..336389Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1575043694:336306..336389TCONS_00069902-exon-scaffold_511-1575043694:336306..336389Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1491911889:336613..336772TCONS_00069902-exon-scaffold_511-1491911889:336613..336772Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1510915933:336613..336772TCONS_00069902-exon-scaffold_511-1510915933:336613..336772Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1575043694:336613..336772TCONS_00069902-exon-scaffold_511-1575043694:336613..336772Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1491911889:339830..340051TCONS_00069902-exon-scaffold_511-1491911889:339830..340051Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1510915933:339830..340051TCONS_00069902-exon-scaffold_511-1510915933:339830..340051Clytia hemisphaericaexon
TCONS_00069902-exon-scaffold_511-1575043694:339830..340051TCONS_00069902-exon-scaffold_511-1575043694:339830..340051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:328660..340051 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0274262	0	0	0	0	0	0.122167	0.41847	1.40776	1.12139	0.376856	1.40704	1.35801	1.37698	0.59749	0.219724	3.62304	3.60039	4.42618	5.84051	8.62098	6.41488	1.70618	3.26436	4.07323	5.99751	0.946433	0.779165	0.0877422	0.294496
Blast
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BLAST of TCONS_00069902 vs. Swiss-Prot (Human)
Match: PCFT (Proton-coupled folate transporter OS=Homo sapiens GN=SLC46A1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.121e-28
Identity = 119/476 (25.00%), Postives = 221/476 (46.43%), Query Frame = 2 
Query:  407 MDGSEISSDEPK-KNGFRYIC----EPVLFLYSFAYMLQFPTAHQYIYSRFSENIGFKYSYNNPHAGISRECHHGSMNQTDIHAQQKVQSATAHFQIYYHIMSIIPSTIMNLFYGALSDEVGRRCMMTVVLICSVIESSILLVNIVFKLPLWTXXXXXXXXXXXXXXXXXXXXXXAYTADVTEKMDRSVRIGYIEAALFLGMTISNYASGELIHQYGFTIPQVVTVLSHLSAILYVAFVLKKSRDQNKPRNETNKLLIFWQQP--INMWNILVKERANKDL-LY-LAIFILISGLTFTVSVHSVFTLYLLNRPFCWLARDVGYIMGTYFLLLSLGTAIGMKILTPTIPEWLLSL-LSFMMSAGSFLYIAFATNKLDLYAAIALRFFGGLPTAIFRGNVSKSVPQNEHGAIFSVITSIEMLLIMLGIFIFNTSY-AHLNDIGHPGWFFLIPAIMLIIPFTLSVVYWKKTFDLQRKHF 1801
            M+GS    ++P+ +     +C    EP++FL +FA +LQ P   QY++ RFS ++G    YN      +R+   G  N++     Q+V++ T+H+ +Y ++   +     +   GA SD VGRR ++ +  +  ++++ + +  +  +L +    +G       G   G+     A  ADV+    R+ R+  +EA++ +   +++   G  +   G+  P  + +   ++  LY AF   ++  + K    + +L  F      + ++     E++ K L LY LAIF++I   T       + TLY L+ P CW ++ +GY      L           +       W+  + L+F +     +  AFAT    ++    L F   + T + R  +SK V + E GA+FS +  +  L ++    IFN+ Y A LN +   G+ FL+ A +L+IP  L  +  K    L+ + F
Sbjct:    1 MEGSASPPEKPRARPAAAVLCRGPVEPLVFLANFALVLQGPLTTQYLWHRFSADLG----YNG-----TRQ-RGGCSNRSADPTMQEVETLTSHWTLYMNVGGFLVGLFSSTLLGAWSDSVGRRPLLVLASLGLLLQALVSVFVVQLQLHVGYFVLGRILCALLGDFGGLLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRAQGYANPFWLALALLIAMTLYAAFCFGETLKEPK----STRLFTFRHHRSIVQLYVAPAPEKSRKHLALYSLAIFVVI---TVHFGAQDILTLYELSTPLCWDSKLIGYGSAAQHLPYLTSLLALKLLQYCLADAWVAEIGLAFNILG--MVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVACVNSLAMLTASGIFNSLYPATLNFM--KGFPFLLGAGLLLIPAVLIGMLEKADPHLEFQQF 455
The following BLAST results are available for this feature:
BLAST of TCONS_00069902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCFT3.121e-2825.00Proton-coupled folate transporter OS=Homo sapiens ... [more]
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