TCONS_00069988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069988
Unique NameTCONS_00069988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069988 ID=TCONS_00069988|Name=TCONS_00069988|organism=Clytia hemisphaerica|type=transcript|length=487bp
AACCATTTTGTTTACTTAAGTGAAGTGGAAATAAGTATTGAAAGATGTGT
TacaatttttcatgaaattggaGTTGAGTGAATTTAGTATAGAGAGGGGC
GATACATATGTATTGAGGTTTGTTACACGCTGTTTTGAACTGTGAGAATC
GAGATTTTTTTTTGGGCACAAAAGGCGGAGATGAGGGGTGAAGAGCCTTC
CTTGTTAAAGAAAAGGCGGAGATTGATACATGACGCTGTGAGAGATGGGA
ACGTGTGCCAGTTACGTTATCTTCTCAAAAGACGTGGCGAAAACGTCAAT
ACGCAGGATGACCAACGAAAGACGGCGTTGATCATTGCCACCGAAACGAA
ATATACGTCGTTGAAAATACAACGGATTATTTTGCAGTTGATACTTGACG
CGCAACCAGATGTTAATTTGAAGGATCGCGAGAAACGGAGCGCACTTACG
CATGCGTGTAAAACGAATAACGTGATGGCCGTTCATT
Run BLAST on NCBI

protein sequence of TCONS_00069988-protein

>TCONS_00069988-protein ID=TCONS_00069988-protein|Name=TCONS_00069988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MRGEEPSLLKKRRRLIHDAVRDGNVCQLRYLLKRRGENVNTQDDQRKTAL
IIATETKYTSLKIQRIILQLILDAQPDVNLKDREKRSALTHACKTNNVMA
VH
Run BLAST on NCBI

transcript from alignment at scaffold_511:236325..236811

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069988 ID=TCONS_00069988|Name=TCONS_00069988|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at scaffold_511:236325..236811 (Clytia hemisphaerica)
AATGAACGGCCATCACGTTATTCGTTTTACACGCATGCGTAAGTGCGCTC
CGTTTCTCGCGATCCTTCAAATTAACATCTGGTTGCGCGTCAAGTATCAA
CTGCAAAATAATCCGTTGTATTTTCAACGACGTATATTTCGTTTCGGTGG
CAATGATCAACGCCGTCTTTCGTTGGTCATCCTGCGTATTGACGTTTTCG
CCACGTCTTTTGAGAAGATAACGTAACTGGCACACGTTCCCATCTCTCAC
AGCGTCATGTATCAATCTCCGCCTTTTCTTTAACAAGGAAGGCTCTTCAC
CCCTCATCTCCGCCTTTTGTGCCCAAAAAAAAATCTCGATTCTCACAGTT
CAAAACAGCGTGTAACAAACCTCAATACATATGTATCGCCCCTCTCTATA
CTAAATTCACTCAACtccaatttcatgaaaaattgtAACACATCTTTCAA
TACTTATTTCCACTTCACTTAAGTAAACAAAATGGTT

Coding sequence (CDS) from alignment at scaffold_511:236325..236811

>TCONS_00069988 ID=TCONS_00069988|Name=TCONS_00069988|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_511:236325..236811 (Clytia hemisphaerica)
ATGAACGGCCATCACGTTATTCGTTTTACACGCATGCGTAAGTGCGCTCC
GTTTCTCGCGATCCTTCAAATTAACATCTGGTTGCGCGTCAAGTATCAAC
TGCAAAATAATCCGTTGTATTTTCAACGACGTATATTTCGTTTCGGTGGC
AATGATCAACGCCGTCTTTCGTTGGTCATCCTGCGTATTGACGTTTTCGC
CACGTCTTTTGAGAAGATAACGTAACTGGCACACGTTCCCATCTCTCACA
GCGTCATGTATCAATCTCCGCCTTTTCTTTAACAAGGAAGGCTCTTCACC
CCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043567XLOC_043567Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069988-proteinTCONS_00069988-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069988-exon-scaffold_511-1491911889:236325..236811TCONS_00069988-exon-scaffold_511-1491911889:236325..236811Clytia hemisphaericaexon
TCONS_00069988-exon-scaffold_511-1510915933:236325..236811TCONS_00069988-exon-scaffold_511-1510915933:236325..236811Clytia hemisphaericaexon
TCONS_00069988-exon-scaffold_511-1575043694:236325..236811TCONS_00069988-exon-scaffold_511-1575043694:236325..236811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:236325..236811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127618	0.124447	0.722477	0.424099	0.1721	0.135996	1.47666	1.68963	0.537705	1.33207	0.775763	0.424964	1.35799	0.881431	1.66671	2.95513	5.17332	6.57901	0.135661	0.141959	1.97421	1.62498	0.146324	0.798179	0.685088	1.10056	0.174989	0.373507	0.283292	0.144315
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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