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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069866 ID=TCONS_00069866|Name=TCONS_00069866|organism=Clytia hemisphaerica|type=transcript|length=1429bp
atttttctattgttccaaacaataggcctattgttctaatttaactctga
aatctcaccctgatattcttatagaagttattcttataaaaaaagcatgt
agGTTTGAATTATATTACTATGCTATACTTTAGTATGTAATTTATTACTC
TTTAAGTTCAGGTGTGCTTTGGTTTGGAGAGATAAACAACTTTTGGAGGA
GGAGAATGAACGAATAAGACAAGCCAAAGATATCGAGTACAAAATCAGAG
ATTTGGAACTTCGTGAACGTCAGATCGAATTGGAGAGACAGAAAGTGACG
ATCAAAGAGAAGTCAGCTGTGAACGGAAATGTCATCGAGCTCACCTGTTA
TTATGATCAACAATCGCGAAACAAAATCAAAGATCTCCTAGCTGgagcAC
GACGAACTTTACCGAAGCCTCCAACCGAAGAACGATCGAGTTCTCGATCT
TGCATCCCACGACGCCGACAATACTCAGCGACAACGAATACGAGTCTATC
GGACGACGAAATTACCTTCAACACACAACAAATGCTACGACGACCCCGTA
AACTACCGAGTATCGATAGTTTTGAAAGTGCGAAGAGCCGTATAACGCAA
AGGTTTCAACTTGATGAAGAGTACAGTACTTCTCCTGCTAACAGTACTGG
CATGtcggttgattgattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgattga
ttgattcggAAGTATCGATCTATcggataaatttctttgatgaAAAGGTT
GAGGAAGAAAAAAAGGACATCTCACTGAGAAATCCCCATTGAGAATAAAT
gtaacattaaatttcttactGCTTGAACGCGTGAAAAGGaagtgaaaatg
aataaaagcaATAAATCAAATCACTCCTCCTGCTCACCAGGGAGTACGAG
TTCTCACCCCCTGCACAGAGCTTCGTTTCTAGTCAAAATTGTCTTGATTT
GTTGAATGTTCAGGGGGTAAAAGCTCATTTGAAAAGCGCCACACTTAACG
TTAGATATTGAAGATTTCACTGACGTCTTCAACAATTTAAATGGAgaagc
aaaaaatcaaaacattaaaatgaaaaggaagaaaaaggaataaaaaaatc
cGCGTTAATTATATTAGCCCACGATTCAATAATTCACACCtttattttta
tatagtttCTAATCAATTTCGATATTATATCCTTATATTTTTACGAATAA
GTTAAGACACTAAAGAAATATCtattattttttctcatttctttcATAGC
TCTCAGTCTTTTTCATTTAAtatccgaaaaacctttttcactttttatag
tGCAGAATTAGCAACAGGGGAATAATCTTATTGGACCAAAAGAAGGGACG
AACAATAAGAAAAGGCACCTGTCAGGAAT Run BLAST on NCBI transcript from alignment at scaffold_511:49797..51594+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069866 ID=TCONS_00069866|Name=TCONS_00069866|organism=Clytia hemisphaerica|type=transcript|length=1798bp|location=Sequence derived from alignment at scaffold_511:49797..51594+ (Clytia hemisphaerica)
atttttctattgttccaaacaataggcctattgttctaatttaactctga
aatctcaccctgatattcttatagaagttattcttataaaaaaagcatgt
agGTTTGAATTATATTACTATGCTATACTTTAGTATGTAATTTATTACTC
TTTAAGTTCAGGTGTGCTTTGGTTTGGAGAGATAAACAACTTTTGGAGGA
GGAGAATGAACGAATAAGACAAGCCAAAGATATCGAGTACAAAATCAGAG
ATTTGGAACTTCGTGAACGTCAGATCGAATTGGAGAGACAGAAAGTGACG
ATCAAAGAGAAGTCAGCTGTGAACGGAAATGTCATCGAGCTCACCTGTTA
TTATGATCAACAATCGCGAAACAAAATCAAAGATCTCCTAGCTGGTATGT
TTTGGAATTATCTGTATATTTACATTTTCTATGTAGTTTGAGAATAAAGA
ACACCTTCAGAACCCTGATATAGCTTTGAGGGCTCGATAACAGGCTTAGT
TCGCTATGAAAGcctgaaaatattgaaaatttagcaaactacatatataa
ttttcaaagaacaatgctaaaattcagaaaattgagCTCGTCTGAATGCT
GTTTTGATTCTCCAAAGATTTTAAGCTTATTGTGGATGATGTTATCCAAA
AAAacttatgaattttttgttcttttgcaATTCGCTTTTATTCAAAAATA
GGTTTAAAATGAATTATGTCAAGAAATTTGACTTCGTTCCAtcctgattt
gattttttttcaggagcACGACGAACTTTACCGAAGCCTCCAACCGAAGA
ACGATCGAGTTCTCGATCTTGCATCCCACGACGCCGACAATACTCAGCGA
CAACGAATACGAGTCTATCGGACGACGAAATTACCTTCAACACACAACAA
ATGCTACGACGACCCCGTAAACTACCGAGTATCGATAGTTTTGAAAGTGC
GAAGAGCCGTATAACGCAAAGGTTTCAACTTGATGAAGAGTACAGTACTT
CTCCTGCTAACAGTACTGGCATGtcggttgattgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattcggAAGTATCGATCTATcggataaa
tttctttgatgaAAAGGTTGAGGAAGAAAAAAAGGACATCTCACTGAGAA
ATCCCCATTGAGAATAAATgtaacattaaatttcttactGCTTGAACGCG
TGAAAAGGaagtgaaaatgaataaaagcaATAAATCAAATCACTCCTCCT
GCTCACCAGGGAGTACGAGTTCTCACCCCCTGCACAGAGCTTCGTTTCTA
GTCAAAATTGTCTTGATTTGTTGAATGTTCAGGGGGTAAAAGCTCATTTG
AAAAGCGCCACACTTAACGTTAGATATTGAAGATTTCACTGACGTCTTCA
ACAATTTAAATGGAgaagcaaaaaatcaaaacattaaaatgaaaaggaag
aaaaaggaataaaaaaatccGCGTTAATTATATTAGCCCACGATTCAATA
ATTCACACCtttatttttatatagtttCTAATCAATTTCGATATTATATC
CTTATATTTTTACGAATAAGTTAAGACACTAAAGAAATATCtattatttt
ttctcatttctttcATAGCTCTCAGTCTTTTTCATTTAAtatccgaaaaa
cctttttcactttttatagtGCAGAATTAGCAACAGGGGAATAATCTTAT
TGGACCAAAAGAAGGGACGAACAATAAGAAAAGGCACCTGTCAGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069866-exon-scaffold_511-1491911889:49797..50190 | TCONS_00069866-exon-scaffold_511-1491911889:49797..50190 | Clytia hemisphaerica | exon |
| TCONS_00069866-exon-scaffold_511-1510915933:49797..50190 | TCONS_00069866-exon-scaffold_511-1510915933:49797..50190 | Clytia hemisphaerica | exon |
| TCONS_00069866-exon-scaffold_511-1575043694:49797..50190 | TCONS_00069866-exon-scaffold_511-1575043694:49797..50190 | Clytia hemisphaerica | exon |
| TCONS_00069866-exon-scaffold_511-1491911889:50560..51594 | TCONS_00069866-exon-scaffold_511-1491911889:50560..51594 | Clytia hemisphaerica | exon |
| TCONS_00069866-exon-scaffold_511-1510915933:50560..51594 | TCONS_00069866-exon-scaffold_511-1510915933:50560..51594 | Clytia hemisphaerica | exon |
| TCONS_00069866-exon-scaffold_511-1575043694:50560..51594 | TCONS_00069866-exon-scaffold_511-1575043694:50560..51594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:49797..51594 + |
Blast
The following BLAST results are available for this feature:
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