TCONS_00069864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069864
Unique NameTCONS_00069864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069864 ID=TCONS_00069864|Name=TCONS_00069864|organism=Clytia hemisphaerica|type=transcript|length=352bp
CAAAAGTCAAAACACATGCAAAATGACACATCAATCCAGTCAAAAATCCA
CTATAACAAGCATTTAATTTGATCTTATTAAAGCAAAAGACGAAAAGCAA
AAACTGGATCACTACCCTTATTCTTCAAGTCACAAGTAACAACACCAATT
TGTcatttcaactttgagaaaGCAGATACAAATATTCAATTGTACCAGGC
TTGTATACCACGTtcgtgtcaaaatcaaaacaatcattaaATCTGACATC
TTTCTCAAAGAACTTGTCCCATCATATCAAATCCCAAAACAACTTGACAA
TCGTTTCTTAGCTCATTGACCGGTTAATTTATAACaattatgaataaaaa
at
Run BLAST on NCBI

transcript from alignment at scaffold_511:15693..16185+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069864 ID=TCONS_00069864|Name=TCONS_00069864|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_511:15693..16185+ (Clytia hemisphaerica)
CAAAAGTCAAAACACATGCAAAATGACACATCAATCCAGTCAAAAATCCA
CTATAACAAGCATTTAATTTGATCTTATTAAAGCAAAAGACGAAAAGGCT
ATAAAGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACGAAAAGCAAAAACTGGAT
CACTACCCTTATTCTTCAAGTCACAAGTAACAACACCAATTTGTcatttc
aactttgagaaaGCAGATACAAATATTCAATTGTACCAGGCTTGTATACC
ACGTtcgtgtcaaaatcaaaacaatcattaaATCTGACATCTTTCTCAAA
GAACTTGTCCCATCATATCAAATCCCAAAACAACTTGACAATCGTTTCTT
AGCTCATTGACCGGTTAATTTATAACaattatgaataaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043513XLOC_043513Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069864-exon-scaffold_511-1491911889:15693..15789TCONS_00069864-exon-scaffold_511-1491911889:15693..15789Clytia hemisphaericaexon
TCONS_00069864-exon-scaffold_511-1510915933:15693..15789TCONS_00069864-exon-scaffold_511-1510915933:15693..15789Clytia hemisphaericaexon
TCONS_00069864-exon-scaffold_511-1575043694:15693..15789TCONS_00069864-exon-scaffold_511-1575043694:15693..15789Clytia hemisphaericaexon
TCONS_00069864-exon-scaffold_511-1491911889:15931..16185TCONS_00069864-exon-scaffold_511-1491911889:15931..16185Clytia hemisphaericaexon
TCONS_00069864-exon-scaffold_511-1510915933:15931..16185TCONS_00069864-exon-scaffold_511-1510915933:15931..16185Clytia hemisphaericaexon
TCONS_00069864-exon-scaffold_511-1575043694:15931..16185TCONS_00069864-exon-scaffold_511-1575043694:15931..16185Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:15693..16185 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.2299	5.37482	5.74264	5.5036	2.0497	2.66347	5.5916	1.36581	1.02994	1.81799	0	0.384975	0.192968	0.0120016	0.728894	1.31233	2.51838	0.827497	0	0.827928	0	0.338133	2.90134	1.04472	1.16775	1.1228	3.0666	1.03147	2.20899	3.29125
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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